BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146856.10 + phase: 0
(1260 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI267375 weakly similar to GP|18491187|gb| unknown protein {Arab... 38 0.028
BE321173 weakly similar to GP|9758879|dbj| non-phototropic hypoc... 33 0.91
TC76356 weakly similar to GP|22135896|gb|AAM91530.1 unknown prot... 33 0.91
TC89446 similar to GP|21592451|gb|AAM64402.1 unknown {Arabidopsi... 32 1.2
AW329656 similar to GP|13359453|db putative senescence-associate... 32 1.6
TC83616 similar to GP|16226661|gb|AAL16226.1 At2g28910/F8N16.20 ... 32 1.6
TC90338 similar to GP|10178069|dbj|BAB11433. emb|CAB89350.1~gene... 32 1.6
CA860027 similar to GP|313746|emb|C YBLO506 {Saccharomyces cerev... 31 2.7
CA990906 31 2.7
TC87037 similar to PIR|T46059|T46059 MAP kinase - Arabidopsis th... 30 5.9
TC80581 similar to GP|19683021|gb|AAL92644.1 hypothetical protei... 30 5.9
TC87796 weakly similar to SP|P03211|EBN1_EBV EBNA-1 nuclear prot... 30 5.9
AJ503895 30 7.7
TC79010 similar to GP|15081813|gb|AAK82561.1 At2g39190/T16B24.17... 24 8.2
>BI267375 weakly similar to GP|18491187|gb| unknown protein {Arabidopsis
thaliana}, partial (11%)
Length = 593
Score = 37.7 bits (86), Expect = 0.028
Identities = 38/133 (28%), Positives = 64/133 (47%), Gaps = 1/133 (0%)
Frame = +1
Query: 15 EFISLATTLTLKSSKSSLKTLIHSIKPSSNLISSLPPSLYESITTTIQSFLNLLELNNSE 74
E S +++L+L S SS+ LIH N L +L ++IT SF N L LNN+
Sbjct: 193 EATSSSSSLSLASKDSSI--LIHK-----NKFHKLGRNLSDAIT----SFKNTLNLNNTN 339
Query: 75 NPQTPPTA-TLRRSSRKNTTATTEPSSQSDEKHKLLEKLQILAHILFLCVSHPRKVFDFS 133
NP++PP++ L +S P +Q + L+ ++ H L +S+ + FD
Sbjct: 340 NPESPPSSKKLAWASVLRNLTQLYPGTQLPD--NLISTIR--NHYNSLPLSYAQAEFDMK 507
Query: 134 DLLPGVQALHDNL 146
D+ ++ + L
Sbjct: 508 DVFLHIKLMEQAL 546
>BE321173 weakly similar to GP|9758879|dbj| non-phototropic hypocotyl-like
protein {Arabidopsis thaliana}, partial (8%)
Length = 321
Score = 32.7 bits (73), Expect = 0.91
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 405 VRTIAVEGSCRVLHLFWEIIPSPIITKMLTKVISDMSHDVCNEVRLST 452
++TIA GS +LH+ ++P TK+++K I +++ CNE +L T
Sbjct: 137 LKTIA--GSVSILHISESLLPIAEKTKLVSKCIDAIAYIACNESQLCT 274
>TC76356 weakly similar to GP|22135896|gb|AAM91530.1 unknown protein
{Arabidopsis thaliana}, partial (36%)
Length = 2619
Score = 32.7 bits (73), Expect = 0.91
Identities = 20/65 (30%), Positives = 34/65 (51%), Gaps = 11/65 (16%)
Frame = +3
Query: 1188 FVCSKLFNRDD-RDWGDLMLSS------LEEIYPKIERQITEAS----DNDELEKLMHAK 1236
+VCSK F +DD +D+ + L+++YP +E + +S D ELE+ +H+
Sbjct: 786 YVCSKKFGKDDVKDFDITQMEGYWKQEILKQMYPHVESNSSGSSGKSDDGPELEENLHSS 965
Query: 1237 ELIEP 1241
I P
Sbjct: 966 SAIRP 980
>TC89446 similar to GP|21592451|gb|AAM64402.1 unknown {Arabidopsis
thaliana}, partial (54%)
Length = 747
Score = 32.3 bits (72), Expect = 1.2
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -3
Query: 9 LNSSPQEFISLATTLTLKSSKSSLKTLIHSIKPSSNLISSLPPSLYESITTTIQSFLNLL 68
L P + + T+ + SS + + S ++S+ SL S + T+ S LNL
Sbjct: 502 LQLQPPTALGFSVTMKAERISSST*STVAPFTKSYEILSTT--SLIPSFSKTLSSELNLS 329
Query: 69 -ELNNSENPQTPPTATLRRS 87
+L NP+ PP +TL+RS
Sbjct: 328 SKLKAY*NPEHPPVSTLKRS 269
>AW329656 similar to GP|13359453|db putative senescence-associated protein
{Pisum sativum}, partial (50%)
Length = 535
Score = 32.0 bits (71), Expect = 1.6
Identities = 28/86 (32%), Positives = 40/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 33 KTLIHSIKPSSNLISSLPPSLYESITTTIQSFLNLLELNNSENPQTPPTATLRRSSRKNT 92
KT + +IKP S ISS+ ES T + L + Q P + +LR S ++NT
Sbjct: 162 KTNLKNIKPISVNISSVELKRMESRNYTKRFMLQFV--------QIPQSKSLRSSHQRNT 317
Query: 93 TATT---EPSSQSDEKHKLLEKLQIL 115
TT P+ + + L KL IL
Sbjct: 318 RGTT*RSSPTRKGRQSWSLACKLSIL 395
>TC83616 similar to GP|16226661|gb|AAL16226.1 At2g28910/F8N16.20
{Arabidopsis thaliana}, partial (30%)
Length = 854
Score = 32.0 bits (71), Expect = 1.6
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +2
Query: 837 NVGTSSEKNGDSKGKKTKIDSSTLLSEAILDLT---IEHVLNCLEKLFGSDDTVQDHNVD 893
NV +S E+ DS+ ++IDS + AI+ + + K SDD D + D
Sbjct: 563 NVESSEEEEDDSESSDSEIDSE--IERAIVKRSGKKVSEKRGSYRKKDDSDDDESDKDSD 736
Query: 894 SHNLESTTGKNRSSKKRKRTGKNQNSTKRRR 924
+ K RS K + + +S +RRR
Sbjct: 737 RKRKKRGREKKRSVKTXRDASASXDSVERRR 829
>TC90338 similar to GP|10178069|dbj|BAB11433.
emb|CAB89350.1~gene_id:MUB3.18~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (18%)
Length = 734
Score = 32.0 bits (71), Expect = 1.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 550 NRCITLVKRSPMAGAIFCKYAVSEGASKTH 579
N C VKR P+ +IFC + +++G+S H
Sbjct: 697 NCCFLFVKREPLNPSIFCSFLLTQGSSILH 608
>CA860027 similar to GP|313746|emb|C YBLO506 {Saccharomyces cerevisiae},
partial (14%)
Length = 661
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/44 (36%), Positives = 26/44 (58%)
Frame = +1
Query: 884 DDTVQDHNVDSHNLESTTGKNRSSKKRKRTGKNQNSTKRRRLSL 927
DDT +DH+VDS + T ++ S KK+ + +Q ++RR L
Sbjct: 55 DDTFEDHSVDS---DHTPSRSNSLKKKPLSPDSQRRKEKRRSKL 177
>CA990906
Length = 227
Score = 31.2 bits (69), Expect = 2.7
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 12/53 (22%)
Frame = -3
Query: 889 DHNVDSHNLESTTG------KNRSSKKRKRTGKNQN------STKRRRLSLTN 929
DHNVD H++ T G + + KK+ + K+QN ST ++ L L N
Sbjct: 159 DHNVDHHHIHDTHG*WFHFHQKKKKKKKTQKVKSQNMLFCT*STNKKNLKLIN 1
>TC87037 similar to PIR|T46059|T46059 MAP kinase - Arabidopsis thaliana,
partial (31%)
Length = 1254
Score = 30.0 bits (66), Expect = 5.9
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 8 SLNSSPQEFISLATTLTLKSSKSSLKTLIHSIKPSSNLISSLPPSLYESITTTI 61
+ N S Q FIS T + S S + L+ ++PS++ ++ PP+L ESI +I
Sbjct: 889 NFNVSIQRFIS*KTWIMTLS*LSMVLGLMPIVEPSTSSLNCSPPAL*ESIERSI 1050
>TC80581 similar to GP|19683021|gb|AAL92644.1 hypothetical protein
{Dictyostelium discoideum}, partial (5%)
Length = 850
Score = 30.0 bits (66), Expect = 5.9
Identities = 34/124 (27%), Positives = 50/124 (39%), Gaps = 7/124 (5%)
Frame = -1
Query: 1067 LVAAAKPWLPDVVLALGSESVLQHTESGSEHLFASEQMKLQFPKWPFIVAKTVLSAVNEG 1126
+VAAA+ + + A S + SGS+ A EQMKL IV TV +AV
Sbjct: 673 VVAAAEAEVAPWISAAASTGAIG---SGSKSFVAVEQMKLAVVATSDIVVVTVAAAVEVV 503
Query: 1127 EGDGECSQADKFSTFNKLTAMLI-------ILLKKNKSIMDAVGDIFLVCSLIGLEQKDF 1179
E A S A+ + + +++ K + A DI +V +E D
Sbjct: 502 AAAAEAEVAPWISAAASTRAIAVG*GSKSFVAVEQMKPAVVAASDIVVVAVAAAVEVVDV 323
Query: 1180 ELAA 1183
AA
Sbjct: 322 VAAA 311
>TC87796 weakly similar to SP|P03211|EBN1_EBV EBNA-1 nuclear protein.
[strain B95-8 Human herpesvirus 4] {Epstein-barr
virus}, partial (23%)
Length = 431
Score = 30.0 bits (66), Expect = 5.9
Identities = 26/84 (30%), Positives = 41/84 (47%)
Frame = -3
Query: 13 PQEFISLATTLTLKSSKSSLKTLIHSIKPSSNLISSLPPSLYESITTTIQSFLNLLELNN 72
P+ I L L+ ++SS TL + SS LIS++ + S TTTI S + +
Sbjct: 342 PRNHILFLVLL*LRGARSSFITL--NCIESSGLISTMAATFTTSNTTTICSSMR-TSTTS 172
Query: 73 SENPQTPPTATLRRSSRKNTTATT 96
+ T T T RR + +TT ++
Sbjct: 171 ASTRATTSTTTPRRPTPISTTGSS 100
>AJ503895
Length = 541
Score = 29.6 bits (65), Expect = 7.7
Identities = 24/65 (36%), Positives = 35/65 (52%), Gaps = 3/65 (4%)
Frame = +3
Query: 130 FDFSDLLPGVQALHDNLIVLEADSILSSGIETICEEWWKENLPERESLIS---QTLPFVL 186
FDFS LP +LH + + DS L+ ++I E+ +LP ++L S + LPFVL
Sbjct: 123 FDFSSSLPPPISLHQPISLFAEDSSLTEA-KSIIED--TNDLPLFQTLESKKERVLPFVL 293
Query: 187 SRSLT 191
S T
Sbjct: 294 LNSCT 308
>TC79010 similar to GP|15081813|gb|AAK82561.1 At2g39190/T16B24.17
{Arabidopsis thaliana}, partial (40%)
Length = 975
Score = 24.3 bits (51), Expect(2) = 8.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 10 NSSPQEFISLATTLTLKSSKSSLKTLIH 37
++ Q +S ATT T+ +S SS++ LIH
Sbjct: 71 STQSQSPLSHATTPTINASFSSIRFLIH 154
Score = 23.5 bits (49), Expect(2) = 8.2
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 1/55 (1%)
Frame = +1
Query: 64 FLNLLELNNSENPQTPPTATLRRS-SRKNTTATTEPSSQSDEKHKLLEKLQILAH 117
F +LL+ ++S +PP AT+ S ATT PSS+ + H L H
Sbjct: 133 FYSLLD-SSSNLLHSPPMATVTAPPSLPFVRATTTPSSKKKKNHSKQRALGNFGH 294
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,780,750
Number of Sequences: 36976
Number of extensions: 523975
Number of successful extensions: 2997
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2995
length of query: 1260
length of database: 9,014,727
effective HSP length: 107
effective length of query: 1153
effective length of database: 5,058,295
effective search space: 5832214135
effective search space used: 5832214135
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC146856.10