TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146862.5 + phase: 0 /pseudo
         (624 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CA916900 homologue to GP|6681366|db retinoblastoma-related prote...   270  e-107
BF519102 homologue to GP|6681366|db retinoblastoma-related prote...    94  2e-19
TC85073 similar to GP|6681366|dbj|BAA88690.1 retinoblastoma-rela...    60  3e-10
TC76984 similar to GP|13877717|gb|AAK43936.1 OsNAC6 protein-like...    32  0.95
BQ144385 similar to GP|21740500|emb OSJNBa0006B20.15 {Oryza sati...    29  6.2

>CA916900 homologue to GP|6681366|db retinoblastoma-related protein {Pisum
           sativum}, partial (23%)
          Length = 727

 Score =  270 bits (689), Expect(2) = e-107
 Identities = 133/135 (98%), Positives = 134/135 (98%)
 Frame = +3

Query: 318 LKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQ 377
           LKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQ
Sbjct: 321 LKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQ 500

Query: 378 QIRENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQC 437
           QIRENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQ 
Sbjct: 501 QIRENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQW 680

Query: 438 KPQVFRSVFVDWSSA 452
           +PQVFRSVFVDWSSA
Sbjct: 681 QPQVFRSVFVDWSSA 725



 Score =  139 bits (349), Expect(2) = e-107
 Identities = 69/70 (98%), Positives = 69/70 (98%)
 Frame = +2

Query: 250 FGELGMGKRFFDV*FISSR*TCPFCRNQSAWYVSRTNAIIR*NCNAN*LLLWRTASCAFL 309
           FGELGMGKRFFDV*FISSR*TCPFCRNQSAWYVSRTNAIIR*NCNAN*LLLWRTASCAFL
Sbjct: 2   FGELGMGKRFFDV*FISSR*TCPFCRNQSAWYVSRTNAIIR*NCNAN*LLLWRTASCAFL 181

Query: 310 A*A*DFACLK 319
           A*A*DFAC K
Sbjct: 182 A*A*DFACSK 211


>BF519102 homologue to GP|6681366|db retinoblastoma-related protein {Pisum
           sativum}, partial (10%)
          Length = 624

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 45/47 (95%), Positives = 45/47 (95%)
 Frame = -1

Query: 534 VSAAHNVYVSPLRSSKMDALISHSSKSYYACXGESTHAYQSPXKDLT 580
           VSAAHNVYVSPLRSSKMDALISHSSKSYYAC GESTHAYQSP KDLT
Sbjct: 624 VSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLT 484


>TC85073 similar to GP|6681366|dbj|BAA88690.1 retinoblastoma-related protein
           {Pisum sativum}, partial (22%)
          Length = 716

 Score = 60.1 bits (144), Expect(2) = 3e-10
 Identities = 31/35 (88%), Positives = 31/35 (88%)
 Frame = +1

Query: 53  AFQVAQIQRLLPPPVSTAMTTAKWLRTVISPLPIK 87
           AFQVAQIQRLLP  VSTAMTTAKWLRTVISPL  K
Sbjct: 571 AFQVAQIQRLLPXXVSTAMTTAKWLRTVISPLSSK 675



 Score = 23.1 bits (48), Expect(2) = 3e-10
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 86  IKAVTRARAILDFMRQ 101
           IK    ARAILD MRQ
Sbjct: 669 IKXXXXARAILDXMRQ 716


>TC76984 similar to GP|13877717|gb|AAK43936.1 OsNAC6 protein-like protein
           {Arabidopsis thaliana}, partial (71%)
          Length = 1450

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = -1

Query: 359 VKLGAVRISGMVERLQLSQQI-RENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVAKI 417
           V  GA R+     R+QL   I   +V  +  ++LN W  L F      II+   + V  I
Sbjct: 793 VPTGAARV-----RVQLWN*I*SVHVQLVIPQLLNFWLHLMFFYFFMFIIILNLWRVTSI 629

Query: 418 SQLNLTFREIIYNYRKQPQCKPQV 441
             LNL F  ++ N  + P  KPQV
Sbjct: 628 EFLNLAF--LVVNSTQHPIIKPQV 563


>BQ144385 similar to GP|21740500|emb OSJNBa0006B20.15 {Oryza sativa}, partial
           (14%)
          Length = 1329

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -2

Query: 324 PPPLQSAFASPTKPNPGGGGETCAET-----GISVFFSKIVKLGAVRI 366
           PPP       P  P PGGG +T  +T     G +  FS + K G VR+
Sbjct: 158 PPP-------PRLPKPGGGKKTVTQTPPARGGGAPLFSFLFKRGGVRV 36


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.342    0.148    0.505 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,837,498
Number of Sequences: 36976
Number of extensions: 274714
Number of successful extensions: 2100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 1657
length of query: 624
length of database: 9,014,727
effective HSP length: 102
effective length of query: 522
effective length of database: 5,243,175
effective search space: 2736937350
effective search space used: 2736937350
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 61 (28.1 bits)