BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.3 - phase: 0 /pseudo
(1604 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 190 5e-65
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 192 9e-49
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 173 6e-43
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 172 9e-43
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 162 1e-39
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 157 4e-38
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 136 7e-32
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 77 9e-28
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 100 5e-21
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 89 2e-17
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 86 2e-16
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 78 3e-14
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 67 6e-11
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 64 4e-10
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 59 1e-08
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 56 1e-07
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po... 52 2e-06
BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440... 51 4e-06
TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 50 5e-06
CB894419 weakly similar to GP|10177935|db copia-type polyprotein... 50 7e-06
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 190 bits (483), Expect(2) = 5e-65
Identities = 86/141 (60%), Positives = 118/141 (82%)
Frame = -2
Query: 1154 VTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNG 1213
+TR K++LV QGY+Q+E IDY E F+PVAR+EAIR+L+++A G LYQMDVK AF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1214 VIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDT 1273
++EEV+VKQPPGFED + P+HV++L K++YGLKQAP+AWY+RLS FL+KN F+RG++D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1274 TLFRRTLKKDILIVQIYVDDI 1294
TLF + ++LI+Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 77.8 bits (190), Expect(2) = 5e-65
Identities = 37/62 (59%), Positives = 46/62 (73%)
Frame = -3
Query: 1087 SLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRN 1146
S +S IE K V+EAL D WI +MQEEL+QF+R+ VW LVP+P K +IGT+WVFRN
Sbjct: 615 SFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRN 436
Query: 1147 KL 1148
KL
Sbjct: 435 KL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 192 bits (488), Expect = 9e-49
Identities = 90/217 (41%), Positives = 141/217 (64%), Gaps = 1/217 (0%)
Frame = +1
Query: 1329 IQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGM 1388
+++ Q++EG+Y+ Q KY +LL++F +E + P+ P C L K++ G VD Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1389 IGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK 1448
+G L+YL A+RPD+++ + L +RF + E H+ AVKR+ RYL GT NLG++Y+++ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1449 LIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCTQL 1508
L + D+DYAGD +RKSTSG L +SW+SK+Q + +ST +A +I+AA C Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1509 LWMKHQLEDY-QINANIIPIFCDNTAAICLSKNPILH 1544
+WM+ LE + I ++CDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 173 bits (438), Expect = 6e-43
Identities = 91/257 (35%), Positives = 156/257 (60%), Gaps = 5/257 (1%)
Frame = +3
Query: 1089 IGLLSII-ELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNK 1147
+G+L++ + T EEA+ + W +M E+ +RN+ W+L IG KW+F+ K
Sbjct: 15 LGMLTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTK 194
Query: 1148 LNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAI---NHGIILYQM 1204
LNE GE+ + KARLVA+GYSQQ +DYTE FAPVAR + IR++++ A G+ + M
Sbjct: 195 LNENGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M 374
Query: 1205 DVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKN 1264
+ + + + + + + ++K+++YGLKQAP+AWY R+ + K
Sbjct: 375 *KAHSCMEN*MRKFLLINH----RVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKE 542
Query: 1265 DFERGQVDTTLFRRTLK-KDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGEL 1323
FE+ + TLF + + ILI+ +YVDD+IF + ++ ++F K M+ EF MS +G++
Sbjct: 543 GFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKM 722
Query: 1324 KFFLGIQINQSKEGVYV 1340
+FLG+++ Q+++G+Y+
Sbjct: 723 HYFLGVEVTQNEKGIYI 773
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 172 bits (436), Expect = 9e-43
Identities = 92/199 (46%), Positives = 124/199 (62%)
Frame = +1
Query: 1104 LSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVA 1163
LSD W+ AM+ E N WDLVP P K IG KWV+R K N G V + KARLVA
Sbjct: 82 LSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVA 261
Query: 1164 QGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQ 1223
+G+SQ DYTETF+PV + IRL+L+ AI + + Q+D+ AFLNG ++EEVY+ Q
Sbjct: 262 KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441
Query: 1224 PPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKD 1283
P GFE + V KL KS+YGLKQAP+AWY+ L++ I+ F + + D +L
Sbjct: 442 PQGFE-AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGA 618
Query: 1284 ILIVQIYVDDIIFGSTNAS 1302
+ + IYVDDI+ ++AS
Sbjct: 619 CIYLXIYVDDILITGSSAS 675
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 162 bits (410), Expect = 1e-39
Identities = 82/182 (45%), Positives = 114/182 (62%)
Frame = -1
Query: 1098 KTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRK 1157
++ EEA+ D W ++ E +ND W P K + ++W+F K G + RK
Sbjct: 555 RSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIERK 376
Query: 1158 KARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEE 1217
K RLVA+G++ DY ETFAPVA+L IR++LS A+N G L+QMDVK AFL G +E+
Sbjct: 375 KTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELED 196
Query: 1218 EVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFR 1277
EVY+ PPG E L +V +LKK+IYGLKQ+P+AWY++LS L F + ++D TLF
Sbjct: 195 EVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLFT 16
Query: 1278 RT 1279
T
Sbjct: 15 LT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 157 bits (396), Expect = 4e-38
Identities = 88/240 (36%), Positives = 133/240 (54%)
Frame = +2
Query: 1236 VYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDII 1295
V +L+KSIYGLKQA + WY +LS LI + + D +LF + + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1296 FGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKL 1355
+ S + + D FK+ +G L++FLG+++ +SK+G+ ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1356 EDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSD 1415
K TP + L D+ D+ YR +IG L+YLT +RPDI F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1416 SRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLG 1475
++ H A R+ +YLK GL Y + + KL F D+D+A RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 136 bits (342), Expect = 7e-32
Identities = 71/146 (48%), Positives = 95/146 (64%), Gaps = 1/146 (0%)
Frame = +2
Query: 1455 ADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCTQLLWMKHQ 1514
+D+AGD RKSTSG LG ISW+SK+Q +A STAEA YI++ SC TQ +W++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1515 LEDYQINANI-IPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDT 1573
LE N I+CDN +AI LSKNP+ H R+KHI+I+ H IR + + + I++ T
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1574 EHQWADIFTKPLSVERFDFIKKNLNM 1599
E + ADIFTKPL +E F +KK L M
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGM 439
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 77.0 bits (188), Expect(2) = 9e-28
Identities = 32/100 (32%), Positives = 60/100 (60%)
Frame = +3
Query: 1500 SAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRY 1559
S C + +WM+ +E+ I ++CD+ +A+ +++NP HSR KHI I++HF+R
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVRE 407
Query: 1560 YVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
V++G +D+Q I T AD TK ++ ++F + + + +
Sbjct: 408 VVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRSSYGL 527
Score = 66.6 bits (161), Expect(2) = 9e-28
Identities = 34/78 (43%), Positives = 51/78 (64%)
Frame = +1
Query: 1424 VKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWAS 1483
VKRI RY+KGT+ + + + S + + G+ D+D+AGD +RKST+G L +SW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGGS-ELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1484 KRQATIAMSTAEA*YISA 1501
K Q +A+ST EA Y++A
Sbjct: 178 KLQTVVALSTTEAEYMAA 231
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 100 bits (249), Expect = 5e-21
Identities = 55/163 (33%), Positives = 90/163 (54%), Gaps = 2/163 (1%)
Frame = +1
Query: 1423 AVKRIFRYLKGTTNLGLLYRKSLDYK--LIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1480
A+K + +YL + L Y K+ + L G+ DADYAG+ RKS SG L IS
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1481 WASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKN 1540
W + +Q+ + +ST +A YI+ +W+K + + I + I CD+ +AI L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 1541 PILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTK 1583
+ H R KHI+I+ HFIR ++ + ++ + +E AD+FTK
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 88.6 bits (218), Expect = 2e-17
Identities = 49/122 (40%), Positives = 72/122 (58%), Gaps = 3/122 (2%)
Frame = +1
Query: 1399 RPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLY---RKSLDYKLIGFCDA 1455
RPDI +SV + ++F D R+ HL A RI RY++GT GLL+ KS Y+LI + D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1456 DYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCTQLLWMKHQL 1515
D+ GD R+STSG + ISW +K+Q A+S+ EA YI+ Q LW+ +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1516 ED 1517
++
Sbjct: 472 KE 477
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 85.5 bits (210), Expect = 2e-16
Identities = 43/86 (50%), Positives = 59/86 (68%)
Frame = +2
Query: 1128 LVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAI 1187
LV KP IG +W+++ K NE G + + KARLVA+GY +Q+ ID+ E FAPV R+E I
Sbjct: 65 LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRIETI 244
Query: 1188 RLLLSYAINHGIILYQMDVKGAFLNG 1213
LLL+ A +G ++ +DVK AFLNG
Sbjct: 245 *LLLALAATNGC*IHHIDVKIAFLNG 322
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 77.8 bits (190), Expect = 3e-14
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Frame = +1
Query: 1248 QAPKAWYDRLSNFLIKNDFERGQVDTTLFRR---TLKKDILIVQIYVDDIIFGSTNASLC 1304
Q+P+ W+DR + + K + + Q D +F + T+KK ILIV YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 1305 KDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTP 1364
K L+ +EF++ +G LK+FLG+++ + K+G + Q KY +LLK+ ++ CK + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 1365 MHPTC 1369
C
Sbjct: 355 YGCNC 369
Score = 53.5 bits (127), Expect = 6e-07
Identities = 25/56 (44%), Positives = 35/56 (61%)
Frame = +2
Query: 1357 DCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARF 1412
D K TPM T L D GT+VD+ Y+ ++G L+YL+ +RPDI F VC ++F
Sbjct: 332 DVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 67.0 bits (162), Expect = 6e-11
Identities = 38/104 (36%), Positives = 56/104 (53%)
Frame = -3
Query: 1393 LYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGF 1452
+ LT P+I FS+ L +R+ S H +K I +YLKG ++GL Y K LIG+
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1453 CDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA 1496
+A Y D + +S +G G +ISW S + +TIA S+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 64.3 bits (155), Expect = 4e-10
Identities = 31/71 (43%), Positives = 42/71 (58%)
Frame = +2
Query: 1529 CDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVE 1588
CD +A L+ NP+ HSR KHI I HF+R VQ+G L +Q + T Q AD TKPLS
Sbjct: 29 CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208
Query: 1589 RFDFIKKNLNM 1599
R ++ + +
Sbjct: 209 RHQLLRNKIGV 241
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 59.3 bits (142), Expect = 1e-08
Identities = 37/96 (38%), Positives = 51/96 (52%)
Frame = -2
Query: 1178 FAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVY 1237
F P+ +L I LLS + L +DVK AFL G + E++Y+ QP GF + V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGF-S*EVGKMVG 378
Query: 1238 KLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDT 1273
KLKKS+YGLKQ P+ L + F R ++ T
Sbjct: 377 KLKKSMYGLKQGPRQCI*SLKALCTRKGF-RSEIST 273
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse transcriptase
homolog - rape retrotransposon copia-like (fragment),
partial (84%)
Length = 249
Score = 55.8 bits (133), Expect = 1e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = -1
Query: 1215 IEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNF 1260
+EE++Y+ QP GF DHV KL+KS+YGLKQ+P+ WY R ++
Sbjct: 246 LEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSY 109
>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
{Oryza sativa}, partial (1%)
Length = 638
Score = 51.6 bits (122), Expect = 2e-06
Identities = 55/205 (26%), Positives = 91/205 (43%), Gaps = 7/205 (3%)
Frame = +2
Query: 1009 IQEVESSPEAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELI 1068
+ +VE+S EI + +S+ E + S E + FQ+ TQ K K SH L+
Sbjct: 20 LDQVEASDLEEIQEDFKSHGEVQEESNYIEEI--KGFQEPTQL---RKIKE*ESH---LV 175
Query: 1069 IGSKDSPRRTRSHF-------RQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQ 1121
+ S H+ + SL + S IE K +A W+ AM++E+ +
Sbjct: 176 TLNSSSKSYHIFHYVGYSFSAKHRASLAAITSNIEPKNYVQAAQ*QEWLAAMEQEIQVLE 355
Query: 1122 RNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPV 1181
N+ L P K + + V++ GE+ + KA+LVA+ + Q E D+ +
Sbjct: 356 ENNTSTLEPLREGKKWVDCRPVYKIIHKANGEIEKYKAQLVAKDFVQVEGEDF*D-LCLS 532
Query: 1182 ARLEAIRLLLSYAINHGIILYQMDV 1206
+ + R LL+ A G L+ MDV
Sbjct: 533 NKDDNCRCLLTIAAAKG*QLHLMDV 607
>BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440.1 [imported]
- Arabidopsis thaliana, partial (20%)
Length = 731
Score = 50.8 bits (120), Expect = 4e-06
Identities = 29/94 (30%), Positives = 48/94 (50%), Gaps = 1/94 (1%)
Frame = +3
Query: 1507 QLLWMKHQLEDYQIN-ANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGI 1565
Q +W++ L + + I DN + I L++NP+ H R HI ++HFIR V+ G
Sbjct: 135 QAMWLQDLLSEVTWEPCEEVVIRIDNQSVIALTRNPVFHGRGNHIHKRYHFIRECVENGQ 314
Query: 1566 LDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
++++ + E A I TK L F I+ + M
Sbjct: 315 VEVEHVPGEKHRAYI*TKALGRIIFREIRYYIGM 416
>TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (61%)
Length = 1288
Score = 50.4 bits (119), Expect = 5e-06
Identities = 58/238 (24%), Positives = 95/238 (39%), Gaps = 6/238 (2%)
Frame = +3
Query: 32 LQLLKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVE-DLVSSLKVHEMSLNE 90
L+++KK +S+ S+ P P + AK N + + S + S ++
Sbjct: 267 LKVVKKEESSSEESSESEDEQPVVKAPAPSKKTPAKKGNVKKAQPETTSEESDSDSSSSD 446
Query: 91 HETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQS-VKMAMLSNKLEYLAR 149
E KK S A+PSK + S+ A K SEEE + SDED+ A+ S A+
Sbjct: 447 EEEVKKPVSKAVPSK---NGSAPAKKVDTSEEEDSEESSDEDKKPAAKAVPSKNGSAPAK 617
Query: 150 KQKKFLSKRGSYKNSKKEDQKGCFNC--KKPGHFIADCPDLQK--EKYKVKSKKSSFSSS 205
K + +ED+K K G A D + E + ++ ++
Sbjct: 618 KAASDEEDTDESSDEDEEDEKPAAKAVPSKNGSVPAKKADTESSDEDSESSDEEDKKPAA 797
Query: 206 KFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSEAESDSEDEN 263
K K + D ES + +E D+DAK + A ++SD ED++
Sbjct: 798 KASKNVSAPTKKAASSSDEESDEESDE-DEDAKPVSKPAAVAKKSKKDSSDSDDEDDD 968
>CB894419 weakly similar to GP|10177935|db copia-type polyprotein {Arabidopsis
thaliana}, partial (2%)
Length = 170
Score = 50.1 bits (118), Expect = 7e-06
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +3
Query: 1344 KYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTAS 1398
K ++LKKFK+E K ++TP+ L++E G VD Y+ +IGSL YLTA+
Sbjct: 6 KCASDILKKFKMEHSKPISTPVEEKLKLTRESDGKRVDSTHYKSLIGSLRYLTAT 170
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.333 0.143 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,238,997
Number of Sequences: 36976
Number of extensions: 652839
Number of successful extensions: 6054
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 3458
Number of HSP's successfully gapped in prelim test: 357
Number of HSP's that attempted gapping in prelim test: 2278
Number of HSP's gapped (non-prelim): 4184
length of query: 1604
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1495
effective length of database: 4,984,343
effective search space: 7451592785
effective search space used: 7451592785
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 65 (29.6 bits)
Medicago: description of AC146807.3