BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.4 + phase: 0
(919 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 399 e-111
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 302 4e-82
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 120 8e-50
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 117 2e-26
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 113 4e-25
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 58 2e-17
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 71 2e-12
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ... 66 5e-11
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t... 50 4e-06
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 49 9e-06
TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNa... 48 2e-05
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly... 47 3e-05
TC92306 46 6e-05
BG644720 40 0.005
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr... 39 0.007
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 39 0.007
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 39 0.007
CB892255 37 0.035
BG647160 homologue to GP|15004435|gb| maturase {Ionopsis satyrio... 37 0.045
TC86742 similar to PIR|T01541|T01541 hypothetical protein A_IG00... 35 0.13
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 399 bits (1025), Expect = e-111
Identities = 190/197 (96%), Positives = 194/197 (98%)
Frame = -2
Query: 318 KSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNN 377
KSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGH+IPFTARILFECTNN
Sbjct: 591 KSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNN 412
Query: 378 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYF 437
MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHA LIPYRDYARRLLTYF
Sbjct: 411 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF 232
Query: 438 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGE 497
TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIG+VIDQ GE
Sbjct: 231 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGNVIDQTGE 52
Query: 498 NVVDNKPWYHDIKQFLL 514
NVVD KPWY+DIKQFL+
Sbjct: 51 NVVDYKPWYYDIKQFLV 1
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 302 bits (773), Expect = 4e-82
Identities = 133/167 (79%), Positives = 157/167 (93%)
Frame = -2
Query: 222 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKT 281
KTCCALAWAAKRLRHY++NHTTWL+S+MDPIKYIFEK A+TG+IARWQMLLSEYDI +++
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 282 QKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYVKSKDCEEPLIGEGPDPNSKWGLVF 341
QKAIKGSILADHLA+QPL+DY+PI+FDFPDEEIMY+K KDC+EPL GEGPDP+S WGL+F
Sbjct: 455 QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276
Query: 342 DGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 388
DGAVN YG GIGAV+++P+G HIPFTAR+ F+CTNN+AEYEACI GI
Sbjct: 275 DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135
Score = 48.1 bits (113), Expect = 2e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +2
Query: 188 CVLGQQDETGKKEHAIYYLSKKFT 211
CVLGQQDETG+KEHAIYYLS+K +
Sbjct: 38 CVLGQQDETGRKEHAIYYLSRKLS 109
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 120 bits (300), Expect(2) = 8e-50
Identities = 55/114 (48%), Positives = 83/114 (72%)
Frame = +2
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
MPFGL NAG+TYQR + +F D + +EVY+DDM+VKS H+ +L + F+ L +Y
Sbjct: 68 MPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVKSLRATDHLNHLKE*FKTLDEYI 247
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLG 114
++LNP KCTFGV SG+ LG+IV+Q+GIEV+P ++ AI ++P+P+ ++V+ G
Sbjct: 248 MKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAILDLPSPKNSREVQRLTG 409
Score = 96.7 bits (239), Expect(2) = 8e-50
Identities = 49/120 (40%), Positives = 74/120 (60%)
Frame = +3
Query: 114 GRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGR 173
GR+ ++RFIS T C P +KLL N+ VW+++C+EAF+ +K YL PP+L P G
Sbjct: 408 GRIAALNRFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGD 587
Query: 174 PLIMYFAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKR 233
L +Y A+ ++ VL ++D +K I+Y SK+ TD ETRY LEK A+ +A++
Sbjct: 588 TLSLYIAISSTAVSSVLIREDRGEQK--PIFYTSKRMTDPETRYPTLEKMAFAVITSARK 761
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 117 bits (294), Expect = 2e-26
Identities = 76/234 (32%), Positives = 118/234 (49%), Gaps = 2/234 (0%)
Frame = +1
Query: 2 PFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST-DEEQHVEYLTKMFERLRKYK 60
PFGL A AT+QR + H+ + V Y+DD+++ +T ++ H + ++ RL
Sbjct: 832 PFGLTGAPATFQRYINKTLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVLRRLADAG 1011
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQ-KGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYI 119
L L+P KC F V + K +GFI++ KG+ DP K+ AIR+ P + K R FLG NY
Sbjct: 1012 LSLDPKKCEFSVTTVKYVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLGFCNYY 1191
Query: 120 SRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYF 179
FI + P+ +L RK+ P W E + AF +K E P+L +
Sbjct: 1192 KDFIPGYSEITEPLTRLTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTTVET 1371
Query: 180 AVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKR 233
++G VL Q+D TG H + + S++ + E Y + +K A+ WA R
Sbjct: 1372 DCSGFALGGVLTQEDGTG-AAHPVAFHSQRLSPAEYNYPIHDKELLAV-WACLR 1527
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 113 bits (282), Expect = 4e-25
Identities = 63/196 (32%), Positives = 97/196 (49%)
Frame = +2
Query: 536 RFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTHATGHTMSRKLLRAGYYWM 595
R+L D LYK+ D + +RCV E E ++ H + H K+ +AG++W
Sbjct: 17 RYLWDEPFLYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGFWWP 196
Query: 596 TMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRF 655
TM D + KC CQ + N I F +WGID +G +N ++
Sbjct: 197 TMFKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFPSSYNN--KY 370
Query: 656 ILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALC 715
ILVA+DY +KWVEA + VV K ++ I R+GVP +I+D G++ N V + L
Sbjct: 371 ILVAVDYVSKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLL 550
Query: 716 EEFKIEHHNSSPYRPQ 731
++ + H ++ Y PQ
Sbjct: 551 KKNGVRHKVATAYHPQ 598
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 686
Score = 58.2 bits (139), Expect(2) = 2e-17
Identities = 39/122 (31%), Positives = 66/122 (53%), Gaps = 4/122 (3%)
Frame = -3
Query: 765 LHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSL---RVIMEAKLSEAEWCQSRYDQL 821
L +RT R +T +TPFS + +EA+ P EV + SL R+ +L+ ++ L
Sbjct: 462 LWSHRTNPRGATKSTPFSMAHRVEAMAPAEVNVTSL*RSRMPQNIELNN----DRLFNAL 295
Query: 822 NLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQPD-PRGKWTPNY 880
IEE+R A+ R Q+YQ ++++ ++K V + K G++VL + + GK N+
Sbjct: 294 ETIEERRDQALLRIQNYQHQIESYYNKTVKSQPLKLGDIVLCKVFENTKELNAGKLGTNW 115
Query: 881 EG 882
EG
Sbjct: 114 EG 109
Score = 50.1 bits (118), Expect(2) = 2e-17
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = -2
Query: 692 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNI 743
+G+P +I+TDNG++ +N + CE ++I + +SP PQ NG EA+NK I
Sbjct: 685 HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKII 530
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial
(14%)
Length = 1708
Score = 70.9 bits (172), Expect = 2e-12
Identities = 73/353 (20%), Positives = 138/353 (38%), Gaps = 15/353 (4%)
Frame = +2
Query: 564 QLMHDVHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPH 623
+L+ + H+ T H G + +++ ++W + R C C IH+
Sbjct: 176 KLVQESHDSTAAGHP-GRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVC----GGIHIWRQ 340
Query: 624 ALNVISSPWPF-----SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 678
A P P S +D I + P G +++ V +D +K V + +
Sbjct: 341 AKRGFLKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAE 520
Query: 679 VVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEA 738
A+ + +G+P I++D G+N + C + S+ Y PQ +G E
Sbjct: 521 ACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTER 700
Query: 739 ANKNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEI 797
N+ I+ +++ V +D W ++LP R SS GATPF +G V P+
Sbjct: 701 WNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGYH-VDPIPTVE 877
Query: 798 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKT 857
+ V+ E + + + D I+ + + A R ++ + + D+ ++
Sbjct: 878 DTGGVVSEGEAAAQLLVKRMKDVTGFIQAEIVAAQQRSEASANKRRCPADR------YQV 1039
Query: 858 GELV---LKRRISQQPDPRGKW------TPNYEGPYVVKKAFSGGALILTHMD 901
G+ V + S +P + W + P+VV+ G H+D
Sbjct: 1040GDKVWLNVSNYKSPRPSKKLDWLHHKYEVTRFVTPHVVELNVPGTVYPKFHVD 1198
>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(13%)
Length = 415
Score = 66.2 bits (160), Expect = 5e-11
Identities = 38/109 (34%), Positives = 55/109 (49%)
Frame = +3
Query: 353 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 412
G + SP + + R+ F +NN YEA I G+ A ++I+++ Y DS LV +Q
Sbjct: 3 GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182
Query: 413 KGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSS 461
GE+E + Y ++L L IPR EN ADALA L+S
Sbjct: 183 SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALAS 329
>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
partial (6%)
Length = 469
Score = 50.1 bits (118), Expect = 4e-06
Identities = 35/101 (34%), Positives = 52/101 (50%), Gaps = 3/101 (2%)
Frame = +1
Query: 820 QLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVL--KRRISQQPDPRGKWT 877
+LN +EE R+DA + Y+ R K D+++ REF+ GELVL R+ P GK
Sbjct: 103 ELNELEELRLDAYENAKIYKERTKKWHDRRIIRREFREGELVLLFNSRLKLFP---GKLR 273
Query: 878 PNYEGPYVVKKAFSGGAL-ILTHMDGVELPNPVNADIVKKY 917
++ GP+ VK GA+ + + G P VN +K Y
Sbjct: 274 SHWSGPFQVKNVMPSGAVEVWSESTG---PFTVNGQRLKHY 387
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 48.9 bits (115), Expect = 9e-06
Identities = 24/56 (42%), Positives = 31/56 (54%)
Frame = +1
Query: 183 DESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYL 238
D +G L Q+DE EH I Y S+ T E YT++E+ C A WA + RHYL
Sbjct: 7 DWGIGAGLSQKDEENH-EHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYL 171
>TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNase H
{Arabidopsis thaliana}, partial (21%)
Length = 1071
Score = 48.1 bits (113), Expect = 2e-05
Identities = 34/113 (30%), Positives = 50/113 (44%)
Frame = +2
Query: 338 GLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 397
G V+ +N G GA++++ G + + L T AEY A + G++ A K
Sbjct: 563 G*VW*SNINRGPAGAGALLLAEDGSLLYGFRQGLGHQTKESAEYRALLLGLKHASMKGFK 742
Query: 398 HLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDEN 450
++ GDS LVINQI W+ L A L F + HI R+ N
Sbjct: 743 YVTAKGDSELVINQILDPWKIKDEHLKKLCAEALELSDNFHSFRIQHISRERN 901
>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 736
Score = 47.0 bits (110), Expect = 3e-05
Identities = 41/140 (29%), Positives = 63/140 (44%), Gaps = 3/140 (2%)
Frame = +2
Query: 164 PILVPPVEGRPLIMYFAVFDES---MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTML 220
PILV P LI Y D S +GCVL Q E I Y S++ E Y
Sbjct: 17 PILVLP----ELITYVVYTDASITGLGCVLTQH------EKVIAYASRQLRKHEGNYPTH 166
Query: 221 EKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFK 280
+ A+ +A K R YL + + +KYIF + + + RW +++YD+
Sbjct: 167 DLEMAAVVFALKIWRSYLYGAKVQIHTDHKSLKYIFTQPELNLRQRRWMEFVADYDLDI- 343
Query: 281 TQKAIKGSILADHLAYQPLD 300
T K +++AD L+ + +D
Sbjct: 344 TYYPGKANLVADALSRRRVD 403
>TC92306
Length = 521
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/73 (32%), Positives = 36/73 (48%)
Frame = +2
Query: 385 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 444
I G+ EA + +H+ + GD V Q G W+ ++ L + A L + F V + H
Sbjct: 2 ILGLNEARNQGYEHVHVRGDFQXVCKQFXGSWKVNNPNLRNLCNXAVELKSNFKSVSVEH 181
Query: 445 IPRDENQMADALA 457
+PR N ADA A
Sbjct: 182 VPRGXNXAADAQA 220
>BG644720
Length = 678
Score = 39.7 bits (91), Expect = 0.005
Identities = 32/112 (28%), Positives = 49/112 (43%)
Frame = -3
Query: 542 DILYKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDC 601
+ LY ++ VLL C+ E E Q H G+H + + + R GYYW T
Sbjct: 358 ETLYI*LFEGVLL*CLGEEETIQAFQ*AHSRVCGSHKS--KLYFHIKRMGYYWNT----- 200
Query: 602 YQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGH 653
K + A+ I PP L+ + F W +++ G + PK+S GH
Sbjct: 199 ----*IMLKGALLANFIQQPPEVLHPTITS*LFESWELNVFG-LFPKSSGGH 59
>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
sativa (japonica cultivar-group)}, partial (7%)
Length = 674
Score = 39.3 bits (90), Expect = 0.007
Identities = 22/65 (33%), Positives = 32/65 (48%), Gaps = 1/65 (1%)
Frame = +2
Query: 725 SSPYRPQMNGVVEAANKNIKRIVQ-KMVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSH 783
SS Y P +G EA NK + ++ M T W + P+A + Y T+ S TPF
Sbjct: 83 SSAYHP*SDGQSEALNKGXEMYLRCLMFTDPLKWSKAFPWAEYWYNTSYNISAAMTPFKA 262
Query: 784 VYGME 788
+YG +
Sbjct: 263 LYGRD 277
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 39.3 bits (90), Expect = 0.007
Identities = 30/101 (29%), Positives = 44/101 (42%), Gaps = 3/101 (2%)
Frame = +1
Query: 640 DMIGRIEPKASNGHRFILVAIDYFTK--WVEAASYTNVTKQVVAKFIRNNIICRYGVP-S 696
D+ G + + G R+++ ID F + WV Y N T K+ R + + G
Sbjct: 115 DLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKW-RILVETQTGKNVK 291
Query: 697 KIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVE 737
K+ITDN ++ C I H + P PQ NGV E
Sbjct: 292 KLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAE 414
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 39.3 bits (90), Expect = 0.007
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = -3
Query: 651 NGHRFILVAIDYFTKWVEAASYTNVTKQVVA-KFIRNNIICRYGVPSKII-TDNGTNLNN 708
+ H++ + ID +K+ + + + A K + + Y KI+ +DNG +
Sbjct: 383 DNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTS 204
Query: 709 NVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMV 751
++ + I H S PY PQ NGV + NK++ + + ++
Sbjct: 203 YAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLM 75
>CB892255
Length = 853
Score = 37.0 bits (84), Expect = 0.035
Identities = 28/98 (28%), Positives = 46/98 (46%)
Frame = +1
Query: 784 VYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMK 843
V+ ++A+ ++V++ S+ V +AK+ C R ++RG S +
Sbjct: 31 VFNVKALCHMKVKVLSMEVPKKAKID*T*KCYCRVP---------WTVISRG*SKYST-- 177
Query: 844 TAFDKKVHPREFKTGELVLKRRISQQPDPRGKWTPNYE 881
KK PRE + VLK + P+ RGKW PNY+
Sbjct: 178 ----KKARPRECQESGFVLKNML---PNSRGKWMPNYK 270
>BG647160 homologue to GP|15004435|gb| maturase {Ionopsis satyrioides},
partial (2%)
Length = 780
Score = 36.6 bits (83), Expect = 0.045
Identities = 21/69 (30%), Positives = 32/69 (45%)
Frame = +1
Query: 391 AIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDEN 450
AI + I+ + Y DS L +N IK + HH + + + + LHH R+ N
Sbjct: 496 AISLNIEEMVCYSDSLLTVNLIKEDISQHHVYAVLIHNI--KYIMSSRNFTLHHTLREGN 669
Query: 451 QMADALATL 459
Q AD + L
Sbjct: 670 QCADFMVKL 696
>TC86742 similar to PIR|T01541|T01541 hypothetical protein A_IG005I10.16 -
Arabidopsis thaliana, partial (19%)
Length = 2073
Score = 35.0 bits (79), Expect = 0.13
Identities = 29/101 (28%), Positives = 49/101 (47%), Gaps = 7/101 (6%)
Frame = -1
Query: 379 AEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYAR--RLLTY 436
AE+ AC+ IE+A+++ + ++ + DS V+N H IP++ R + +
Sbjct: 396 AEFCACMIAIEKAMELGLNNICLETDSLKVVNAF------HKIVGIPWQMRVRWHNCIRF 235
Query: 437 FTKVE--LHHIPRDENQMADALATLS---SMFRVNHWNDVP 472
+ HIPR+ N +ADALA S+F + W P
Sbjct: 234 CHSIACVCVHIPREGNLVADALARHGQGLSLFFLQWWPAPP 112
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,329,925
Number of Sequences: 36976
Number of extensions: 433623
Number of successful extensions: 2180
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2174
length of query: 919
length of database: 9,014,727
effective HSP length: 105
effective length of query: 814
effective length of database: 5,132,247
effective search space: 4177649058
effective search space used: 4177649058
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146807.4