TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146819.13 + phase: 0 
         (97 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC80227 similar to GP|13537198|dbj|BAB40775. histidine kinase {A...    32  0.040
TC92356 similar to PIR|T00842|T00842 probable histidine kinase [...    31  0.069
TC77236 similar to GP|14190491|gb|AAK55726.1 AT4g37830/T28I19_11...    27  0.99
TC82547 weakly similar to GP|8778394|gb|AAF79402.1| F16A14.18 {A...    24  8.4

>TC80227 similar to GP|13537198|dbj|BAB40775. histidine kinase {Arabidopsis
           thaliana}, partial (22%)
          Length = 1693

 Score = 32.0 bits (71), Expect = 0.040
 Identities = 16/49 (32%), Positives = 27/49 (54%)
 Frame = +3

Query: 11  GVETHAVKNGKESLDLISTVERKFDLILMARIMPVMDGITATKKLRDLE 59
           G +   V +GK+++  +     +FD   M   MP MDG  AT ++R++E
Sbjct: 831 GADVVCVSSGKDAISSLKP-PHQFDACFMDIQMPEMDGFEATGRIREME 974


>TC92356 similar to PIR|T00842|T00842 probable histidine kinase [imported] -
           Arabidopsis thaliana, partial (15%)
          Length = 947

 Score = 31.2 bits (69), Expect = 0.069
 Identities = 20/56 (35%), Positives = 30/56 (52%), Gaps = 4/56 (7%)
 Frame = +3

Query: 33  KFDLILMARIMPVMDGITATKKLRDLEYPG----QIVGVSRHLTNDEYAEFCNAGL 84
           ++DLILM   MP MDG  ATK++R  E        IV ++ H  + + A+    G+
Sbjct: 780 QYDLILMDCQMPKMDGYEATKEIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGM 947


>TC77236 similar to GP|14190491|gb|AAK55726.1 AT4g37830/T28I19_110
           {Arabidopsis thaliana}, partial (66%)
          Length = 778

 Score = 27.3 bits (59), Expect = 0.99
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 76  YAEFCNAGLDDLHHEDGIPL 95
           Y  + N G+ ++HH  G+PL
Sbjct: 332 YCGYANMGMQEVHHSGGVPL 273


>TC82547 weakly similar to GP|8778394|gb|AAF79402.1| F16A14.18 {Arabidopsis
           thaliana}, partial (11%)
          Length = 776

 Score = 24.3 bits (51), Expect = 8.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 74  DEYAEFCNAGLDDLHH 89
           D+YA+ CN  L   HH
Sbjct: 771 DDYADRCNCNLRSFHH 724


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,620,962
Number of Sequences: 36976
Number of extensions: 21888
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of query: 97
length of database: 9,014,727
effective HSP length: 73
effective length of query: 24
effective length of database: 6,315,479
effective search space: 151571496
effective search space used: 151571496
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)