TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146862.6 - phase: 0 /pseudo
         (221 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (...    62  2e-10
TC84822 similar to GP|21554249|gb|AAM63324.1 unknown {Arabidopsi...    49  2e-06
TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_18...    32  0.19
TC86574 similar to GP|21593283|gb|AAM65232.1 putative chorismate...    27  4.8
TC84821 weakly similar to GP|17065212|gb|AAL32760.1 Unknown prot...    27  4.8
CA919923 weakly similar to GP|23237921|dbj contains ESTs D41667(...    27  8.1

>BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (japonica
           cultivar-group)}, partial (13%)
          Length = 769

 Score = 62.0 bits (149), Expect = 2e-10
 Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = +2

Query: 4   FDIEAYKQKRDIEDTYIVNRFIQRRKKLE---EAANQRLIDDYFANEPTYDDAMFRRRYR 60
           F ++ Y Q    E+    +R   +R+ +E   E   +RL +DYF+  P Y D  FRRRYR
Sbjct: 419 FTLKVYPQ----EEFASSSRPRSQRRNIERNREEGYKRLFNDYFSEAPVYMDE*FRRRYR 586

Query: 61  MQKHVFLRIVGDLSITDNYFTQRVDA 86
           M KHVFLRIV  L   D YF   VDA
Sbjct: 587 MHKHVFLRIVEALGQHDEYFQLTVDA 664


>TC84822 similar to GP|21554249|gb|AAM63324.1 unknown {Arabidopsis
          thaliana}, partial (47%)
          Length = 636

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 24/42 (57%), Positives = 31/42 (73%), Gaps = 4/42 (9%)
 Frame = +1

Query: 1  MDP----FDIEAYKQKRDIEDTYIVNRFIQRRKKLEEAANQR 38
          MDP    FDIEAYK+K +IE+ YI+NRF +RRK++EE    R
Sbjct: 40 MDPSKFRFDIEAYKRKSEIEERYILNRFRERRKQIEEGYTPR 165


>TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_180
           {Arabidopsis thaliana}, partial (23%)
          Length = 773

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 25/106 (23%), Positives = 47/106 (43%)
 Frame = +2

Query: 46  NEPTYDDAMFRRRYRMQKHVFLRIVGDLSITDNYFTQRVDAANKEGISPLAKCTTTMRML 105
           N   + D  FRR +RM K  F  I  +L   D+  T++ +   ++ I    +    +  L
Sbjct: 431 NREDFPDDEFRRCFRMSKQTFNMICNEL---DSSVTKK-NTTLRDAIPVRQRVAVCIYRL 598

Query: 106 AYGVAADAVDEYIKIGGTTTLECLRRFCKGIIRLYEEVYLRAPNQD 151
           A G     V +   +G +T  + +   C  I  +  + +LR P+++
Sbjct: 599 ATGEPLRLVSKKFGLGISTCHKLVLEVCAAIKSVLMQKFLRWPDEE 736


>TC86574 similar to GP|21593283|gb|AAM65232.1 putative chorismate
           mutase/prephenate dehydratase {Arabidopsis thaliana},
           partial (81%)
          Length = 1505

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 7/67 (10%)
 Frame = +3

Query: 57  RRYRMQKHVFLRIVGDLSITDNYFTQRVDAANKEGIS-------PLAKCTTTMRMLAYGV 109
           R Y +     L IVG++ +  ++    +    KE ++        LA+C  T+  L   V
Sbjct: 648 RNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALAQCENTLTKLGLNV 827

Query: 110 AADAVDE 116
           A +AVD+
Sbjct: 828 AREAVDD 848


>TC84821 weakly similar to GP|17065212|gb|AAL32760.1 Unknown protein
           {Arabidopsis thaliana}, partial (31%)
          Length = 534

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 15/47 (31%), Positives = 19/47 (39%)
 Frame = +3

Query: 144 YLRAPNQDDLQRILHVSEMQGFPGMIGSIDCMHWEWKNCPKAWEGTL 190
           +L      +L++  H S   GF GM    DC HW     P  W   L
Sbjct: 306 FLNITALSELRKDGHPSSHNGFHGM----DCTHWCVAGVPDTWNELL 434


>CA919923 weakly similar to GP|23237921|dbj contains ESTs D41667(S4320)
           AU033165(S4320)~mucin-like protein, partial (20%)
          Length = 774

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 106 AYGVAADAVDEYIKIGGTTTLECLRRFCKGIIRLYEEVYL 145
           A GVA    ++Y+ +  T    CL+ + KGI +   E+++
Sbjct: 668 ANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFI 549


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,524,904
Number of Sequences: 36976
Number of extensions: 84104
Number of successful extensions: 398
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of query: 221
length of database: 9,014,727
effective HSP length: 92
effective length of query: 129
effective length of database: 5,612,935
effective search space: 724068615
effective search space used: 724068615
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)