TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146842.3 + phase: 0 /pseudo
         (57 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC79318 similar to PIR|H84431|H84431 probable glutamate decarbox...    73  3e-14
TC78169 homologue to SP|Q07346|DCE_PETHY Glutamate decarboxylase...    72  3e-14
TC86064 similar to SP|P54767|DCE_LYCES Glutamate decarboxylase (...    68  6e-13
TC86602 similar to PIR|H84861|H84861 3-isopropylmalate dehydrata...    27  2.1
TC87671 similar to GP|10177390|dbj|BAB10591. enoyl CoA hydratase...    25  4.7
TC85672 similar to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 ...    25  8.0

>TC79318 similar to PIR|H84431|H84431 probable glutamate decarboxylase
           [imported] - Arabidopsis thaliana, partial (77%)
          Length = 1934

 Score = 72.8 bits (177), Expect = 3e-14
 Identities = 32/37 (86%), Positives = 32/37 (86%)
 Frame = +1

Query: 17  FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
           F Y  LEWDFRLPLVKSINVSGHKYGL Y GIGWVIW
Sbjct: 859 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 969


>TC78169 homologue to SP|Q07346|DCE_PETHY Glutamate decarboxylase (EC
           4.1.1.15) (GAD). [Petunia] {Petunia hybrida}, partial
           (67%)
          Length = 1050

 Score = 72.4 bits (176), Expect = 3e-14
 Identities = 32/40 (80%), Positives = 33/40 (82%)
 Frame = +3

Query: 17  FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIWCSR 56
           F Y  LEWDFRLPLVKSINVSGHKYGL Y GIGW IW S+
Sbjct: 798 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWAIWRSK 917


>TC86064 similar to SP|P54767|DCE_LYCES Glutamate decarboxylase (EC
           4.1.1.15) (GAD) (ERT D1). [Tomato] {Lycopersicon
           esculentum}, partial (87%)
          Length = 1759

 Score = 68.2 bits (165), Expect = 6e-13
 Identities = 30/37 (81%), Positives = 31/37 (83%)
 Frame = +1

Query: 17  FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
           F Y  L WDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 841 FLYPDLLWDFRLPLVKSINVSGHKYGLVYPGIGWVVW 951


>TC86602 similar to PIR|H84861|H84861 3-isopropylmalate dehydratase  small
            subunit [imported] - Arabidopsis thaliana, partial (69%)
          Length = 1070

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 8    MDLHAPTSSFPYKMLEWDFRLPLVKSINVSGHKYGLF 44
            +DLH     FP+  LE  F++ LVK   +  +K+ L+
Sbjct: 1063 IDLH-----FPFVYLEKHFKIELVKKYTIELYKHNLY 968


>TC87671 similar to GP|10177390|dbj|BAB10591. enoyl CoA hydratase-like
           protein {Arabidopsis thaliana}, partial (93%)
          Length = 1086

 Score = 25.4 bits (54), Expect = 4.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 1   MAKYPVTMDLHAPTSSFPY 19
           ++ YPV  +  AP S+FPY
Sbjct: 201 LSSYPVPANTSAPASTFPY 257


>TC85672 similar to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1).
           [Apricot] {Prunus armeniaca}, complete
          Length = 1507

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 34  INVSGHKYGLFYIGIGWVI 52
           I V   K G+FY+G+ W+I
Sbjct: 834 IRVVRRKKGMFYLGLRWLI 890


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.328    0.143    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,432,735
Number of Sequences: 36976
Number of extensions: 30273
Number of successful extensions: 201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of query: 57
length of database: 9,014,727
effective HSP length: 33
effective length of query: 24
effective length of database: 7,794,519
effective search space: 187068456
effective search space used: 187068456
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)