TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146862.17 + phase: 0 
         (310 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF520292 similar to GP|6729002|gb| putative tRNA pseudouridine s...   238  3e-82
TC92928 similar to GP|2160170|gb|AAB60733.1| F21M12.19 gene prod...    41  7e-04
TC90341 similar to GP|21703099|gb|AAM74492.1 At1g76120/T23E18_5 ...    39  0.002
TC89204 similar to GP|16226341|gb|AAL16140.1 AT3g11400/F24K9_7 {...    29  2.6
BQ136845 similar to GP|11993473|gb ubiquitin-specific protease 1...    28  3.4
TC81097 weakly similar to PIR|T48134|T48134 hypothetical protein...    27  7.7

>BF520292 similar to GP|6729002|gb| putative tRNA pseudouridine synthase
           {Arabidopsis thaliana}, partial (35%)
          Length = 554

 Score =  238 bits (608), Expect(3) = 3e-82
 Identities = 121/135 (89%), Positives = 121/135 (89%), Gaps = 12/135 (8%)
 Frame = +3

Query: 16  IPSPTSLLS------------PNQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKAL 63
           IPS TSLLS            PNQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKAL
Sbjct: 45  IPSATSLLSLNSAASDVVEVKPNQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKAL 224

Query: 64  IRATKLQRKDLQLVGASRTDAGVHAWGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVRE 123
           IRATKLQRKDLQLVGASRTDA VHAWGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVRE
Sbjct: 225 IRATKLQRKDLQLVGASRTDARVHAWGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVRE 404

Query: 124 ISPASAEFHARFSVK 138
           ISPASAEFHARFSVK
Sbjct: 405 ISPASAEFHARFSVK 449



 Score = 75.9 bits (185), Expect(3) = 3e-82
 Identities = 34/35 (97%), Positives = 35/35 (99%)
 Frame = +2

Query: 169 SAAMREAARYFIGKHDFTAFENASHNDRIPDPVKH 203
           +AAMREAARYFIGKHDFTAFENASHNDRIPDPVKH
Sbjct: 449 NAAMREAARYFIGKHDFTAFENASHNDRIPDPVKH 553



 Score = 30.0 bits (66), Expect(3) = 3e-82
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +1

Query: 1  MSLALAAATSSVVTP 15
          MSLALAAATSSVVTP
Sbjct: 1  MSLALAAATSSVVTP 45


>TC92928 similar to GP|2160170|gb|AAB60733.1| F21M12.19 gene product
           {Arabidopsis thaliana}, partial (39%)
          Length = 643

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 24/64 (37%), Positives = 36/64 (55%)
 Frame = +2

Query: 31  KWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWG 90
           ++ + + Y GTR+ G+Q Q +  TV   +E A     K   + + +V +SRTDAGVHA  
Sbjct: 158 RYLVAVEYIGTRFFGFQKQLTDRTVAGVLEDAFC---KFVGQPVSVVCSSRTDAGVHALS 328

Query: 91  QVAH 94
            V H
Sbjct: 329 NVCH 340


>TC90341 similar to GP|21703099|gb|AAM74492.1 At1g76120/T23E18_5
           {Arabidopsis thaliana}, partial (38%)
          Length = 1103

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
 Frame = +2

Query: 31  KWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQL------VGASRTDA 84
           K  +  +Y G  Y G Q      T++  +E+AL  +  +  +D  L        ++RTD 
Sbjct: 251 KVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDK 430

Query: 85  GVHAWGQVA---HFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKI 141
           GV A GQV     ++ P  + +       LN  LPS IR+      +A F A+     + 
Sbjct: 431 GVSAVGQVVSGRFYIDPPGFVD------RLNSNLPSQIRIFGFKRVTASFSAKKFCDRRR 592

Query: 142 YHYKI 146
           Y Y I
Sbjct: 593 YVYLI 607


>TC89204 similar to GP|16226341|gb|AAL16140.1 AT3g11400/F24K9_7 {Arabidopsis
           thaliana}, partial (80%)
          Length = 1087

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 13/45 (28%), Positives = 20/45 (43%), Gaps = 4/45 (8%)
 Frame = -1

Query: 266 CYYLPPHGLCLVSINYNESHLLPPPGCPAKSF----GMHHTIRKC 306
           C+YL  H LC  +    ++H    P CP + +      HH+   C
Sbjct: 724 CFYL*QHILCSQNQKCQKAHANQAPSCPPRDWLPAQNSHHSSASC 590


>BQ136845 similar to GP|11993473|gb ubiquitin-specific protease 14
           {Arabidopsis thaliana}, partial (23%)
          Length = 680

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 15/46 (32%), Positives = 23/46 (49%)
 Frame = +1

Query: 16  IPSPTSLLSPNQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEK 61
           IP PT+ +      YK    LS+D   Y GW ++++   V   V+K
Sbjct: 118 IPEPTNRV------YKQECCLSFDTPDYVGWNFEKTGNPVYLHVKK 237


>TC81097 weakly similar to PIR|T48134|T48134 hypothetical protein T4C9.80 -
           Arabidopsis thaliana, partial (19%)
          Length = 1145

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 10  SSVVTPIPSPTSLLSPNQDGYKW 32
           SSV TPIP P S LS +  G  W
Sbjct: 542 SSVCTPIPVPISSLSSSMFGGSW 474


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,391,954
Number of Sequences: 36976
Number of extensions: 179992
Number of successful extensions: 898
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of query: 310
length of database: 9,014,727
effective HSP length: 96
effective length of query: 214
effective length of database: 5,465,031
effective search space: 1169516634
effective search space used: 1169516634
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)