BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146842.1 + phase: 0
(216 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC77053 similar to GP|5882739|gb|AAD55292.1| Contains PF|00249 M... 70 5e-13
TC90249 similar to PIR|T01241|T01241 probable MYB family transcr... 70 6e-13
BF641261 similar to PIR|F96527|F96 protein F27J15.20 [imported] ... 56 8e-13
BF003941 homologue to GP|9759223|dbj| contains similarity to Myb... 69 1e-12
TC77052 similar to GP|5882739|gb|AAD55292.1| Contains PF|00249 M... 69 2e-12
TC84941 homologue to GP|18874263|gb|AAL78741.1 MYB-like transcri... 69 2e-12
TC80787 similar to GP|18175700|gb|AAL59913.1 unknown protein {Ar... 57 5e-12
TC91357 similar to GP|2194137|gb|AAB61112.1| ESTs gb|R29947 gb|H... 66 1e-11
TC89641 similar to GP|9988432|dbj|BAB12698.1 hypothetical protei... 65 2e-11
TC78787 similar to GP|13569996|gb|AAK31280.1 putative Myb-relate... 65 2e-11
BG645191 similar to GP|2194137|gb| ESTs gb|R29947 gb|H76702 come... 64 3e-11
TC86301 similar to GP|8809622|dbj|BAA97173.1 Myb-related transcr... 64 4e-11
AW685905 similar to GP|19911579|db syringolide-induced protein 1... 63 1e-10
TC80476 similar to GP|9988432|dbj|BAB12698.1 hypothetical protei... 63 1e-10
TC77331 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~un... 59 1e-09
TC79114 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~un... 57 5e-09
TC89657 weakly similar to PIR|T08573|T08573 hypothetical protein... 56 1e-08
TC88060 homologue to GP|21593278|gb|AAM65227.1 contains similari... 49 1e-06
TC90910 homologue to GP|21689883|gb|AAM67502.1 unknown protein {... 48 3e-06
TC91702 homologue to GP|21593278|gb|AAM65227.1 contains similari... 48 3e-06
>TC77053 similar to GP|5882739|gb|AAD55292.1| Contains PF|00249 Myb-like
DNA-binding domain. EST gb|Z18152 comes from this
gene., partial (43%)
Length = 794
Score = 70.5 bits (171), Expect = 5e-13
Identities = 45/126 (35%), Positives = 75/126 (58%), Gaps = 10/126 (7%)
Frame = +1
Query: 71 DFSTNSDDFIISKASTDENKAPP---TKNKTKKVVRVKHWTEEEHRLFLEGIEIHGKGKW 127
D + N D AS D+ A P +N+ ++ R WTEEEH+LFL G++ GKG W
Sbjct: 226 DDNINKDVITAGYASADD--AVPQNSARNRDRERKRRIPWTEEEHKLFLVGLQKVGKGDW 399
Query: 128 KLISQ-HVRTRTASQVASHAQKHFLHQLDGTSKKTYKKRSNFY------ITSLKGNSKPL 180
+ IS+ +V+TRT +QVASHAQK+FL + ++ ++RS+ + ++++ + +
Sbjct: 400 RGISRNYVKTRTPTQVASHAQKYFLRR---SNLNRRRRRSSLFDITTDTVSAIPMEEEQV 570
Query: 181 LNKDNI 186
N+DN+
Sbjct: 571 KNQDNV 588
>TC90249 similar to PIR|T01241|T01241 probable MYB family transcription
factor [imported] - Arabidopsis thaliana, partial (44%)
Length = 1012
Score = 70.1 bits (170), Expect = 6e-13
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Frame = +3
Query: 42 LVCGRSSTEVKEHYETLLHDLALIEEGLVD---FSTNSDDF-IISKASTDENKAPPTKNK 97
++ G++ +V + Y L+ D++ IE G V + +S F ++ K + D N+ +
Sbjct: 573 MIPGKTVFDVIKQYRELVEDVSEIEAGNVPIPGYLASSFTFEVVEKQNYDGNRRRHVTVR 752
Query: 98 TKKVVRVKH--WTEEEHRLFLEGIEIHGKGKWKLISQH-VRTRTASQVASHAQKHFLHQL 154
R K WTEEEHR FL G+ +GKG W+ IS++ V T+T +QVASHAQK+++ Q
Sbjct: 753 GSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQK 932
Query: 155 DGTSKKTYKKRSNFYITSL 173
+ K ++ S IT++
Sbjct: 933 VSSGGKDKRRPSIHDITTV 989
>BF641261 similar to PIR|F96527|F96 protein F27J15.20 [imported] -
Arabidopsis thaliana, partial (46%)
Length = 679
Score = 55.8 bits (133), Expect(2) = 8e-13
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 38/150 (25%)
Frame = +3
Query: 13 WTWDENKIFETILFEYLEEVQEGR--WENIGL-VCGRSSTEVKEHYETLLHDLALIEEGL 69
W+++E K FE + + E ++ + WE I V +S +VK+HY+ L+ D++ IEEG
Sbjct: 96 WSYEEEKAFENAIAMHWIEKEDSKEQWEKIASSVPNKSMEQVKQHYQVLVDDVSAIEEGH 275
Query: 70 VDFSTNSDDF-IISKASTDENKAPPTKNK------------------------------- 97
V +++ I+ ++ D +KA + +K
Sbjct: 276 VSLPNYANELETINSSNKDSSKATTSSDKRSSCNFGSGFSGLGHDSTHHSSGKGGLSRSS 455
Query: 98 -TKKVVRVK--HWTEEEHRLFLEGIEIHGK 124
+ + R K WTEEEHRLFL G++ GK
Sbjct: 456 SSSEQERRKGIPWTEEEHRLFLLGLDKFGK 545
Score = 33.9 bits (76), Expect(2) = 8e-13
Identities = 16/29 (55%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +2
Query: 124 KGKWKLISQH-VRTRTASQVASHAQKHFL 151
KG W+ IS++ V +RT +QVA HAQK+F+
Sbjct: 542 KGDWRSISRNFVISRTPTQVAXHAQKYFI 628
>BF003941 homologue to GP|9759223|dbj| contains similarity to Myb-related
transcription factor~gene_id:K19M22.10 {Arabidopsis
thaliana}, partial (30%)
Length = 545
Score = 69.3 bits (168), Expect = 1e-12
Identities = 40/89 (44%), Positives = 56/89 (61%), Gaps = 1/89 (1%)
Frame = +3
Query: 73 STNSDDFIISKASTDENKAPPTKNKTKKVVRVKHWTEEEHRLFLEGIEIHGKGKWKLISQ 132
S+ D+F S + +AP + K + WTEEEH+LFL G++ +GKG W+ IS+
Sbjct: 18 SSGYDEFRGSGKRSSVVRAPEQERK-----KGVPWTEEEHKLFLLGLKKYGKGDWRNISR 182
Query: 133 H-VRTRTASQVASHAQKHFLHQLDGTSKK 160
+ V TRT +QVASHAQK+F+ QL G K
Sbjct: 183 NFVITRTPTQVASHAQKYFIRQLSGGKDK 269
>TC77052 similar to GP|5882739|gb|AAD55292.1| Contains PF|00249 Myb-like
DNA-binding domain. EST gb|Z18152 comes from this
gene., partial (43%)
Length = 1670
Score = 68.6 bits (166), Expect = 2e-12
Identities = 44/106 (41%), Positives = 66/106 (61%), Gaps = 4/106 (3%)
Frame = +3
Query: 71 DFSTNSDDFIISKASTDENKAPP---TKNKTKKVVRVKHWTEEEHRLFLEGIEIHGKGKW 127
D + N D AS D+ A P +N+ ++ R WTEEEH+LFL G++ GKG W
Sbjct: 408 DDNINKDVITAGYASADD--AVPQNSARNRDRERKRGIPWTEEEHKLFLVGLQKVGKGDW 581
Query: 128 KLISQ-HVRTRTASQVASHAQKHFLHQLDGTSKKTYKKRSNFYITS 172
+ IS+ +V+TRT +QVASHAQK+FL + + ++ ++ S F IT+
Sbjct: 582 RGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRR--RRSSLFDITT 713
>TC84941 homologue to GP|18874263|gb|AAL78741.1 MYB-like transcription
factor DIVARICATA {Antirrhinum majus}, partial (28%)
Length = 590
Score = 68.6 bits (166), Expect = 2e-12
Identities = 33/55 (60%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = +3
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQH-VRTRTASQVASHAQKHFLHQLDGTSKK 160
WTEEEH+LFL G++ +GKG W+ IS++ V TRT +QVASHAQK+F+ QL G K
Sbjct: 18 WTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDK 182
>TC80787 similar to GP|18175700|gb|AAL59913.1 unknown protein {Arabidopsis
thaliana}, partial (22%)
Length = 802
Score = 57.0 bits (136), Expect(2) = 5e-12
Identities = 32/81 (39%), Positives = 48/81 (58%), Gaps = 2/81 (2%)
Frame = +3
Query: 10 SKEWTWDENKIFETILFEYLEEVQEGRWENIGL-VCGRSSTEVKEHYETLLHDLALIEEG 68
S EW+W+++K FE L Y E+ + RWE I + V G++ E+K+HYE L+ D+ IE G
Sbjct: 417 SSEWSWEQDKAFENALVTYPEDDSD-RWEKIAVDVPGKTMEEIKQHYELLVDDIGQIEAG 593
Query: 69 LVDF-STNSDDFIISKASTDE 88
V S NS + ++DE
Sbjct: 594 CVPLPSYNSSSEGSTSHASDE 656
Score = 30.0 bits (66), Expect(2) = 5e-12
Identities = 11/13 (84%), Positives = 12/13 (91%)
Frame = +1
Query: 107 WTEEEHRLFLEGI 119
WTEEEHRLFL G+
Sbjct: 763 WTEEEHRLFLSGL 801
>TC91357 similar to GP|2194137|gb|AAB61112.1| ESTs gb|R29947 gb|H76702 come
from this gene. {Arabidopsis thaliana}, partial (40%)
Length = 766
Score = 65.9 bits (159), Expect = 1e-11
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +3
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQH-VRTRTASQVASHAQKHFLHQLDGTSKKTYKKR 165
WTEEEH+LFL G++ GKG W+ IS++ V+TRT +QVASHAQK+FL + + ++ ++
Sbjct: 519 WTEEEHKLFLLGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRR--RRS 692
Query: 166 SNFYITSLKGNSKPLLNKDNIPSPSTSW 193
S F IT+ D + P T W
Sbjct: 693 SLFDITT-----------DTVMEPFTIW 743
>TC89641 similar to GP|9988432|dbj|BAB12698.1 hypothetical protein {Oryza
sativa (japonica cultivar-group)}, partial (44%)
Length = 1080
Score = 65.5 bits (158), Expect = 2e-11
Identities = 42/89 (47%), Positives = 58/89 (64%), Gaps = 1/89 (1%)
Frame = +3
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQ-HVRTRTASQVASHAQKHFLHQLDGTSKKTYKKR 165
WTEEEHR FL G+E GKG W+ IS+ +V TRT +QVASHAQK+F+ +L +KK K+R
Sbjct: 378 WTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFI-RLATLNKK--KRR 548
Query: 166 SNFYITSLKGNSKPLLNKDNIPSPSTSWD 194
S+ + G + ++ +N S S S D
Sbjct: 549 SSLFDMVGSGKTNKTVDPNN-SSKSKSGD 632
>TC78787 similar to GP|13569996|gb|AAK31280.1 putative Myb-related protein
{Oryza sativa}, partial (47%)
Length = 1438
Score = 65.1 bits (157), Expect = 2e-11
Identities = 33/64 (51%), Positives = 48/64 (74%), Gaps = 1/64 (1%)
Frame = +2
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQH-VRTRTASQVASHAQKHFLHQLDGTSKKTYKKR 165
WTEEEHRLFL G++ GKG W+ I+++ V +RT +QVASHAQK+F+ Q + T + K+R
Sbjct: 446 WTEEEHRLFLVGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRR---KRR 616
Query: 166 SNFY 169
S+ +
Sbjct: 617 SSLF 628
>BG645191 similar to GP|2194137|gb| ESTs gb|R29947 gb|H76702 come from this
gene. {Arabidopsis thaliana}, partial (40%)
Length = 649
Score = 64.3 bits (155), Expect = 3e-11
Identities = 34/67 (50%), Positives = 50/67 (73%), Gaps = 1/67 (1%)
Frame = +1
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQH-VRTRTASQVASHAQKHFLHQLDGTSKKTYKKR 165
WTEEEH+LFL G++ GKG W+ IS++ V+TRT +QVASHAQK+FL + + ++ ++
Sbjct: 412 WTEEEHKLFLLGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRR--RRS 585
Query: 166 SNFYITS 172
S F IT+
Sbjct: 586 SLFDITT 606
>TC86301 similar to GP|8809622|dbj|BAA97173.1 Myb-related transcription
activator-like {Arabidopsis thaliana}, partial (56%)
Length = 1396
Score = 63.9 bits (154), Expect = 4e-11
Identities = 37/95 (38%), Positives = 57/95 (59%), Gaps = 1/95 (1%)
Frame = +2
Query: 76 SDDFIISKASTDENKAPPTKNKTKKVVRVKHWTEEEHRLFLEGIEIHGKGKWKLISQ-HV 134
S+DF+ +ST + T WTEEEHR+FL G+ GKG W+ I++ +V
Sbjct: 413 SEDFVPGSSSTSRERKKGTP-----------WTEEEHRMFLLGLNKLGKGDWRGIARNYV 559
Query: 135 RTRTASQVASHAQKHFLHQLDGTSKKTYKKRSNFY 169
+RT +QVASHAQK+F+ Q + + + K+RS+ +
Sbjct: 560 ISRTPTQVASHAQKYFIRQSNVSRR---KRRSSLF 655
>AW685905 similar to GP|19911579|db syringolide-induced protein 1-3-1B
{Glycine max}, partial (46%)
Length = 613
Score = 62.8 bits (151), Expect = 1e-10
Identities = 38/111 (34%), Positives = 60/111 (53%), Gaps = 9/111 (8%)
Frame = +1
Query: 12 EWTWDENKIFETILFEYLEEVQEGRWENIG-LVCGRSSTEVKEHYETLLHDLALIEEGLV 70
+WT D +K+FE L E++ + RWE I V G+S+ E+++HYE L+HD+ I+ G V
Sbjct: 121 QWTRDHDKLFERALLMVPEDLPD-RWEKIAEQVPGKSAAEIRDHYEALVHDILEIDSGRV 297
Query: 71 DFSTNSDDFIIS---KASTDENK-----APPTKNKTKKVVRVKHWTEEEHR 113
+ + SD+ +S A D + + P + + WTEEEHR
Sbjct: 298 EVPSYSDESAVSGGGLAEWDSSNQISFGSKPRHGGDNERKKGTPWTEEEHR 450
>TC80476 similar to GP|9988432|dbj|BAB12698.1 hypothetical protein {Oryza
sativa (japonica cultivar-group)}, partial (34%)
Length = 778
Score = 62.8 bits (151), Expect = 1e-10
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = +1
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQH-VRTRTASQVASHAQKHFLHQLDGTSKKTYKKR 165
WTEEEHR+FL G+E GKG W+ IS++ V +RT +QVASHAQK+FL +L +K K+R
Sbjct: 352 WTEEEHRMFLVGLEKLGKGDWRGISKNFVTSRTPTQVASHAQKYFL-RLATINK---KRR 519
Query: 166 SNFYITSLKGNSK 178
S+ + L G+ K
Sbjct: 520 SSLF--DLAGSKK 552
>TC77331 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~unknown
protein {Arabidopsis thaliana}, partial (25%)
Length = 1835
Score = 59.3 bits (142), Expect = 1e-09
Identities = 28/78 (35%), Positives = 49/78 (61%), Gaps = 3/78 (3%)
Frame = +1
Query: 85 STDENKAPPTKNKTKKVVRVKHWTEEEHRLFLEGIEIHGKGKWKLISQHVRTRTASQVAS 144
S N AP + + + WT+EEH+ FLE ++++G+G W+ I +H+ ++TA Q+ S
Sbjct: 304 SVGNNLAPKVRKPYTITKQREKWTDEEHQKFLEALKLYGRG-WRQIEEHIGSKTAIQIRS 480
Query: 145 HAQKHF---LHQLDGTSK 159
HAQK F + + DG+++
Sbjct: 481 HAQKFFSKVVREPDGSAE 534
>TC79114 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~unknown
protein {Arabidopsis thaliana}, partial (32%)
Length = 759
Score = 57.0 bits (136), Expect = 5e-09
Identities = 31/92 (33%), Positives = 53/92 (56%)
Frame = +1
Query: 59 LHDLALIEEGLVDFSTNSDDFIISKASTDENKAPPTKNKTKKVVRVKHWTEEEHRLFLEG 118
+H + +++ L FS +D + + + P T K ++ WT+EEH+ FLE
Sbjct: 178 MHSVIHVQKLLDQFSCGNDHAL-------KARKPYTITKQRE-----KWTDEEHKKFLEA 321
Query: 119 IEIHGKGKWKLISQHVRTRTASQVASHAQKHF 150
++++G+ W+ I +HV T+TA Q+ SHAQK F
Sbjct: 322 LKLYGRA-WRKIEEHVGTKTAVQIRSHAQKFF 414
>TC89657 weakly similar to PIR|T08573|T08573 hypothetical protein T22F8.150
- Arabidopsis thaliana, partial (60%)
Length = 909
Score = 55.8 bits (133), Expect = 1e-08
Identities = 31/81 (38%), Positives = 48/81 (58%), Gaps = 2/81 (2%)
Frame = +1
Query: 10 SKEWTWDENKIFETILFEYLEEVQEGRWENIGL-VCGRSSTEVKEHYETLLHDLALIEEG 68
+ EW+W+++K FE L Y E+ + RWE I + V G++ E+K+HYE L+ D+ IE G
Sbjct: 634 TSEWSWEQDKAFENALVTYPEDDSD-RWEKIAVDVPGKTMEEIKQHYELLVDDIGQIEAG 810
Query: 69 LVDF-STNSDDFIISKASTDE 88
V S NS + ++DE
Sbjct: 811 CVPLPSYNSSSEGSTSHASDE 873
>TC88060 homologue to GP|21593278|gb|AAM65227.1 contains similarity to
MYB-related DNA-binding protein {Arabidopsis thaliana},
partial (48%)
Length = 1370
Score = 48.9 bits (115), Expect = 1e-06
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Frame = +3
Query: 82 SKASTDENKAPPTKNKTKKVVRVKHWTEEEHRLFLEGIEIHGKGKWKLISQHVRTRTASQ 141
S+ ++ + + P T K+++ +WTE EH FLE +++ + WK I V ++T Q
Sbjct: 159 SEDASKKIRKPYTITKSRE-----NWTEPEHDKFLEALQLFDRD-WKKIEAFVGSKTVIQ 320
Query: 142 VASHAQKHFLH-QLDGTSK----KTYKKRSNFYITSLKGNSKPLLNKDNIPSPSTSWDGN 196
+ SHAQK+FL Q G ++ K+++ S P+L + +P S
Sbjct: 321 IRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKSAPVLGQ--LPGSFQSSPAL 494
Query: 197 FHP-LLYKDNYVPALPSPHLN 216
P + K+ +P L +P +N
Sbjct: 495 LEPGYIMKNESIPMLETPIMN 557
>TC90910 homologue to GP|21689883|gb|AAM67502.1 unknown protein {Arabidopsis
thaliana}, partial (32%)
Length = 683
Score = 48.1 bits (113), Expect = 3e-06
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +2
Query: 73 STNSDDFIISKASTDENKAPPTKNKTKKVVRV----KHWTEEEHRLFLEGIEIHGKGKWK 128
++NS+ +T + + K +K + + W++EEH FLE +++ + WK
Sbjct: 266 NSNSNSMAAPTTTTTTSGGDASGKKVRKPYTITKSRESWSDEEHDKFLEALQLFDRD-WK 442
Query: 129 LISQHVRTRTASQVASHAQKHFLH-QLDGT 157
I V ++T Q+ SHAQK+FL Q +GT
Sbjct: 443 KIEDFVGSKTVIQIRSHAQKYFLKVQKNGT 532
>TC91702 homologue to GP|21593278|gb|AAM65227.1 contains similarity to
MYB-related DNA-binding protein {Arabidopsis thaliana},
partial (28%)
Length = 676
Score = 47.8 bits (112), Expect = 3e-06
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +1
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQHVRTRTASQVASHAQKHFLH-QLDGTSK 159
WT++EH FLE +++ + WK I V ++T Q+ SHAQK+FL Q GTS+
Sbjct: 313 WTDQEHDKFLEALQLFDRD-WKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSE 471
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.312 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,759,794
Number of Sequences: 36976
Number of extensions: 111688
Number of successful extensions: 560
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of query: 216
length of database: 9,014,727
effective HSP length: 92
effective length of query: 124
effective length of database: 5,612,935
effective search space: 696003940
effective search space used: 696003940
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146842.1