TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146855.1 + phase: 0 /pseudo
         (1356 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR re...   108  1e-23
BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At...    87  6e-17
BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo...    86  1e-16
BI270343                                                               85  2e-16
BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-li...    55  1e-14
BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - ...    79  2e-14
TC92645                                                                54  3e-07
BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari...    36  0.12
BG648868                                                               35  0.15
TC90339 similar to GP|19387245|gb|AAL87157.1 putative kinesin li...    35  0.26
TC78836 weakly similar to PIR|T47934|T47934 hypothetical protein...    32  1.7
TC79874 similar to GP|17065608|gb|AAL33784.1 unknown protein {Ar...    32  2.2
TC79266 homologue to GP|3243256|gb|AAC24007.1| phosphoribosylpyr...    32  2.2
AJ498325 homologue to PIR|A25642|HSZM histone H4 - maize, partia...    31  2.8
TC86032 similar to PIR|T07612|T07612 cellulase (EC 3.2.1.4) Cel3...    31  2.8
TC87745 similar to PIR|F84452|F84452 probable nonsense-mediated ...    31  3.7
BF650175 similar to GP|21928041|gb At2g01270/F10A8.15 {Arabidops...    31  3.7
TC80200 similar to GP|21928041|gb|AAM78049.1 At2g01270/F10A8.15 ...    31  3.7
BG458090 similar to GP|21753870|dbj unnamed protein product {Hom...    30  4.9
TC86475 similar to GP|21592483|gb|AAM64433.1 similar to late emb...    30  6.3

>TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR retroelement
           reverse transcriptase {Oryza sativa (japonica
           cultivar-group)}, partial (1%)
          Length = 798

 Score =  108 bits (271), Expect = 1e-23
 Identities = 71/267 (26%), Positives = 120/267 (44%), Gaps = 9/267 (3%)
 Frame = -1

Query: 113 RRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLID 172
           +RR  W  + ++ +Q    WC IGDFN  L   + +G        +  FQ+     NL  
Sbjct: 798 KRRQLWSAISNIQTQHKLSWCCIGDFNTILGSHEHQGSHTPARLPMLDFQQWSDVNNLFH 619

Query: 173 LPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLD 232
           LP  G  FTW       +    R+DR++     ++     S  TL    SDH P+L +L 
Sbjct: 618 LPTRGSAFTWTNGRRGRNNTRKRLDRSIVNQLMIDNCESLSACTLTKLRSDHFPILFELQ 439

Query: 233 PPPWRAPHNSFRFNNSWLIEPELAHLVKDNWSYY----PSSNIVTKLSYCIEDMKYWSKA 288
               +   +SF+F   W   P+  +++K  W+      P   +  KL    E +K W+K 
Sbjct: 438 TQNIQF-SSSFKFMKMWSAHPDCINIIKQCWANQVVGCPMFVLNQKLKNLKEVLKVWNKN 262

Query: 289 NHPHFNQRKQQLKNQIDVMRNTSDASVDPRLIELQNSLANLILQ-----EDVYWRQRSKI 343
              + + +      ++D ++   D+     ++  Q   A L L+     E+V+W ++SK+
Sbjct: 261 TFGNVHSQVDNAYKELDDIQVKIDSIGYSDVLMDQEKAAQLNLESALNIEEVFWHEKSKV 82

Query: 344 FWLKDGDKNSKFFHLTASSRRRKNTIS 370
            W  +GD+N+ FFH  A  +R  + IS
Sbjct: 81  NWHCEGDRNTAFFHRVAKIKRTSSLIS 1


>BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
           [imported] - Arabidopsis thaliana, partial (16%)
          Length = 794

 Score = 86.7 bits (213), Expect = 6e-17
 Identities = 51/153 (33%), Positives = 80/153 (51%), Gaps = 1/153 (0%)
 Frame = +3

Query: 309 NTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNT 368
           NT   +    L  L++ L      E+++W Q+S++ WL+ GD+N+KFFH    +RR +N 
Sbjct: 51  NTKLFNKGEELSLLRSELNEEYHNEEIFWMQKSRLNWLRSGDRNTKFFHAVTKNRRAQNR 230

Query: 369 ISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAIN-GDQQPVITRIQARVTENDNATLTKP 427
           I  L   +      ++D+      +F  L+ + + G        I A VTE  NA L   
Sbjct: 231 ILSLIDDDDKEWFVEEDLGRLADSHFKLLYSSEDVGITLEDWNSIPAIVTEEQNAQLMAQ 410

Query: 428 FSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFF 460
            S +E +EAVF ++  K PGPDG+N  F+Q F+
Sbjct: 411 ISREEVREAVFDINPHKCPGPDGMNVFFFQQFW 509


>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
           Arabidopsis thaliana, partial (7%)
          Length = 687

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 43/120 (35%), Positives = 68/120 (55%), Gaps = 1/120 (0%)
 Frame = +2

Query: 345 WLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAINGD 404
           WLKDGDKN+KFFH  AS RR+ N I KL+   G W   ++++   +  YF+ LF + N  
Sbjct: 5   WLKDGDKNTKFFHSKASQRRKVNEIKKLKDETGNWCKGEENVERLLITYFNNLFTSSNPT 184

Query: 405 Q-QPVITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMI 463
             +     ++ +++        K F+ +E  EA+  MH  K+PGPDGL   F+Q ++ ++
Sbjct: 185 AIEETCEVVKGKLSHEHIVWCEKEFTEEEVLEAINQMHPVKAPGPDGLPALFFQKYWHIV 364


>BI270343 
          Length = 619

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 39/47 (82%), Positives = 43/47 (90%)
 Frame = +1

Query: 1   MNVIAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGL 47
           MNVI+WNCRGLGNVKAVPCIKDL+RVYK D+VILIETL  +NKIS L
Sbjct: 475 MNVISWNCRGLGNVKAVPCIKDLIRVYKSDVVILIETLVESNKISDL 615


>BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
           {Arabidopsis thaliana}, partial (7%)
          Length = 774

 Score = 55.1 bits (131), Expect(2) = 1e-14
 Identities = 26/89 (29%), Positives = 48/89 (53%)
 Frame = +2

Query: 4   IAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVDCIG 63
           + WNC+G+G+   V  +++      PDI+ L+ET   +  +  +     F  HF+V  +G
Sbjct: 212 MCWNCQGIGSDLTVRRLREFQTKDSPDIMFLMETKRKDEDVYKMYRGTEFTNHFTVPPVG 391

Query: 64  RSGGIAVLWRNSAHCSILNYSQHFINMSI 92
            SGG+A+ W+++    IL  S + I+  +
Sbjct: 392 LSGGLALSWKDNVQVEILASSANVIDTKV 478



 Score = 44.3 bits (103), Expect(2) = 1e-14
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +3

Query: 99  PWRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDR 153
           P+      G P    R   W+ L ++ +Q D  W + GDFND L  S+K GGP R
Sbjct: 495 PFSYHTSIGVPQPEHRAKFWDELSTIGAQRDGAWLLTGDFNDLLDNSEKVGGPAR 659


>BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - Arabidopsis
           thaliana, partial (17%)
          Length = 677

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
 Frame = +2

Query: 322 LQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLT 381
           L+  L      E+ YW+Q+S+  W   GD N KF+H     R  +N I  L   +G W+T
Sbjct: 8   LKEKLQEAYKDEEDYWQQKSRNMWHISGDLNKKFYHALTKQRHARNRIVGLYDYDGNWIT 187

Query: 382 SQDDMSAHIHDYFSGLFQAINGDQ-QPVITRIQARVTENDNATLTKPFSIDEFKEAVFSM 440
            +  +     DYF  LFQ          +  I + +T   N  L +  + +E + A+F M
Sbjct: 188 EEQGVEKVAVDYFEDLFQRTTPTGFDGFLDEITSSITPQMNQRLLRLATEEEVRLALFIM 367

Query: 441 HSDKSPGPDGL 451
           H +K+PGPDG+
Sbjct: 368 HPEKAPGPDGM 400


>TC92645 
          Length = 561

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 28/88 (31%), Positives = 45/88 (50%)
 Frame = +3

Query: 376 NGFWLTSQDDMSAHIHDYFSGLFQAINGDQQPVITRIQARVTENDNATLTKPFSIDEFKE 435
           N +W      ++   +     LFQA + +   V+  +  ++ + +N  LT PFS+DE   
Sbjct: 162 NFYWYNYLLVLNCSCNTLLQNLFQANSSNFSIVLNVVCRKIGDQNNCMLTAPFSVDEIWT 341

Query: 436 AVFSMHSDKSPGPDGLNPGFYQFFFGMI 463
           A+F MH DK+ G DGLN   Y  F  ++
Sbjct: 342 AIFQMHHDKAFGLDGLNLAVYYRF*NLV 425


>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
           (69%)
          Length = 616

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 28/99 (28%), Positives = 43/99 (43%)
 Frame = +3

Query: 424 LTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMILVLRFSVQLALGSNLVLSRL 483
           L   F+  E K A+FSM S K+PG DG N  F++  + +I        L       + ++
Sbjct: 12  LCSEFTAVEVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKI 191

Query: 484 ISMTQTLFLHPKVITRKQLKTSALSLCATSSTKLSLKSL 522
           I+ T    L PK +    +K      C +   K+  K L
Sbjct: 192 INCTYVTLL-PKEVNVTSVKNFRPIACCSVIYKIISKIL 305


>BG648868 
          Length = 801

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = -3

Query: 1   MNVIAWNCRGLGNVKAVPCIKDLVRVYKP 29
           M++I   C+G+GN++AVP +K LVR + P
Sbjct: 238 MSIII*KCQGMGNLRAVPALKYLVRCHMP 152


>TC90339 similar to GP|19387245|gb|AAL87157.1 putative kinesin light chain
           gene {Oryza sativa (japonica cultivar-group)}, partial
           (19%)
          Length = 779

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 953 FLLLLWLSCLSTICLIRICPLGIMISSILFLTT 985
           FLL  +LSC+  IC+IR+   GI IS +   TT
Sbjct: 627 FLLKFYLSCVVFICMIRVSHCGIQISPLFVYTT 725


>TC78836 weakly similar to PIR|T47934|T47934 hypothetical protein F2A19.20 -
            Arabidopsis thaliana, partial (7%)
          Length = 1075

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 14/38 (36%), Positives = 18/38 (46%)
 Frame = -3

Query: 1106 GSCCNLTQSSVTCFLLRMIFPLFYLISLTG*QPNNNLW 1143
            G CCN    ++  F  ++  P  YL  LTG Q   N W
Sbjct: 1031 GXCCNSIFGTMEIFSFKVFVPEIYLAHLTGVQKLRNAW 918


>TC79874 similar to GP|17065608|gb|AAL33784.1 unknown protein {Arabidopsis
            thaliana}, partial (88%)
          Length = 1154

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 952  LFLLLLWLSCLSTICLIRICPLGIMISSILFLTTKMLQQFFLSLLGTELWWILMFGSTRS 1011
            + L L+W    S +CL+R+    I +  +LF  +  L  F   LL  E+  +L++    +
Sbjct: 904  VLLCLVWHLLNSFMCLLRLMVKVIWVLRLLFWFSSDLTMFLSHLLWYEIIQLLLYNKKFA 1083

Query: 1012 MVP 1014
            M+P
Sbjct: 1084 MLP 1092


>TC79266 homologue to GP|3243256|gb|AAC24007.1| phosphoribosylpyrophosphate
            amidotransferase {Vigna unguiculata}, partial (46%)
          Length = 1187

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 1091 RIHISSLCVLRLLLVGSCCNLTQSSVTCFLLRMI 1124
            R ++  LC++ L LVG C N     V C LLR++
Sbjct: 174  RAYLLLLCLILLFLVGLCMNRVGDLVRCLLLRVL 275


>AJ498325 homologue to PIR|A25642|HSZM histone H4 - maize, partial (95%)
          Length = 365

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 21/57 (36%), Positives = 34/57 (58%)
 Frame = -2

Query: 311 SDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKN 367
           S  S  PR++ + NS++  ILQED+   Q +  F +   D+++  FH T+SSR+  N
Sbjct: 322 SSHSFPPRMLSVSNSISYNILQEDL---QHTSCFLI---DQSTDSFH-TSSSRQSMN 173


>TC86032 similar to PIR|T07612|T07612 cellulase (EC 3.2.1.4) Cel3
            membrane-anchored - tomato, complete
          Length = 2536

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 9/47 (19%)
 Frame = -2

Query: 924  IDGRSVMVPASMFGTLVGYVHSLHLNPPLFLLL---------LWLSC 961
            + G + M P S+FG   G+  SLH +PPL L L         LW +C
Sbjct: 1872 LSGPATMAPTSIFG--FGFDDSLHFHPPLQLYLTLFFGIDAALWWTC 1738


>TC87745 similar to PIR|F84452|F84452 probable nonsense-mediated mRNA decay
            protein [imported] - Arabidopsis thaliana, partial (77%)
          Length = 1902

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 864  IYPCSVSKVGNSLQNLAPYSLAFSKPNISLDGTSWIPILVT-IQVILGGAF 913
            IY  +   V   L+++  Y  A  KPN  + G+S   +LVT +Q+ +G  F
Sbjct: 1069 IYSTNCLLVSKDLKDVLQYCSASKKPNFKVSGSSKAMLLVTFVQITIGPIF 917


>BF650175 similar to GP|21928041|gb At2g01270/F10A8.15 {Arabidopsis
           thaliana}, partial (31%)
          Length = 544

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
 Frame = +1

Query: 938 TLVGYVHSLHLNPPLFLLLLWLSCLSTIC----------LIRICPLGIMISSILFLTTKM 987
           + V +   + L  P+ ++LL L  L ++           L+   P+G +++ I+ LTTK 
Sbjct: 10  SFVRFTTMIKLEQPIMIMLLSLMPLISMLF*KILLLPSLLLNSLPIGALLAGIISLTTKR 189

Query: 988 LQQFFLSLL 996
           LQ +   L+
Sbjct: 190 LQSYLTDLM 216


>TC80200 similar to GP|21928041|gb|AAM78049.1 At2g01270/F10A8.15
           {Arabidopsis thaliana}, partial (43%)
          Length = 1069

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
 Frame = +2

Query: 938 TLVGYVHSLHLNPPLFLLLLWLSCLSTIC----------LIRICPLGIMISSILFLTTKM 987
           + V +   + L  P+ ++LL L  L ++           L+   P+G +++ I+ LTTK 
Sbjct: 362 SFVRFTTMIKLEQPIMIMLLSLMPLISMLF*KILLLPSLLLNSLPIGALLAGIISLTTKR 541

Query: 988 LQQFFLSLL 996
           LQ +   L+
Sbjct: 542 LQSYLTDLM 568


>BG458090 similar to GP|21753870|dbj unnamed protein product {Homo sapiens},
           partial (11%)
          Length = 340

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/37 (40%), Positives = 22/37 (58%)
 Frame = -1

Query: 337 WRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLR 373
           WR+R +IFW K+  K SK  +  A++ R   T  +LR
Sbjct: 196 WRRRRRIFWCKNFRKKSKKKNSGAAALRPATTPEQLR 86


>TC86475 similar to GP|21592483|gb|AAM64433.1 similar to late embryogenesis
           abundant proteins {Arabidopsis thaliana}, partial (86%)
          Length = 1420

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 23/84 (27%), Positives = 42/84 (49%), Gaps = 1/84 (1%)
 Frame = -1

Query: 161 FQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLEL-FPHASLQTLVA 219
           F  ++S   LI +   G  F +F  I T+ +  +R+   +C A    + FP+ ++ ++ +
Sbjct: 316 FLPSLSTK*LISIRGIGTGFGFFMRISTTRSAFSRLILGMCIAETSAVGFPNPTVSSIFS 137

Query: 220 PMSDHTPLLLQLDPPPWRAPHNSF 243
           PMS   P  +  +PP    P +SF
Sbjct: 136 PMS*MKPFTVLRNPP---FPSSSF 74


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.338    0.147    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,384,752
Number of Sequences: 36976
Number of extensions: 856273
Number of successful extensions: 7158
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 4076
Number of HSP's successfully gapped in prelim test: 364
Number of HSP's that attempted gapping in prelim test: 2915
Number of HSP's gapped (non-prelim): 4765
length of query: 1356
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1248
effective length of database: 5,021,319
effective search space: 6266606112
effective search space used: 6266606112
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 64 (29.3 bits)