BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146819.10 - phase: 0
(328 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC93015 similar to GP|22758329|gb|AAN05533.1 putative WD domain ... 462 e-131
TC78188 similar to PIR|C84870|C84870 probable splicing factor [i... 49 3e-06
TC78591 similar to GP|9759350|dbj|BAB10005.1 WD-repeat protein-l... 44 7e-05
TC79260 weakly similar to GP|9759350|dbj|BAB10005.1 WD-repeat pr... 44 1e-04
TC78914 similar to GP|13937195|gb|AAK50091.1 At1g78070/F28K19_28... 43 2e-04
TC85659 SP|O24076|GBLP_MEDSA Guanine nucleotide-binding protein ... 42 3e-04
TC77248 similar to GP|13489182|gb|AAK27816.1 putative WD-repeat ... 42 3e-04
TC79118 similar to GP|16323188|gb|AAL15328.1 AT5g67320/K8K14_4 {... 41 6e-04
CA917664 similar to GP|16604679|gb putative WD-repeat membrane p... 41 7e-04
TC78038 weakly similar to GP|21592898|gb|AAM64848.1 unknown {Ara... 41 7e-04
TC79342 similar to GP|10177096|dbj|BAB10430. Notchless protein h... 40 0.002
TC78679 similar to GP|20466538|gb|AAM20586.1 putative WD-repeat ... 39 0.003
TC86363 similar to GP|15081811|gb|AAK82560.1 AT3g13340/MDC11_13 ... 39 0.004
TC88481 similar to PIR|T00806|T02445 probable U4/U6 small nuclea... 38 0.005
CB893690 weakly similar to GP|9759025|dbj gene_id:K6A12.9~simila... 38 0.006
TC81483 similar to GP|11994266|dbj|BAB01449. retinoblastoma-bind... 37 0.008
BQ147028 similar to GP|16323188|gb| AT5g67320/K8K14_4 {Arabidops... 37 0.008
TC82910 similar to GP|19347844|gb|AAL86002.1 unknown protein {Ar... 37 0.011
TC86168 homologue to GP|13936812|gb|AAK49947.1 TGF-beta receptor... 37 0.014
TC87928 similar to PIR|A96839|A96839 F23A5.2(form2) [imported] -... 35 0.031
>TC93015 similar to GP|22758329|gb|AAN05533.1 putative WD domain containing
protein {Oryza sativa (japonica cultivar-group)},
partial (34%)
Length = 687
Score = 462 bits (1189), Expect = e-131
Identities = 225/225 (100%), Positives = 225/225 (100%)
Frame = +1
Query: 104 GQTNVGFSPDEQLFFTGTSVEKDSTTGGLLCFFDRVNLELVSKVGISPTCSVVQCSWHPK 163
GQTNVGFSPDEQLFFTGTSVEKDSTTGGLLCFFDRVNLELVSKVGISPTCSVVQCSWHPK
Sbjct: 1 GQTNVGFSPDEQLFFTGTSVEKDSTTGGLLCFFDRVNLELVSKVGISPTCSVVQCSWHPK 180
Query: 164 LNQIFASVGDKSQGGTHILYDPTISERGALVCVARAPRKKSVDDFVANPVIHNPHALPLF 223
LNQIFASVGDKSQGGTHILYDPTISERGALVCVARAPRKKSVDDFVANPVIHNPHALPLF
Sbjct: 181 LNQIFASVGDKSQGGTHILYDPTISERGALVCVARAPRKKSVDDFVANPVIHNPHALPLF 360
Query: 224 RDQPNRKRQREKVLKDPLKSHKPEMPMTGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWM 283
RDQPNRKRQREKVLKDPLKSHKPEMPMTGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWM
Sbjct: 361 RDQPNRKRQREKVLKDPLKSHKPEMPMTGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWM 540
Query: 284 DEDPREAILKYADVAAKEPKFIAPAYAETQPEPLFAKSDSEDEEK 328
DEDPREAILKYADVAAKEPKFIAPAYAETQPEPLFAKSDSEDEEK
Sbjct: 541 DEDPREAILKYADVAAKEPKFIAPAYAETQPEPLFAKSDSEDEEK 675
>TC78188 similar to PIR|C84870|C84870 probable splicing factor [imported] -
Arabidopsis thaliana, partial (95%)
Length = 1436
Score = 48.9 bits (115), Expect = 3e-06
Identities = 42/172 (24%), Positives = 78/172 (44%), Gaps = 6/172 (3%)
Frame = +1
Query: 9 PGRVPVTTCAW-DYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSA 67
P + +T ++ D K GGI D +++W ++ G + + H+D ITS++ S
Sbjct: 688 PDKYQITAVSFSDASDKIYTGGI-DNDVKIWDLRKGEVTMT----LQGHQDMITSMQLSP 852
Query: 68 DGRILLSRSFDDSLKVWDLR---KTKEALKVFEELPNHYGQT--NVGFSPDEQLFFTGTS 122
DG LL+ D L +WD+R +K+ E +++ + G+SPD G+S
Sbjct: 853 DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS 1032
Query: 123 VEKDSTTGGLLCFFDRVNLELVSKVGISPTCSVVQCSWHPKLNQIFASVGDK 174
++ +D + ++ K+ SV +C +HP + + DK
Sbjct: 1033-------DRMVYIWDTTSRRILYKLP-GHNGSVNECVFHPNEPIVGSCSSDK 1164
Score = 42.0 bits (97), Expect = 3e-04
Identities = 24/86 (27%), Positives = 44/86 (50%)
Frame = +1
Query: 14 VTTCAWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILL 73
V T ++ G +A G D I +W++ G + K H++ + L +++DG ++
Sbjct: 322 VYTMKFNPTGSVVASGSHDKEIFLWNVH---GDCKNFMVLKGHKNAVLDLHWTSDGTQII 492
Query: 74 SRSFDDSLKVWDLRKTKEALKVFEEL 99
S S D +L++WD K+ K+ E L
Sbjct: 493 SASPDKTLRLWDTETGKQIKKMVEHL 570
Score = 32.3 bits (72), Expect = 0.26
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Frame = +1
Query: 19 WDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGR-ILLSRSF 77
W DG I D ++++W + G + + H + S + G +++S S
Sbjct: 466 WTSDGTQIISASPDKTLRLWDTETGKQIKKMVE----HLSYVNSCCPTRRGPPLVVSGSD 633
Query: 78 DDSLKVWDLRKTKEALKVFEELPNHYGQTNVGFSPDEQLFFTG 120
D + K+WD+R+ + +++ F P+ Y T V FS +TG
Sbjct: 634 DGTAKLWDMRQ-RGSIQTF---PDKYQITAVSFSDASDKIYTG 750
>TC78591 similar to GP|9759350|dbj|BAB10005.1 WD-repeat protein-like
{Arabidopsis thaliana}, partial (17%)
Length = 916
Score = 44.3 bits (103), Expect = 7e-05
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Frame = +2
Query: 56 HEDDITSLKFSADGRILLSRSFDDSLKVWDLRKTKEALKVFEELPNHYGQ-TNVGFSP-D 113
H+D++ ++FS +G+ L S S D + +W++ +K L H ++V +SP D
Sbjct: 461 HDDEVWFVQFSHNGKYLASASNDQTAIIWEVGVNGVCVK--HRLSGHQKPISSVSWSPND 634
Query: 114 EQLFFTGT--SVEK-DSTTGGLLCFFDRVNLELVSKVGISPTCSVVQCSWHPKLNQIFAS 170
E+L G S+ + D +TG L +++ LVS C+W P I +
Sbjct: 635 EELLTCGVEESIRRWDVSTGKCLQIYEKAGAGLVS------------CTWFPSGKHILSG 778
Query: 171 VGDKS 175
+ DKS
Sbjct: 779 LSDKS 793
Score = 28.5 bits (62), Expect = 3.7
Identities = 17/65 (26%), Positives = 28/65 (42%), Gaps = 4/65 (6%)
Frame = +2
Query: 14 VTTCAWDYDGKCIAGGIGDGSIQVWSIK----PGWGSRPDIHFEKCHEDDITSLKFSADG 69
+ +C W GK I G+ D SI +W + W + + I+ L +ADG
Sbjct: 731 LVSCTWFPSGKHILSGLSDKSICMWELDGKEVESWKGQKSL--------KISDLDITADG 886
Query: 70 RILLS 74
++S
Sbjct: 887 EEIIS 901
>TC79260 weakly similar to GP|9759350|dbj|BAB10005.1 WD-repeat protein-like
{Arabidopsis thaliana}, partial (50%)
Length = 1227
Score = 43.5 bits (101), Expect = 1e-04
Identities = 34/126 (26%), Positives = 61/126 (47%), Gaps = 6/126 (4%)
Frame = +2
Query: 56 HEDDITSLKFSADGRILLSRSFDDSLKVWDLRKTKEALKVFEELPNHY-GQTNVGFSPDE 114
H+D++ ++FS DG+ L + S D + +W++ T + L + +L H ++V +SP+
Sbjct: 542 HDDEVWFVQFSHDGKYLATASNDRTAIIWEV-DTNDGLSMKHKLSGHQKSVSSVSWSPNG 718
Query: 115 QLFFTGTSVEK-----DSTTGGLLCFFDRVNLELVSKVGISPTCSVVQCSWHPKLNQIFA 169
Q T VE+ D +TG L +++ L+S C+W P I +
Sbjct: 719 QELLT-CGVEEAVRRWDVSTGKCLQVYEKNGSGLIS------------CAWFPCGKYILS 859
Query: 170 SVGDKS 175
+ DKS
Sbjct: 860 GLSDKS 877
Score = 28.9 bits (63), Expect = 2.9
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 16 TCAWDYDGKCIAGGIGDGSIQVWSIK----PGWGSRPDIHFEKCHEDDITSLKFSADGRI 71
+CAW GK I G+ D SI +W + W + + I+ L+ + DG
Sbjct: 821 SCAWFPCGKYILSGLSDKSICMWELDGKEVESWKGQKTL--------KISDLEITGDGEH 976
Query: 72 LLSRSFDDSLKVWDLRKTK 90
+LS ++++ +++ ++TK
Sbjct: 977 ILSICKENAILLFN-KETK 1030
>TC78914 similar to GP|13937195|gb|AAK50091.1 At1g78070/F28K19_28 {Arabidopsis
thaliana}, partial (76%)
Length = 1732
Score = 42.7 bits (99), Expect = 2e-04
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Frame = +1
Query: 18 AWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILLSRSF 77
AW +G+ +A G D + ++W I+ I K I SLKF++DG+ L
Sbjct: 1069 AWHPNGQILATGNQDTTCRLWDIR---NLSESIAVLKGRMGAIRSLKFTSDGKFLAMAEP 1239
Query: 78 DDSLKVWDLRK---TKEALKVFEELPNHYGQTNVGFSPDEQLFFTGTSVEKDSTTGGLLC 134
D + ++D + + +F E+ + FSPD + F G + D T G LL
Sbjct: 1240 ADFVHIFDSHSGYVQSQEIDIFGEI------AGLSFSPDTEALFVGVA---DRTYGSLLE 1392
Query: 135 F 135
F
Sbjct: 1393 F 1395
Score = 28.1 bits (61), Expect = 4.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 54 KCHEDDITSLKFSADGRILLSRSFDDSLKVWDLRKTKEALKVFE 97
K H D S + +G+IL + + D + ++WD+R E++ V +
Sbjct: 1039 KGHLDYSFSSAWHPNGQILATGNQDTTCRLWDIRNLSESIAVLK 1170
>TC85659 SP|O24076|GBLP_MEDSA Guanine nucleotide-binding protein beta
subunit-like protein. [Alfalfa] {Medicago sativa},
complete
Length = 1261
Score = 42.0 bits (97), Expect = 3e-04
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +2
Query: 22 DGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILLSRSFDDSL 81
DG+ G DG +++W + G +R + H D+ S+ FS D R ++S S D ++
Sbjct: 281 DGQFALSGSWDGELRLWDLNAGTSARRFVG----HTKDVLSVAFSIDNRQIVSASRDRTI 448
Query: 82 KVWD 85
K+W+
Sbjct: 449 KLWN 460
Score = 30.8 bits (68), Expect = 0.75
Identities = 31/115 (26%), Positives = 45/115 (38%), Gaps = 10/115 (8%)
Frame = +2
Query: 56 HEDDITSLKFSADGRILLSRSFDDSLKVWDLR----------KTKEALKVFEELPNHYGQ 105
H + + S+DG+ LS S+D L++WDL TK+ L V + N +
Sbjct: 245 HSHFVQDVVLSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDN---R 415
Query: 106 TNVGFSPDEQLFFTGTSVEKDSTTGGLLCFFDRVNLELVSKVGISPTCSVVQCSW 160
V S D + T E T D V+ S + PT +V SW
Sbjct: 416 QIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPT--IVSASW 574
>TC77248 similar to GP|13489182|gb|AAK27816.1 putative WD-repeat containing
protein {Oryza sativa}, partial (92%)
Length = 2005
Score = 42.0 bits (97), Expect = 3e-04
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +1
Query: 15 TTCAWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILLS 74
T+ A+ DG + G D +++W +K S+ ++ H +T++ FS +G L +
Sbjct: 1159 TSAAFHPDGLILGTGTTDSLVKIWDVK----SQANVAKFDGHVGHVTAISFSENGYYLAT 1326
Query: 75 RSFDDSLKVWDLRKTK 90
+ D +K+WDLRK K
Sbjct: 1327 AAHD-GVKLWDLRKLK 1371
>TC79118 similar to GP|16323188|gb|AAL15328.1 AT5g67320/K8K14_4 {Arabidopsis
thaliana}, partial (44%)
Length = 1098
Score = 41.2 bits (95), Expect = 6e-04
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Frame = +2
Query: 14 VTTCAWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGR--- 70
V WD G +A D + ++WS+K +H + H +I ++++S G
Sbjct: 326 VNCVKWDPTGTLLASCSDDITAKIWSVKQD----KYLHDFREHSKEIYTIRWSPTGPGTN 493
Query: 71 ------ILLSRSFDDSLKVWDLRKTKEALKVFEELPNH-YGQTNVGFSPDEQLFFTGT 121
+L S SFD ++K+WD+ E K+ L H + +V FSP+ + +G+
Sbjct: 494 NPNKKLLLASASFDSTVKLWDI----ELGKLIHSLNGHRHPVYSVAFSPNGEYIASGS 655
>CA917664 similar to GP|16604679|gb putative WD-repeat membrane protein
{Arabidopsis thaliana}, partial (24%)
Length = 749
Score = 40.8 bits (94), Expect = 7e-04
Identities = 23/64 (35%), Positives = 35/64 (53%)
Frame = +2
Query: 56 HEDDITSLKFSADGRILLSRSFDDSLKVWDLRKTKEALKVFEELPNHYGQTNVGFSPDEQ 115
H D IT L FS DG+ LLS S D SL++WD+ ++ + ++P T + SP+
Sbjct: 242 HTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILARQIDAIQVDVP----ITALSLSPNMD 409
Query: 116 LFFT 119
+ T
Sbjct: 410 ILAT 421
>TC78038 weakly similar to GP|21592898|gb|AAM64848.1 unknown {Arabidopsis
thaliana}, partial (60%)
Length = 1986
Score = 40.8 bits (94), Expect = 7e-04
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Frame = +3
Query: 13 PVTTCAWDYDGKCIAGGIGDGSIQVWSIKPG-----WGSRPDIHFEKCHEDDITSLKFSA 67
P+T A ++ G + GG G I +W ++ G W H +T L FS
Sbjct: 417 PITPLASNHSGTYLVGGGLSGEIYLWEVETGRLLKKWHG---------HNTAVTCLVFSE 569
Query: 68 DGRILLSRSFDDSLKVWDLR------KTKEALKVFE 97
D +L+S + S++VW L + +EA K++E
Sbjct: 570 DDSLLISGFKNGSVRVWSLLMIFDDVRRREASKIYE 677
Score = 28.1 bits (61), Expect = 4.9
Identities = 28/114 (24%), Positives = 47/114 (40%)
Frame = +3
Query: 34 SIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILLSRSFDDSLKVWDLRKTKEAL 93
S+ WS W S+P + + + IT L + G L+ + +W++ +T L
Sbjct: 357 SVFFWS----W-SKPQVEVKSFPSEPITPLASNHSGTYLVGGGLSGEIYLWEV-ETGRLL 518
Query: 94 KVFEELPNHYGQTNVGFSPDEQLFFTGTSVEKDSTTGGLLCFFDRVNLELVSKV 147
K + ++ T + FS D+ L +G LL FD V SK+
Sbjct: 519 KKWH--GHNTAVTCLVFSEDDSLLISGFK-NGSVRVWSLLMIFDDVRRREASKI 671
>TC79342 similar to GP|10177096|dbj|BAB10430. Notchless protein homolog
{Arabidopsis thaliana}, partial (47%)
Length = 873
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/78 (26%), Positives = 42/78 (52%)
Frame = +3
Query: 14 VTTCAWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILL 73
V + A+ DG+ +A G GD +++ W + G++ ++ H++ + + +S DG+ L+
Sbjct: 504 VLSVAFSPDGRQLASGSGDTTVRFWDL----GTQTPMYTCTGHKNWVLCIAWSPDGKYLV 671
Query: 74 SRSFDDSLKVWDLRKTKE 91
S S L WD + K+
Sbjct: 672 SGSMSGELICWDPQTGKQ 725
Score = 31.6 bits (70), Expect = 0.44
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 56 HEDDITSLKFSADGRILLSRSFDDSLKVWDL 86
H + + S+ FS DGR L S S D +++ WDL
Sbjct: 492 HGEAVLSVAFSPDGRQLASGSGDTTVRFWDL 584
>TC78679 similar to GP|20466538|gb|AAM20586.1 putative WD-repeat protein
{Arabidopsis thaliana}, partial (55%)
Length = 1198
Score = 38.9 bits (89), Expect = 0.003
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +1
Query: 15 TTCAWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILLS 74
T C D G I G D +VW + H + IT + DGR +S
Sbjct: 325 TVCFADETGHLIYSGSDDSFCKVWDRRCLNAKDKPAGVLMVHLEGITFIDSRGDGRYFIS 504
Query: 75 RSFDDSLKVWDLRK 88
D ++K+WD+RK
Sbjct: 505 NGKDQTIKLWDIRK 546
Score = 34.3 bits (77), Expect = 0.068
Identities = 22/64 (34%), Positives = 34/64 (52%), Gaps = 2/64 (3%)
Frame = +1
Query: 60 ITSLKFSADGRILLSRSFDDSLKVWDLRKTKEALKVFEELPNHYGQTNVGFSPDE--QLF 117
I SLKFS DG+ L++ + DS+ V+DL K +L++ H N DE L
Sbjct: 193 IFSLKFSTDGKELVAGTSGDSIYVYDLETNKVSLRILA----HTADVNTVCFADETGHLI 360
Query: 118 FTGT 121
++G+
Sbjct: 361 YSGS 372
>TC86363 similar to GP|15081811|gb|AAK82560.1 AT3g13340/MDC11_13 {Arabidopsis
thaliana}, partial (92%)
Length = 1745
Score = 38.5 bits (88), Expect = 0.004
Identities = 32/124 (25%), Positives = 58/124 (45%), Gaps = 1/124 (0%)
Frame = +2
Query: 18 AWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILLSRSF 77
+W+ DG A G D + ++W ++ + K + I S++ S+DG+ +
Sbjct: 1022 SWNPDGVTFATGNQDKTCRIWDMR---NLSKSVAVLKGNLGAIRSIRHSSDGKYMAIAEP 1192
Query: 78 DDSLKVWDLRKTKEALKVFEELPNHYGQ-TNVGFSPDEQLFFTGTSVEKDSTTGGLLCFF 136
D + V+D++ E E+ + +G+ + + FSPD + F G D T G LL +
Sbjct: 1193 ADFVHVYDVKSGYEK----EQEIDFFGEISGISFSPDTESLFIGV---WDRTYGSLLEYG 1351
Query: 137 DRVN 140
R N
Sbjct: 1352 RRHN 1363
>TC88481 similar to PIR|T00806|T02445 probable U4/U6 small nuclear
ribonucleoprotein [imported] - Arabidopsis thaliana,
partial (60%)
Length = 1836
Score = 38.1 bits (87), Expect = 0.005
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Frame = +1
Query: 21 YDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILLSRSFDDS 80
+DG A D +VW ++ G R + E H I + FS +G L + D++
Sbjct: 1357 HDGSLAASCGLDALARVWDLRTG---RSVLALEG-HVKSILGISFSPNGYHLATGGEDNT 1524
Query: 81 LKVWDLRKTKEALKVFEELPNHYGQ-TNVGFSPDEQLFFTGTSVE 124
++WDLRK K + P H + V F P E F S +
Sbjct: 1525 CRIWDLRKKKSLYTI----PAHSNLISQVKFEPQEGYFLVTASYD 1647
Score = 35.0 bits (79), Expect = 0.040
Identities = 24/103 (23%), Positives = 45/103 (43%)
Frame = +1
Query: 18 AWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILLSRSF 77
A+ GK + D + ++W ++ + ++ ++ H + L F DG + S
Sbjct: 1222 AFHPSGKYLGTASYDKTWRLWDVE----TEEELLLQEGHSRSVYGLDFHHDGSLAASCGL 1389
Query: 78 DDSLKVWDLRKTKEALKVFEELPNHYGQTNVGFSPDEQLFFTG 120
D +VWDLR + L + + + G + FSP+ TG
Sbjct: 1390 DALARVWDLRTGRSVLALEGHVKSILG---ISFSPNGYHLATG 1509
Score = 32.7 bits (73), Expect = 0.20
Identities = 29/121 (23%), Positives = 57/121 (46%), Gaps = 6/121 (4%)
Frame = +1
Query: 38 WSIKPGWGSRPDIHFEKCHED-DITSLKFSADGRILLSRSFDDSLKVWDLRKTKEALKVF 96
W++K + ++ F + +D +T FS DG+ L + SF + K+W + K+
Sbjct: 895 WTLKQA--ANLNLEFSEIGDDRPLTGCSFSRDGKGLATCSFTGATKLWSMPNVKKV---- 1056
Query: 97 EELPNHYGQ-TNVGFSPDEQLFFTGTSVEKD----STTGGLLCFFDRVNLELVSKVGISP 151
L H + T+V +SP + S ++ + G LL F + +LE ++++ P
Sbjct: 1057 STLKGHTQRATDVAYSPVHKNHLATASADRTAKYWNDQGALLGTF-KGHLERLARIAFHP 1233
Query: 152 T 152
+
Sbjct: 1234 S 1236
Score = 31.6 bits (70), Expect = 0.44
Identities = 18/70 (25%), Positives = 36/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 22 DGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSA-DGRILLSRSFDDS 80
+G +A G D + ++W ++ + ++ H + I+ +KF +G L++ S+D +
Sbjct: 1486 NGYHLATGGEDNTCRIWDLR----KKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMT 1653
Query: 81 LKVWDLRKTK 90
KVW R K
Sbjct: 1654 AKVWSSRDFK 1683
Score = 28.1 bits (61), Expect = 4.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 56 HEDDITSLKFSADGRILLSRSFDDSLKVWDLRKT 89
HE +TSL DG +++ S D ++K+W T
Sbjct: 1705 HEAKVTSLDVLGDGGYIVTVSHDRTIKLWSXXTT 1806
Score = 27.3 bits (59), Expect = 8.3
Identities = 11/40 (27%), Positives = 22/40 (54%)
Frame = +1
Query: 54 KCHEDDITSLKFSADGRILLSRSFDDSLKVWDLRKTKEAL 93
K H + + + F G+ L + S+D + ++WD+ +E L
Sbjct: 1192 KGHLERLARIAFHPSGKYLGTASYDKTWRLWDVETEEELL 1311
>CB893690 weakly similar to GP|9759025|dbj gene_id:K6A12.9~similar to unknown
protein~sp|O15736 {Arabidopsis thaliana}, partial (59%)
Length = 916
Score = 37.7 bits (86), Expect = 0.006
Identities = 34/148 (22%), Positives = 66/148 (43%), Gaps = 4/148 (2%)
Frame = +3
Query: 17 CAWDYD---GKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILL 73
CA D + + DG+I+VW + G+ + + C+ +L FS DG+ +
Sbjct: 504 CAVDISKVSSRLVVSAAYDGTIKVWDLMKGYCTNTIMFPSICN-----ALCFSTDGQTIF 668
Query: 74 SRSFDDSLKVWDLRKTKEALKVFEELPNH-YGQTNVGFSPDEQLFFTGTSVEKDSTTGGL 132
S D +L++WD+ ++ ++ E+ H + T++ S + + T S L
Sbjct: 669 SGHVDGNLRLWDI----QSGRLLSEVATHSHAVTSISLSRNGNIALT-------SGGDNL 815
Query: 133 LCFFDRVNLELVSKVGISPTCSVVQCSW 160
FD +LE+ + T ++V +W
Sbjct: 816 HNLFDV*SLEVCGT--LRATVNIVASNW 893
>TC81483 similar to GP|11994266|dbj|BAB01449. retinoblastoma-binding
protein-like {Arabidopsis thaliana}, partial (32%)
Length = 684
Score = 37.4 bits (85), Expect = 0.008
Identities = 25/94 (26%), Positives = 44/94 (46%)
Frame = +3
Query: 18 AWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILLSRSF 77
A++ G +A G DGS +W + G ++ +C ITS+ +S G +L+ +
Sbjct: 132 AFNRRGTLLAAGCNDGSCVIWDFEVR-GVAKELRDNECCSP-ITSICWSKGGNRILASAA 305
Query: 78 DDSLKVWDLRKTKEALKVFEELPNHYGQTNVGFS 111
D SL +WD+ K ++ + + N G S
Sbjct: 306 DKSLSLWDVLSGKRIKRIVLQQTPLLARLNPGSS 407
>BQ147028 similar to GP|16323188|gb| AT5g67320/K8K14_4 {Arabidopsis
thaliana}, partial (14%)
Length = 658
Score = 37.4 bits (85), Expect = 0.008
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +3
Query: 14 VTTCAWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGR--- 70
V WD G +A D + ++WS+K IH + H ++ ++++S G
Sbjct: 411 VNCIKWDPTGSLLASCSDDNTAKIWSMKQD----KYIHDFREHSKEVYTIRWSPTGPGTN 578
Query: 71 ------ILLSRSFDDSLKVWD 85
+L S SFD ++K+WD
Sbjct: 579 NPNKKLVLASASFDSTVKLWD 641
>TC82910 similar to GP|19347844|gb|AAL86002.1 unknown protein {Arabidopsis
thaliana}, partial (19%)
Length = 821
Score = 37.0 bits (84), Expect = 0.011
Identities = 20/72 (27%), Positives = 37/72 (50%)
Frame = +1
Query: 16 TCAWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILLSR 75
TC+ +A G DG++++W + G + + H + I SL SA+ L+S
Sbjct: 301 TCSTWLGTSYVATGSNDGAVRLWDSRSG----ECVRTFRGHSESIQSLSLSANQEYLVSA 468
Query: 76 SFDDSLKVWDLR 87
S D + +V+D++
Sbjct: 469 SLDHTARVFDVK 504
>TC86168 homologue to GP|13936812|gb|AAK49947.1 TGF-beta
receptor-interacting protein 1 {Phaseolus vulgaris},
complete
Length = 1322
Score = 36.6 bits (83), Expect = 0.014
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +2
Query: 14 VTTCAWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSLKFSADGRILL 73
+ W K I D I++W + G + + E H+ ITSL SADG
Sbjct: 614 INRAIWGPLNKTIISAGEDAVIRIWDSETGKLLK-ESDKELGHKKTITSLAKSADGSHFC 790
Query: 74 SRSFDDSLKVWDLR 87
+ S D S K+WD R
Sbjct: 791 TGSLDKSAKIWDSR 832
>TC87928 similar to PIR|A96839|A96839 F23A5.2(form2) [imported] -
Arabidopsis thaliana, partial (95%)
Length = 1519
Score = 35.4 bits (80), Expect = 0.031
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +2
Query: 4 PKLARPGRVPVTTCAWDYDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITSL 63
PK + PV AW DG + G D +++W + G G + H+ I +
Sbjct: 359 PKASIAHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSG-GQPITV---AMHDAPIKDI 526
Query: 64 KFSADGRILLSRSFDDSLKVWDLRK 88
+ + +L + S+D ++K WD R+
Sbjct: 527 AWIPEMNLLATGSWDKNIKYWDTRQ 601
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,497,733
Number of Sequences: 36976
Number of extensions: 155077
Number of successful extensions: 794
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of query: 328
length of database: 9,014,727
effective HSP length: 96
effective length of query: 232
effective length of database: 5,465,031
effective search space: 1267887192
effective search space used: 1267887192
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146819.10