BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146853.8 + phase: 0 /partial
(71 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE940982 57 2e-09
BF003224 weakly similar to PIR|T45699|T456 hypothetical protein ... 27 2.0
BQ122834 weakly similar to GP|20521440|dbj hypothetical protein~... 26 2.6
TC89085 similar to GP|16604547|gb|AAL24279.1 At2g32090/F22D22.16... 26 2.6
TC93814 similar to PIR|B86365|B86365 probable sulphate transport... 26 3.3
AJ501871 homologue to GP|16197625|gb|A anaphase promoting comple... 26 3.3
BE124494 similar to GP|1480871|gb| sulfonylurea receptor {Homo s... 25 4.4
TC92917 similar to EGAD|62203|65065 transcription initiation fac... 25 5.7
BQ151241 GP|19917424|gb conserved hypothetical protein {Methanos... 25 5.7
TC84806 similar to GP|13676415|dbj|BAB41198. hypothetical protei... 25 7.4
TC76810 homologue to GP|17645764|emb|CAD19054. unnamed protein p... 25 7.4
BE249230 25 7.4
BE326046 similar to PIR|A84810|A848 probable guanylate binding p... 24 9.7
TC89997 weakly similar to GP|6856107|gb|AAF29775.1| ORF03 {Borre... 24 9.7
TC91281 similar to PIR|E71427|E71427 hypothetical protein - Arab... 24 9.7
>BE940982
Length = 482
Score = 56.6 bits (135), Expect = 2e-09
Identities = 29/43 (67%), Positives = 31/43 (71%)
Frame = +3
Query: 25 RKNDWKIRERKQKNKFVAKKKSKLTRELDIHGIGSSKYSFFNS 67
R N WKIR RK NKFVAKKKS T ELDIHGIGS K + N+
Sbjct: 9 RNNVWKIR*RKHLNKFVAKKKSGSTHELDIHGIGSYKDNTINT 137
>BF003224 weakly similar to PIR|T45699|T456 hypothetical protein F18L15.140 -
Arabidopsis thaliana, partial (8%)
Length = 439
Score = 26.6 bits (57), Expect = 2.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 11 DTSCRVWKVDKFVFRKNDW 29
D R+W D+F++ NDW
Sbjct: 363 DVYDRIWLCDQFLYENNDW 419
>BQ122834 weakly similar to GP|20521440|dbj hypothetical protein~similar to
transposase {Oryza sativa (japonica cultivar-group)},
partial (10%)
Length = 553
Score = 26.2 bits (56), Expect = 2.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 47 KLTRELDIHGIGSSKYSFFNSYHCC 71
+++ LD GSSKYS + +CC
Sbjct: 468 RISNSLDSDSKGSSKYSSISDLNCC 394
>TC89085 similar to GP|16604547|gb|AAL24279.1 At2g32090/F22D22.16
{Arabidopsis thaliana}, partial (60%)
Length = 603
Score = 26.2 bits (56), Expect = 2.6
Identities = 14/44 (31%), Positives = 22/44 (49%)
Frame = -3
Query: 13 SCRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTRELDIHG 56
S RVW+ DWK+ KQ+ + + + LT E+ +HG
Sbjct: 307 SLRVWR--------KDWKLDTEKQR*WPLGRWEGSLTGEVALHG 200
>TC93814 similar to PIR|B86365|B86365 probable sulphate transporter protein
[imported] - Arabidopsis thaliana, partial (30%)
Length = 671
Score = 25.8 bits (55), Expect = 3.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 10 IDTSCRVWKVDKFVF 24
I +C +WK+DKF F
Sbjct: 461 IPAACHIWKIDKFDF 505
>AJ501871 homologue to GP|16197625|gb|A anaphase promoting complex subunit 11
{Arabidopsis thaliana}, partial (84%)
Length = 669
Score = 25.8 bits (55), Expect = 3.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = -2
Query: 21 KFVFRKNDWKIRERKQKNKFVAKKKSKLTRELDIH------GIGSSK 61
K + RK + + KQK+K V K K T+++D H G G+ K
Sbjct: 215 KAIKRKLSQEKHDLKQKHKQVECKNEKDTQDIDFHFLMMKLGFGTKK 75
>BE124494 similar to GP|1480871|gb| sulfonylurea receptor {Homo sapiens},
partial (0%)
Length = 594
Score = 25.4 bits (54), Expect = 4.4
Identities = 11/31 (35%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Frame = +3
Query: 14 CRVWKVDKFVFRKNDWKIR-ERKQKNKFVAK 43
CR+WKV++ K D ++R K +N+ + K
Sbjct: 363 CRIWKVEERTADKRDVRLRLVNKDENRNILK 455
>TC92917 similar to EGAD|62203|65065 transcription initiation factor IIF
alpha subunit {Drosophila melanogaster}, partial (2%)
Length = 666
Score = 25.0 bits (53), Expect = 5.7
Identities = 18/79 (22%), Positives = 35/79 (43%), Gaps = 22/79 (27%)
Frame = -2
Query: 4 KSEVTVIDTSCRVWKVDKFVFRKND---WKIRERKQ-------------------KNKFV 41
+ E+T+++ + K DK +ND WK+R R+Q K +
Sbjct: 458 EEEITLLERKVKELK-DKLYQERNDDADWKVRHRRQPKLCNQFQGSFSQNYEVFTKGRKS 282
Query: 42 AKKKSKLTRELDIHGIGSS 60
+++ L+ +DIH + S+
Sbjct: 281 KDRRASLSSAMDIHSLFST 225
>BQ151241 GP|19917424|gb conserved hypothetical protein {Methanosarcina
acetivorans str. C2A}, partial (3%)
Length = 560
Score = 25.0 bits (53), Expect = 5.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 25 RKNDWKIRERKQKNKFVAKKKSKLTRELDIHGIGSSK 61
R + K R + K VAK+K + RE + G+G K
Sbjct: 524 RNGEVKTEGRSARMK*VAKRKGRRERETEEMGMGRGK 414
>TC84806 similar to GP|13676415|dbj|BAB41198. hypothetical protein {Glycine
max}, partial (10%)
Length = 803
Score = 24.6 bits (52), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 2 FTKSEVTVIDTSCRVWKVDKFVFRKNDWKI 31
F+KSE + TSC + +V + +F W I
Sbjct: 481 FSKSEGDLTSTSCWLSEVKETIFLSRSWWI 392
>TC76810 homologue to GP|17645764|emb|CAD19054. unnamed protein product
{Glycine max}, partial (98%)
Length = 1439
Score = 24.6 bits (52), Expect = 7.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 13 SCRVWKVDKFVFRKNDWKIRERKQKNKFV 41
+C+ +D K WKI +KQK+ V
Sbjct: 1128 NCKACMMDAMPSPKRKWKIEGKKQKHDMV 1214
>BE249230
Length = 698
Score = 24.6 bits (52), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 14 CRVWKVDKFVFRKNDWKIRERKQKNKFVAK 43
C +W + KN WKIR++ + K +AK
Sbjct: 539 CCIWPGNN-ARSKNSWKIRQKLCQGKLLAK 453
>BE326046 similar to PIR|A84810|A848 probable guanylate binding protein
[imported] - Arabidopsis thaliana, partial (31%)
Length = 527
Score = 24.3 bits (51), Expect = 9.7
Identities = 7/16 (43%), Positives = 13/16 (80%)
Frame = -2
Query: 24 FRKNDWKIRERKQKNK 39
FR+N W+ +E+K+K +
Sbjct: 253 FRRNSWREKEKKKKKR 206
>TC89997 weakly similar to GP|6856107|gb|AAF29775.1| ORF03 {Borrelia
burgdorferi}, partial (6%)
Length = 712
Score = 24.3 bits (51), Expect = 9.7
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 2/40 (5%)
Frame = +2
Query: 34 RKQKNKFV--AKKKSKLTRELDIHGIGSSKYSFFNSYHCC 71
R+ N+F + + +LT + D + K+ FNSY+CC
Sbjct: 290 RRYNNRFSNNSNRGERLTEQNDFN---LCKFFNFNSYNCC 400
>TC91281 similar to PIR|E71427|E71427 hypothetical protein - Arabidopsis
thaliana, partial (36%)
Length = 1107
Score = 24.3 bits (51), Expect = 9.7
Identities = 10/24 (41%), Positives = 12/24 (49%)
Frame = -3
Query: 48 LTRELDIHGIGSSKYSFFNSYHCC 71
LT +L HG+G FF H C
Sbjct: 553 LTPQLSPHGVGLGTCRFFKLAHSC 482
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.323 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,710,214
Number of Sequences: 36976
Number of extensions: 27464
Number of successful extensions: 220
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of query: 71
length of database: 9,014,727
effective HSP length: 47
effective length of query: 24
effective length of database: 7,276,855
effective search space: 174644520
effective search space used: 174644520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)
Medicago: description of AC146853.8