BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.7 - phase: 0 /pseudo
(97 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78713 similar to GP|21310093|gb|AAM46142.1 terminal flower-lik... 117 6e-28
TC81061 similar to SP|Q9XFK7|MFT_ARATH MOTHER of FT and TF1 prot... 96 2e-21
BQ137858 35 0.006
AL370819 similar to SP|P46573|APKB_ Protein kinase APK1B (EC 2.7... 28 0.76
AL386356 homologue to GP|3420743|gb|A TipB {Dictyostelium discoi... 26 2.9
TC77809 similar to GP|6136832|dbj|BAA85821.1 CS-IAA2 {Cucumis sa... 25 4.9
TC87709 similar to GP|7767671|gb|AAF69168.1| F27F5.22 {Arabidops... 25 4.9
TC86523 similar to GP|22136030|gb|AAM91597.1 putative protein {A... 25 6.4
AL374845 similar to GP|12247468|gb| PnFL-1 {Ipomoea nil}, partia... 25 6.4
TC83097 similar to GP|12321389|gb|AAG50767.1 hypothetical protei... 24 8.4
>TC78713 similar to GP|21310093|gb|AAM46142.1 terminal flower-like protein 1
{Vitis vinifera}, partial (95%)
Length = 931
Score = 117 bits (294), Expect = 6e-28
Identities = 54/81 (66%), Positives = 64/81 (78%)
Frame = +1
Query: 6 EPLSVGRVIGEVVDIFNPSVRMNVTYSTKQVANGHELMPSIVMNKPRVDIGGEDMRSAYT 65
EPL VGRVIGEV+D F S++M V+Y+ KQV NGHE PS + KP+V+I G DMRS YT
Sbjct: 79 EPLIVGRVIGEVLDSFTTSMKMTVSYNKKQVFNGHEFFPSTINTKPKVEIDGGDMRSFYT 258
Query: 66 LIMTDPDAPSPSDPHLREHLH 86
L+MTDPD P PSDP+LREHLH
Sbjct: 259 LVMTDPDVPGPSDPYLREHLH 321
>TC81061 similar to SP|Q9XFK7|MFT_ARATH MOTHER of FT and TF1 protein.
[Mouse-ear cress] {Arabidopsis thaliana}, complete
Length = 846
Score = 96.3 bits (238), Expect = 2e-21
Identities = 46/86 (53%), Positives = 65/86 (75%)
Frame = +1
Query: 1 MSRPLEPLSVGRVIGEVVDIFNPSVRMNVTYSTKQVANGHELMPSIVMNKPRVDIGGEDM 60
M+ ++PL VGRVIG+VVD+F PSV M+V + K V NG ++ PS+ +N P+V + G +M
Sbjct: 94 MAASVDPLVVGRVIGDVVDMFIPSVGMSVYFGPKHVTNGCDIKPSMAINPPKVTLTG-NM 270
Query: 61 RSAYTLIMTDPDAPSPSDPHLREHLH 86
+ YTL+MTDPDAPSPS+P +RE +H
Sbjct: 271 DNLYTLVMTDPDAPSPSEPSMRELIH 348
>BQ137858
Length = 967
Score = 34.7 bits (78), Expect = 0.006
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 29 VTYSTKQVANGHELMPSIVMNKPRVDIGGEDMRS 62
V+Y+ K V NGHE +P + +PR I G D++S
Sbjct: 9 VSYNKKHVFNGHENLPYTINTRPRDKIDGGDIKS 110
>AL370819 similar to SP|P46573|APKB_ Protein kinase APK1B (EC 2.7.1.-).
[Mouse-ear cress] {Arabidopsis thaliana}, partial (20%)
Length = 416
Score = 27.7 bits (60), Expect = 0.76
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 42 LMPSIVMNKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPHLREHL 85
L+ + VM P + ED RS+ + TDP +PSP+ R+ L
Sbjct: 350 LLTATVMPVP--GLAAEDERSSIQPLKTDPKSPSPNTLSTRKFL 225
>AL386356 homologue to GP|3420743|gb|A TipB {Dictyostelium discoideum},
partial (5%)
Length = 505
Score = 25.8 bits (55), Expect = 2.9
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = -2
Query: 76 PSDPHLREHLH*YSRYH 92
P PH+ HLH Y R+H
Sbjct: 273 PLHPHVLRHLHYYFRFH 223
>TC77809 similar to GP|6136832|dbj|BAA85821.1 CS-IAA2 {Cucumis sativus},
partial (57%)
Length = 1500
Score = 25.0 bits (53), Expect = 4.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 46 IVMNKPRVDIGGEDMRSAYTLI 67
IVM+ PR+ IG E+ +S TL+
Sbjct: 182 IVMSLPRLGIGDEESKSNVTLL 247
>TC87709 similar to GP|7767671|gb|AAF69168.1| F27F5.22 {Arabidopsis
thaliana}, partial (39%)
Length = 1319
Score = 25.0 bits (53), Expect = 4.9
Identities = 10/22 (45%), Positives = 11/22 (49%)
Frame = +2
Query: 76 PSDPHLREHLH*YSRYHRCLFW 97
PSDPH HL HR + W
Sbjct: 527 PSDPHPNWHLGMRGTQHRAVMW 592
>TC86523 similar to GP|22136030|gb|AAM91597.1 putative protein {Arabidopsis
thaliana}, partial (82%)
Length = 1988
Score = 24.6 bits (52), Expect = 6.4
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = -1
Query: 79 PHLREHLH*YSRYHRCL 95
P + HLH*Y ++HR L
Sbjct: 770 PQPKFHLH*YKQFHRAL 720
>AL374845 similar to GP|12247468|gb| PnFL-1 {Ipomoea nil}, partial (25%)
Length = 460
Score = 24.6 bits (52), Expect = 6.4
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +2
Query: 64 YTLIMTDPDAPSPSDPHL---REHLH*YSRYHR 93
+T ++ P +P P PHL R H H R+H+
Sbjct: 191 HTPSLSSPSSPLPPSPHLLHPRPHFH---RFHQ 280
>TC83097 similar to GP|12321389|gb|AAG50767.1 hypothetical protein
{Arabidopsis thaliana}, partial (19%)
Length = 982
Score = 24.3 bits (51), Expect = 8.4
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = +1
Query: 70 DPDAPSPSDPHLREHL 85
DP A P+ PHL++HL
Sbjct: 109 DPAACYPNHPHLQDHL 156
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.141 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,848,106
Number of Sequences: 36976
Number of extensions: 31135
Number of successful extensions: 229
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of query: 97
length of database: 9,014,727
effective HSP length: 73
effective length of query: 24
effective length of database: 6,315,479
effective search space: 151571496
effective search space used: 151571496
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)
Medicago: description of AC146807.7