BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146793.2 - phase: 0
(438 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79189 similar to GP|21593647|gb|AAM65614.1 replication protein... 382 0.0
TC87124 weakly similar to GP|21593647|gb|AAM65614.1 replication ... 345 3e-95
TC78552 weakly similar to GP|10177322|dbj|BAB10648. ATP-dependen... 168 1e-84
TC87125 weakly similar to GP|10177322|dbj|BAB10648. ATP-dependen... 222 2e-58
TC78248 similar to GP|16323192|gb|AAL15330.1 At2g47330/T8I13.17 ... 154 9e-57
TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA heli... 214 5e-56
TC76342 similar to PIR|A86444|A86444 probable RNA helicase [impo... 211 3e-55
TC77771 homologue to GP|6137207|gb|AAF04377.1| P72 DEAD box prot... 204 4e-53
TC76958 homologue to SP|P41382|IF4U_TOBAC Eukaryotic initiation ... 201 6e-52
TC78036 homologue to PIR|T06824|T06824 translation initiation fa... 197 7e-51
TC76575 homologue to SP|Q40465|IF4V_TOBAC Eukaryotic initiation ... 196 2e-50
TC77964 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_9... 193 1e-49
TC79034 similar to GP|10177293|dbj|BAB10554. ATP-dependent RNA h... 132 2e-49
TC89152 similar to PIR|H84854|H84854 probable ATP-dependent RNA ... 182 2e-46
TC87653 similar to PIR|D96799|D96799 hypothetical protein F22K20... 152 2e-45
TC89900 similar to GP|9759355|dbj|BAB10010.1 RNA helicase-like p... 179 2e-45
TC79326 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_9... 176 2e-44
TC86802 similar to GP|7939577|dbj|BAA95778.1 ATP-dependent RNA h... 174 5e-44
TC77435 similar to GP|7211427|gb|AAF40306.1| RNA helicase {Vigna... 160 9e-40
AL385717 similar to GP|2443870|gb| R27090_2 {Homo sapiens}, part... 147 8e-36
>TC79189 similar to GP|21593647|gb|AAM65614.1 replication protein A1-like
{Arabidopsis thaliana}, partial (79%)
Length = 1251
Score = 382 bits (981), Expect(2) = 0.0
Identities = 191/193 (98%), Positives = 192/193 (98%)
Frame = +2
Query: 175 LNEILGMIPRERRTFLFSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPA 234
LNEILGMIPRERRTFLFSATMT KVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPA
Sbjct: 671 LNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPA 850
Query: 235 KHKDCYLVYILSEMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALN 294
KHKDCYLVYIL+EMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALN
Sbjct: 851 KHKDCYLVYILTEMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALN 1030
Query: 295 KFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLV 354
KFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLV
Sbjct: 1031KFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLV 1210
Query: 355 NQYELEWYVQIEK 367
NQYELEWYVQIEK
Sbjct: 1211NQYELEWYVQIEK 1249
Score = 340 bits (872), Expect(2) = 0.0
Identities = 171/174 (98%), Positives = 173/174 (99%)
Frame = +1
Query: 1 MEEENKEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKT 60
MEEENKEMKSFKDLGLPESLVEACEK+GWK PL+IQIEAIPPALEGKDLIGLAKTGSGKT
Sbjct: 148 MEEENKEMKSFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPALEGKDLIGLAKTGSGKT 327
Query: 61 GAFALPILHALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMV 120
GAFALPILHALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMV
Sbjct: 328 GAFALPILHALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMV 507
Query: 121 QQSVKIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEES 174
QQSVKIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEES
Sbjct: 508 QQSVKIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEES 669
>TC87124 weakly similar to GP|21593647|gb|AAM65614.1 replication protein
A1-like {Arabidopsis thaliana}, partial (37%)
Length = 1053
Score = 345 bits (884), Expect = 3e-95
Identities = 187/309 (60%), Positives = 230/309 (73%), Gaps = 3/309 (0%)
Frame = +1
Query: 5 NKEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKD-LIGLAKTGSGKTGAF 63
++EMKSF DLGL LVEACEK+ W +PL+IQ E IP AL+GKD +IG++ SGK GAF
Sbjct: 115 SEEMKSFTDLGLSVQLVEACEKMRWYSPLKIQTEVIPLALQGKDDVIGISPPRSGKAGAF 294
Query: 64 ALPILHALLEA-PRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQ 122
LPIL ALLEA P N FACV+SP+R+L +I+E F+ LGS+ GVKCA LV D++ Q
Sbjct: 295 VLPILQALLEAGPNLNTSFACVLSPSRDLVFRIAEYFQVLGSQFGVKCATLVEANDIIDQ 474
Query: 123 SVKIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEES-LNEILGM 181
+ +I + PH+IVGT +V HL+ T+GFSLARLKYLV+ EAD LLN+ FEE LN+IL +
Sbjct: 475 TNQILQQPHLIVGTLRQVFYHLRLTQGFSLARLKYLVIHEADLLLNDQFEEQQLNDILSI 654
Query: 182 IPRERRTFLFSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYL 241
IP ERRTFLFS+TMT KV +QR+ LRNP+KI+ SSKYSTV T QQ F+PA KDCYL
Sbjct: 655 IPSERRTFLFSSTMTEKVHMIQRLSLRNPLKIDVSSKYSTVVTQLQQSCFMPAMLKDCYL 834
Query: 242 VYILSEMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDC 301
VYIL+EM G S VFT+TC S LLALIL+NL +AIPI +MSQ K+LGAL +
Sbjct: 835 VYILTEMTGRKSTVFTQTCGSAFLLALILKNLDFRAIPIISYMSQAKKLGALMRSSLEKF 1014
Query: 302 NILLCTDVA 310
NILLC + A
Sbjct: 1015NILLCXEAA 1041
>TC78552 weakly similar to GP|10177322|dbj|BAB10648. ATP-dependent RNA
helicase-like protein {Arabidopsis thaliana}, partial
(42%)
Length = 1309
Score = 168 bits (426), Expect(3) = 1e-84
Identities = 100/191 (52%), Positives = 123/191 (64%), Gaps = 3/191 (1%)
Frame = +3
Query: 83 CVMSPT-RELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVL 141
C S T R A +I+ FEALG GVK AVLV DM Q+ KI + PHIIV TPG+++
Sbjct: 447 CHFSTTFRNFAFEIARYFEALGQHFGVKFAVLVSTSDMEYQTNKILQQPHIIVATPGKLV 626
Query: 142 DHLKNTKGFSLARLKYLVLDEADRLLN--EDFEESLNEILGMIPRERRTFLFSATMTNKV 199
HLK+T FSL +LKYLVLDEA L + + + L ILG IPR R TFLFS + T+KV
Sbjct: 627 KHLKDTPAFSLRKLKYLVLDEAHLLESNYKHIDRQLEFILGKIPRNRTTFLFSDSKTDKV 806
Query: 200 EKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILSEMAGSTSMVFTRT 259
+ +Q V LRNPVKI+ S +Y +QQ +PAK KDCYL + LS+MAG TS+VFT
Sbjct: 807 DMIQSVFLRNPVKIDESIEYP-----EQQQCHMPAKDKDCYLAHTLSQMAGKTSLVFTWA 971
Query: 260 CDSTRLLALIL 270
D LAL L
Sbjct: 972 YDLLLRLALTL 1004
Score = 127 bits (318), Expect(3) = 1e-84
Identities = 66/103 (64%), Positives = 75/103 (72%)
Frame = +1
Query: 274 GLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKD 333
G K I ING MSQ KRL ALN FKSG+C ILLC D+ASRGLDIPAVD VINYDIP + +D
Sbjct: 1009 GFKIILINGFMSQAKRLEALNAFKSGNCKILLCNDLASRGLDIPAVDTVINYDIPDDPRD 1188
Query: 334 YIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLIGKKLPEY 376
Y+H VG +A +GVAIS V+ E W+ IE IGKKLP Y
Sbjct: 1189 YMHHVG---QAAPTGVAISFVSPNEARWFEMIETHIGKKLPVY 1308
Score = 57.8 bits (138), Expect(3) = 1e-84
Identities = 30/54 (55%), Positives = 37/54 (67%), Gaps = 1/54 (1%)
Frame = +1
Query: 6 KEMKSFKDLGLPESLVEACEK-VGWKTPLEIQIEAIPPALEGKDLIGLAKTGSG 58
+EMKSF DLGL LVE CEK + W PL+IQ + IP ALEGKD+ ++ SG
Sbjct: 310 EEMKSFTDLGLSLQLVEVCEKQLDWYDPLKIQAQVIPLALEGKDVYAISPPRSG 471
>TC87125 weakly similar to GP|10177322|dbj|BAB10648. ATP-dependent RNA
helicase-like protein {Arabidopsis thaliana}, partial
(13%)
Length = 748
Score = 222 bits (566), Expect = 2e-58
Identities = 120/202 (59%), Positives = 151/202 (74%), Gaps = 3/202 (1%)
Frame = +1
Query: 5 NKEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKD-LIGLAKTGSGKTGAF 63
++EMKSF DLGL LVEACEK+ W +PL+IQ E IP AL+GKD +IG++ SGK GAF
Sbjct: 142 SEEMKSFTDLGLSVQLVEACEKMRWYSPLKIQTEVIPLALQGKDDVIGISPPRSGKAGAF 321
Query: 64 ALPILHALLEA-PRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQ 122
LPIL ALLEA P N FACV+SP+R+L +I+E F+ LGS+ GVKCA LV D++ Q
Sbjct: 322 VLPILQALLEAGPNLNTSFACVLSPSRDLVFRIAEYFQVLGSQFGVKCATLVEANDIIDQ 501
Query: 123 SVKIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEE-SLNEILGM 181
+ +I + PH+IVGT +V HL+ T+G SLARLKYLV+ EAD LLN+ FEE LN+IL +
Sbjct: 502 TNQILQQPHLIVGTLRQVFYHLRLTQGLSLARLKYLVIHEADLLLNDQFEEQQLNDILSI 681
Query: 182 IPRERRTFLFSATMTNKVEKLQ 203
IP ERRTFLFS+TMT K +Q
Sbjct: 682 IPSERRTFLFSSTMTEKGHMIQ 747
>TC78248 similar to GP|16323192|gb|AAL15330.1 At2g47330/T8I13.17 {Arabidopsis
thaliana}, partial (79%)
Length = 2745
Score = 154 bits (390), Expect(2) = 9e-57
Identities = 88/244 (36%), Positives = 141/244 (57%), Gaps = 4/244 (1%)
Frame = +2
Query: 9 KSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPIL 68
K + +G ++ A +K G++ P IQ +A+P L G+D+IG+AKTGSGKT AF LP++
Sbjct: 896 KHLRTVGFAPQIMGAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMI 1075
Query: 69 HALLEAP---RPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVK 125
+++ P + + +PTRELA QI + + G++ + + GG+ ++Q +
Sbjct: 1076 VHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKE 1255
Query: 126 IAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMIPRE 185
+ I+V TPGR++D LK K ++ R YLVLDEADR+ + FE + I+G I +
Sbjct: 1256 LKAGCEIVVATPGRLIDMLK-MKALAMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPD 1432
Query: 186 RRTFLFSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPA-KHKDCYLVYI 244
R+T LFSATM KVEKL R L +P+++ + + Q + +P+ K +L+
Sbjct: 1433 RQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEK 1612
Query: 245 LSEM 248
L EM
Sbjct: 1613 LHEM 1624
Score = 84.0 bits (206), Expect(2) = 9e-57
Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 3/151 (1%)
Frame = +3
Query: 266 LALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINY 325
L + L G K ++G Q R+ L KFKSG ++L+ TDVA+RGLDI ++ V+N+
Sbjct: 1680 LKVQLGQRGFKVAALHGDKDQSSRMDILQKFKSGAYHVLIATDVAARGLDIKSIKTVVNF 1859
Query: 326 DIPTNSKDYIHRVGRTARAG-RSGVAISLVNQYELEWYVQIEKLIGKKLPEYPANEEEVL 384
DI + ++HR+GRT RAG + GVA +L+ Q E + G+ + A + V
Sbjct: 1860 DIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKE-------ARFAGELVNSLVAAGQNVS 2018
Query: 385 --LLEERVGEAKRLAATKMKESGGKKRRGEG 413
L++ + + + + ++ GG+K +G G
Sbjct: 2019 TELMDLAMKDGRFRSKRDARKGGGRKGKGRG 2111
>TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA helicase
{Arabidopsis thaliana}, partial (89%)
Length = 1982
Score = 214 bits (545), Expect = 5e-56
Identities = 126/368 (34%), Positives = 209/368 (56%), Gaps = 1/368 (0%)
Frame = +2
Query: 11 FKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILHA 70
F+D L L+ + G++ P IQ E+IP AL G D++ AK G+GKT AF++P L
Sbjct: 500 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEK 679
Query: 71 LLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLP 130
+ + N ++ PTRELA+Q S+ + LG + ++ V GG + +++ +
Sbjct: 680 IDQDN--NIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPV 853
Query: 131 HIIVGTPGRVLDHLKNTKGFSLAR-LKYLVLDEADRLLNEDFEESLNEILGMIPRERRTF 189
H++VGTPGR+LD K KG + + LV+DEAD+LL+ +F+ S+ +++ +P R+
Sbjct: 854 HLLVGTPGRILDLAK--KGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQIL 1027
Query: 190 LFSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILSEMA 249
+FSAT V+ + LR P I + T+ + Q Y F+ + K L + S++
Sbjct: 1028MFSATFPVTVKDFKDRYLRKPYIINLMDEL-TLKGITQFYAFVEERQKVHCLNTLFSKLQ 1204
Query: 250 GSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDV 309
+ S++F + + LLA + LG I+ M Q R + F++G C L+CTD+
Sbjct: 1205INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 1384
Query: 310 ASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLI 369
+RG+DI AV++VIN+D P NS+ Y+HRVGR+ R G G+A++LV + +IE+ +
Sbjct: 1385FTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLVTYEDRFNLYRIEQEL 1564
Query: 370 GKKLPEYP 377
G ++ + P
Sbjct: 1565GTEIKQIP 1588
>TC76342 similar to PIR|A86444|A86444 probable RNA helicase [imported] -
Arabidopsis thaliana, partial (80%)
Length = 1651
Score = 211 bits (538), Expect = 3e-55
Identities = 139/360 (38%), Positives = 204/360 (56%), Gaps = 11/360 (3%)
Frame = +3
Query: 2 EEENKEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTG 61
+E+ +K F+D GLPE+++E C+ G++ P IQ A P L+G+DLIG+A TGSGKT
Sbjct: 345 DEKYTPVKRFEDSGLPENVLECCK--GFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTL 518
Query: 62 AFALP-ILHALLE-----APRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVG 115
AF +P I+H + + + + + ++SPTRELA QIS+ G GV+ L G
Sbjct: 519 AFGIPAIMHVMNKRKSKGSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYG 698
Query: 116 GIDMVQQSVKIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEESL 175
G Q + I++GTPGR+ D L L + ++VLDEADR+L+ FE+ +
Sbjct: 699 GTPKGAQISALKSGIDIVIGTPGRIQD-LVEMGICRLQEVSFVVLDEADRMLDMGFEQIV 875
Query: 176 NEILGMIPRERRTFLFSATMTNKVEKL-QRVCLRNPVKIETSSK-YSTVDTLKQQYRFLP 233
ILG R+ +FSAT V L Q NPVK+ S+ S + Q L
Sbjct: 876 RSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLD 1055
Query: 234 AKHKDCYLVYILSEMAGSTS---MVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRL 290
+ +D L+ +L + S +VF T + +L+ G KA+ I+G SQ +R
Sbjct: 1056ERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERT 1235
Query: 291 GALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVA 350
AL+ FK+G C +++ TDVA+RGLDIP V++VIN+ P +DY+HR+GRT RAG+ GVA
Sbjct: 1236KALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVA 1415
>TC77771 homologue to GP|6137207|gb|AAF04377.1| P72 DEAD box protein {Pisum
sativum}, partial (69%)
Length = 1736
Score = 204 bits (520), Expect = 4e-53
Identities = 129/370 (34%), Positives = 200/370 (53%), Gaps = 10/370 (2%)
Frame = +1
Query: 10 SFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILH 69
SF G P ++ + G+ P IQ ++ P AL+ KD++ +AKTGSGKT + LP
Sbjct: 634 SFASSGFPSEILREVQNAGFSAPTPIQAQS*PIALQSKDIVAIAKTGSGKTLGYLLP--- 804
Query: 70 ALLEAPRPNHFF-----ACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSV 124
A + R N+ V+SPTRELA QI ++ + C L GG Q
Sbjct: 805 AFIHLKRTNNNAKMGPTVLVLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLK 984
Query: 125 KIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMIPR 184
I + I+V TPGR+ D L+ + SL ++ YLVLDEADR+L+ FE + +I+ +P
Sbjct: 985 DIDRGADIVVATPGRLNDILEMRR-ISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPA 1161
Query: 185 ERRTFLFSATMTNKVEKLQRVCLRNPVKIETSSKYSTV--DTLKQQYRFLPAKHKDCYLV 242
R+T +F+AT +V ++ L NPV++ + V ++ Q L K L
Sbjct: 1162RRQTLMFTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQHIEVLTYVEKQRRLE 1341
Query: 243 YIL-SEMAGSTSMVFTRTCDSTRLLALILRNLGLK--AIPINGHMSQPKRLGALNKFKSG 299
IL S+ GS ++F C + ++ + RNL + A I+G SQ R LN+F+SG
Sbjct: 1342TILRSQDQGSKIIIF---CSTKKMCDQLARNLTRQFGAAAIHGDKSQADRDHVLNQFRSG 1512
Query: 300 DCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEL 359
+L+ TDVA+RGLD+ + +V+N+D PT +DY+HR+GRT RAG +G+A + +
Sbjct: 1513RTPVLVATDVAARGLDVKDIRVVVNFDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDA 1692
Query: 360 EWYVQIEKLI 369
+ + K++
Sbjct: 1693KHASDLIKIL 1722
>TC76958 homologue to SP|P41382|IF4U_TOBAC Eukaryotic initiation factor
4A-10 (eIF-4A-10) (eIF4A-10). [Common tobacco]
{Nicotiana tabacum}, complete
Length = 1761
Score = 201 bits (510), Expect = 6e-52
Identities = 126/376 (33%), Positives = 202/376 (53%), Gaps = 1/376 (0%)
Frame = +3
Query: 10 SFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILH 69
SF +GL E+L+ G++ P IQ I P ++G D+I A++G+GKT F IL
Sbjct: 288 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQ 467
Query: 70 ALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKL 129
L + A V++PTRELA QI + ALG +GVK VGG + + ++
Sbjct: 468 QLDYSVTECQ--ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 641
Query: 130 PHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMIPRERRTF 189
H++VGTPGRV D L+ + +K VLDEAD +L+ F++ + +I ++P + +
Sbjct: 642 VHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 818
Query: 190 LFSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKH-KDCYLVYILSEM 248
+FSATM + ++ R + PV+I T++ +KQ Y + + K L + +
Sbjct: 819 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETL 998
Query: 249 AGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTD 308
A + S++F T L +R+ +G M Q R + +F+SG +L+ TD
Sbjct: 999 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 1178
Query: 309 VASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKL 368
+ +RG+D+ V +VINYD+PT ++Y+HR+GR+ R GR GVAI+ V + I+K
Sbjct: 1179LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQKF 1358
Query: 369 IGKKLPEYPANEEEVL 384
+ E P+N E+L
Sbjct: 1359YNVLIEELPSNVAELL 1406
>TC78036 homologue to PIR|T06824|T06824 translation initiation factor -
garden pea, complete
Length = 1571
Score = 197 bits (501), Expect = 7e-51
Identities = 113/380 (29%), Positives = 208/380 (54%), Gaps = 1/380 (0%)
Frame = +3
Query: 6 KEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFAL 65
K + SF+++G+ + L+ + G++ P IQ A+ P ++G+D+I A++G+GKT AL
Sbjct: 174 KAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIAL 353
Query: 66 PILHALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVK 125
+ + + R A ++SPTRELA Q + +G I ++ +GG + + K
Sbjct: 354 TVCQVVDTSVREVQ--ALIVSPTRELASQTEKVILTIGDFINIQAHACIGGKSVGEDIRK 527
Query: 126 IAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMIPRE 185
+ H++ GTPGRV D +K + +K LVLDE+D +L+ F++ + ++ +P +
Sbjct: 528 LEHGVHVVSGTPGRVCDMIKR-RTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 704
Query: 186 RRTFLFSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKH-KDCYLVYI 244
+ L SAT+ +++ ++ + +PV+I T++ +KQ + + + K L +
Sbjct: 705 LQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 884
Query: 245 LSEMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNIL 304
+ + +++F T L +RN ++G M Q +R + +F++G +L
Sbjct: 885 YDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSAMHGDMPQRERDAIMGEFRAGTTRVL 1064
Query: 305 LCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQ 364
+ TDV +RGLD+ V +VINYD+P N + YIHR+GR+ R GR GVAI+ V +++
Sbjct: 1065ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRD 1244
Query: 365 IEKLIGKKLPEYPANEEEVL 384
IE+ ++ E P N +++
Sbjct: 1245IEQYYSTQIDEMPMNVADLI 1304
>TC76575 homologue to SP|Q40465|IF4V_TOBAC Eukaryotic initiation factor
4A-11 (eIF-4A-11) (eIF4A-11). [Common tobacco]
{Nicotiana tabacum}, complete
Length = 1627
Score = 196 bits (497), Expect = 2e-50
Identities = 124/381 (32%), Positives = 203/381 (52%), Gaps = 5/381 (1%)
Frame = +1
Query: 9 KSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPIL 68
++F +GL E+L+ G++ P IQ I P ++G D+I A++G+GKT F IL
Sbjct: 253 ETFDAMGLLENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGIL 432
Query: 69 ----HALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSV 124
+ L++ A V++PTRELA QI + ALG +GVK VGG + +
Sbjct: 433 QQLDYGLVQCQ------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 594
Query: 125 KIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMIPR 184
+ H++VGTPGRV D L+ + +K VLDEAD +L+ F++ + +I ++P
Sbjct: 595 ILQTGVHVVVGTPGRVFDMLRR-QSLRSDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPP 771
Query: 185 ERRTFLFSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYI 244
+ + +FSATM + ++ R + PV+I T++ +KQ Y + + +
Sbjct: 772 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCD 951
Query: 245 LSE-MAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNI 303
L E +A + S++F T L +R +G M Q R + +F+SG +
Sbjct: 952 LYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 1131
Query: 304 LLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYV 363
L+ TD+ +RG+D+ V +VINYD+PT ++Y+HR+GR+ R GR GVAI+ V +
Sbjct: 1132LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLEDARMLA 1311
Query: 364 QIEKLIGKKLPEYPANEEEVL 384
I+K + E P+N ++L
Sbjct: 1312DIQKFYNVIVEELPSNVADLL 1374
>TC77964 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_90
{Arabidopsis thaliana}, partial (97%)
Length = 1454
Score = 193 bits (491), Expect = 1e-49
Identities = 127/374 (33%), Positives = 203/374 (53%), Gaps = 9/374 (2%)
Frame = +1
Query: 11 FKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILHA 70
F+D L L+ A G++ P E+Q E IP A+ G D+I AK+G GKT F L L
Sbjct: 223 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 402
Query: 71 LLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEI-GVKCAVLVGGIDM-VQQSVKIAK 128
+ P P A V+ TRELA QI + E + + +K AV GG+++ V + + +
Sbjct: 403 I--DPVPGQVAALVLCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNE 576
Query: 129 LPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNE-DFEESLNEILGMIPRERR 187
PHI+VGTPGR+L L K L +++ +LDE D++L D + + EI + P +++
Sbjct: 577 CPHIVVGTPGRILA-LTRDKDLGLKNVRHFILDECDKMLESLDMRKDVQEIFKLTPHDKQ 753
Query: 188 TFLFSATMTNKVEKLQRVCLRNPVKIETSSKYS-TVDTLKQQYRFLPAKHKDCYLVYILS 246
+FSAT++ ++ + + +++P++I + T+ L Q Y L K+ L +L
Sbjct: 754 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLD 933
Query: 247 EMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLC 306
+ + ++F ++ L +L +I I+ MSQ +RL FK G IL+
Sbjct: 934 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVA 1113
Query: 307 TDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQY-ELEWYVQI 365
TD+ RG+DI V++VINYD+P ++ Y+HRVGR R G G+AI+ V+ + E Q+
Sbjct: 1114TDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQV 1293
Query: 366 EK----LIGKKLPE 375
+ LI K+LPE
Sbjct: 1294QSRF*GLI*KELPE 1335
>TC79034 similar to GP|10177293|dbj|BAB10554. ATP-dependent RNA
helicase-like protein {Arabidopsis thaliana}, partial
(65%)
Length = 1443
Score = 132 bits (331), Expect(2) = 2e-49
Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%)
Frame = +3
Query: 41 PPALEGKDLIGLAKTGSGKTGAFALPILHALLEAPR---PNHFFACVMSPTRELAIQISE 97
P AL G+DLIG+A+TGSGKT ++ LP + + PR V++PTRELA+QI +
Sbjct: 6 PMALTGRDLIGIAETGSGKTLSYLLPAIVHVSAQPRLVQGEGPVVLVLAPTRELAVQIQQ 185
Query: 98 QFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKY 157
+ GS ++C + GG Q + I++ TPGR++D L+ + +L R+ Y
Sbjct: 186 EAMKFGSRSNIRCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLE-AQHTNLQRVTY 362
Query: 158 LVLDEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTNKVEKLQRVCLRNPVKIETSS 217
LVLDEADR+L+ FE + +I+ I +R+T +SAT +VE L R L NP K+ S
Sbjct: 363 LVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVESLARQFLHNPYKVVIGS 542
Query: 218 KYSTVD-TLKQQYRFLPAKHKDCYLVYILSE-MAGSTSMVFTRT 259
Y + ++ Q + K L+ +L E M GS ++FT T
Sbjct: 543 PYLKANQSINQVVEVVTDMEKYNRLIKLLKEVMDGSRILIFTET 674
Score = 82.4 bits (202), Expect(2) = 2e-49
Identities = 41/100 (41%), Positives = 61/100 (61%)
Frame = +1
Query: 270 LRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPT 329
LR G A+ I+G +Q +R L +FKSG I+ TDVA+RGLD+ + V+NYD P+
Sbjct: 706 LRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPS 885
Query: 330 NSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLI 369
+ +DY+HR+GRT RAG G A S ++ + K++
Sbjct: 886 SLEDYVHRIGRTGRAGAKGTAYSFFTSANAKYARDLIKIL 1005
>TC89152 similar to PIR|H84854|H84854 probable ATP-dependent RNA helicase
[imported] - Arabidopsis thaliana, partial (72%)
Length = 1787
Score = 182 bits (463), Expect = 2e-46
Identities = 119/342 (34%), Positives = 190/342 (54%), Gaps = 19/342 (5%)
Frame = +3
Query: 32 PLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILHALLE---APRPN-----HFFAC 83
P +Q AIP +L G+DL+ A+TGSGKT AF PI+ +L A RP + A
Sbjct: 240 PTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILTEQYAQRPRVARTAYPLAL 419
Query: 84 VMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLDH 143
++SPTREL+ QI ++ + + GVK V GG + QQ ++ + I+V TPGR++D
Sbjct: 420 ILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDL 599
Query: 144 LKNTKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMI----PRERRTFLFSATMTNKV 199
L+ + SL ++YL LDEADR+L+ FE + +I+ + P R+T LFSAT ++
Sbjct: 600 LERAR-VSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEI 776
Query: 200 EKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYIL-----SEMAGST-- 252
++L L + + + S+ D + Q+ ++ K +L+ +L +++ G
Sbjct: 777 QRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGL 956
Query: 253 SMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASR 312
++VF T L L G A I+G +Q +R AL FK+G+ IL+ TDVA+R
Sbjct: 957 TLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAAR 1136
Query: 313 GLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLV 354
GLDIP V V+N+D+P + DY+H + + +G++ SL+
Sbjct: 1137GLDIPRVAHVVNFDLPNDIDDYVHXDRKNRTSW*NGISNSLL 1262
Score = 28.5 bits (62), Expect = 5.3
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Frame = +1
Query: 338 VGRTARAGRSGVAISLVNQYELEWYVQIEKLIGKKLPEYPANEEEVLLLEERVGEAKRLA 397
+GRT RAG+ G+A + N L + L+ + E PA R
Sbjct: 1213 IGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPA-------WLTRYAARTPYG 1371
Query: 398 ATKMKESGGKKRRGEGDIGEEDDVDK---YFG 426
+ K +GG R G D+ +E +K Y+G
Sbjct: 1372 GGRNKRTGG-ARFGGRDVRKESSYNKGNDYYG 1464
>TC87653 similar to PIR|D96799|D96799 hypothetical protein F22K20.13
[imported] - Arabidopsis thaliana, partial (38%)
Length = 1068
Score = 152 bits (384), Expect(2) = 2e-45
Identities = 89/253 (35%), Positives = 145/253 (57%), Gaps = 4/253 (1%)
Frame = +2
Query: 11 FKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILHA 70
F+ LGL + ++ G+K P IQ + +P L G D++ +A+TGSGKT AF +P+LH
Sbjct: 92 FETLGLNRDVFSGIKRKGYKVPTPIQRKTMPLILSGIDVVAMARTGSGKTAAFLVPMLHR 271
Query: 71 LLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLP 130
L + ++SPTR+LA Q + + LG ++ ++LVGG M Q ++A+ P
Sbjct: 272 LNQHVPQGGVRGLILSPTRDLAQQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNP 451
Query: 131 HIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMIPRERRTFL 190
II+ TPGR++ HL SL +++Y+V DEAD L F E L++IL + R+T L
Sbjct: 452 DIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLL 631
Query: 191 FSATMTNKVEKLQRVCLRNP--VKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILSEM 248
FSAT+ + + + + LR+P V+++ +K S LK + L + K L+Y++ E+
Sbjct: 632 FSATLPSALAEFAKAGLRDPRLVRLDLETKIS--PDLKLVFFTLRQEEKYAALLYLIREL 805
Query: 249 AGS--TSMVFTRT 259
GS +++F T
Sbjct: 806 IGSDEQTLIFVST 844
Score = 48.1 bits (113), Expect(2) = 2e-45
Identities = 23/59 (38%), Positives = 35/59 (58%)
Frame = +3
Query: 274 GLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSK 332
G++ G M Q R + +F+S +L+ TD+A+RG+DIP +D VIN+D P K
Sbjct: 888 GIRPSVCYGDMDQDARKEHVARFRSRKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPK 1064
>TC89900 similar to GP|9759355|dbj|BAB10010.1 RNA helicase-like protein
{Arabidopsis thaliana}, partial (49%)
Length = 1515
Score = 179 bits (453), Expect = 2e-45
Identities = 119/371 (32%), Positives = 195/371 (52%), Gaps = 17/371 (4%)
Frame = +1
Query: 21 VEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILHALLEAPRPNH- 79
++ + G++ +Q +P L+GKD++ AKTG+GKT AF LP + ++++P N
Sbjct: 334 LKGVKDAGYEKMTIVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPNNRG 513
Query: 80 -----FFACVMSPTRELAIQIS-EQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLP-HI 132
V+ PTRELA Q + E + L + V++GG + + +I K P I
Sbjct: 514 QNQTPILVLVVCPTRELACQAAAEATKLLKYHPTIGAQVVIGGTSLSSEQKRIQKNPCQI 693
Query: 133 IVGTPGRVLDHLKNTKGFS--LARLKYLVLDEADRLLNEDFEESLNEILGMIPRERRTFL 190
++ TPGR+ DH+ NT GF+ L +K LVLDEAD+LL+ F + + +I+ +P++R+T +
Sbjct: 694 LIATPGRLKDHIANTAGFASKLMGVKALVLDEADQLLDMGFRKDIEKIIASVPKQRQTLM 873
Query: 191 FSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQ---QYRFLPA-KHKDCYLVYILS 246
FSAT+ + V ++ V L+ + + + T +T Q + P KH V +
Sbjct: 874 FSATIPDAVHQVCNVALKKDFEFINTVQXGTXETHSQVRXMHLIAPLDKHFSLLSVILKE 1053
Query: 247 EMAGSTS---MVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNI 303
+A +VF T T L+A +L L L I Q R ++F+ I
Sbjct: 1054HIADEVDYKVLVFCTTAMVTSLVASLLGKLDLNVREIYSRKKQGFRNRVSDEFRKSKRLI 1233
Query: 304 LLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYV 363
L+ +DV++RG+D P V +V+ IP + + YIHR+GRT R G+ G I L+ +E +
Sbjct: 1234LVTSDVSARGVDYPDVSLVVQLGIPADKELYIHRLGRTGRIGKEGKGILLLAPWEEFFLA 1413
Query: 364 QIEKLIGKKLP 374
+ L +K P
Sbjct: 1414STKDLPIEKAP 1446
>TC79326 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_90
{Arabidopsis thaliana}, partial (94%)
Length = 1883
Score = 176 bits (446), Expect = 2e-44
Identities = 113/351 (32%), Positives = 189/351 (53%), Gaps = 6/351 (1%)
Frame = +2
Query: 11 FKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILHA 70
F+D L L+ A G++ P E+Q E IP A+ G D++ AK+G GKT F L L
Sbjct: 242 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQ 421
Query: 71 LLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIG-VKCAVLVGGIDM-VQQSVKIAK 128
+ P P A ++ TRELA QI +FE + + +K AV GG+++ V + + +
Sbjct: 422 I--DPVPGQVSALILCHTRELAYQICHEFERFSTYLADLKVAVFYGGVNIKVHKDLLKNE 595
Query: 129 LPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNE-DFEESLNEILGMIPRERR 187
PHI+VGTPGR+L L K SL +++ +LDE D++L D + + +I M P +++
Sbjct: 596 CPHIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQ 772
Query: 188 TFLFSATMTNKVEKLQRVCLRNPVK--IETSSKYSTVDTLKQQYRFLPAKHKDCYLVYIL 245
+FSAT++ ++ + + +++P++ ++ +K T+ L Q Y L + K+ L +L
Sbjct: 773 VMMFSATLSKEIRPVCKKFMQDPMENYVDDEAKL-TLHGLVQHYIKLKEEEKNRKLNDLL 949
Query: 246 SEMAGSTSMVFTRTCDSTRLLALI-LRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNIL 304
+ + ++F ++ + L N +RL FK G IL
Sbjct: 950 DALDFNQVVIFVKSVSRVS*AGQVALWNATFHPYAFILECPTKERLKRYKGFKEGHTRIL 1129
Query: 305 LCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVN 355
+ TD+ RG+DI V++VINYD+P ++ Y+H+VGR R G G+AI+ V+
Sbjct: 1130VATDLVGRGIDIERVNIVINYDMPDSADTYLHKVGRAGRFGTKGLAITFVS 1282
>TC86802 similar to GP|7939577|dbj|BAA95778.1 ATP-dependent RNA helicase
{Arabidopsis thaliana}, partial (52%)
Length = 2777
Score = 174 bits (442), Expect = 5e-44
Identities = 146/531 (27%), Positives = 243/531 (45%), Gaps = 96/531 (18%)
Frame = +1
Query: 1 MEEEN---KEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPAL-EGKDLIGLAKTG 56
++EEN E ++ +L L L++A K+G+K P IQ +P A +GKD+IG A+TG
Sbjct: 484 VDEENIDETEYYAWNELRLHPRLMKAIHKLGFKEPTPIQKACVPAAAHQGKDVIGAAETG 663
Query: 57 SGKTGAFALPILHALLEAPRPNHFFA-------------------CVMSPTRELAIQISE 97
SGKT AF LPIL LLE + +++PTRELA+Q+++
Sbjct: 664 SGKTLAFGLPILQRLLEEREKAESISGVNGEEAAEKYATTGLLRSLIIAPTRELALQVAK 843
Query: 98 QFEALGSEIGVKCAVLV-------GGIDMVQQSVKIAKLPHIIVGTPGRVLDHLKNTKGF 150
+A+ I V+ +V G ++ + ++GT HL
Sbjct: 844 HLKAVAKHINVRVTAIVXRYFTRKAGKTFKSKT*DCGRYSREVMGTYVIWRKHL-----I 1008
Query: 151 SLARLKYLVLDEADRLLNEDFEESLNEILGMIP------------------------RER 186
L L + VLDEADR++ + L I+ M+P ++R
Sbjct: 1009 ELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISSEDNSKDAQNCVTVSSIQKKKR 1188
Query: 187 RTFLFSATMTNKVE---KLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLP---------- 233
+T +FSAT+T + KL+R ++ K ++ +++TL ++ P
Sbjct: 1189 QTLVFSATVTLSADFRKKLKRGSIQK--KQLSTDGLDSIETLSERAGMRPNAAIIDLTNP 1362
Query: 234 ---------------AKHKDCYLVYILSEMAGSTSMVFTRTCDSTRLLALILRNLGLKAI 278
KD +L YIL+ ++VF + + R ++ ILR LG+
Sbjct: 1363 SILAAKIEESFIECTEDDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVW 1542
Query: 279 PINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRV 338
++ M Q RL A+++F+ D IL+ TDVA+RGLDIP V V++Y +P +++ Y+HR
Sbjct: 1543 TLHAQMQQRARLKAMDRFRENDNGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRS 1722
Query: 339 GRTARAGRSGVAISLVNQYELEWYVQIEKLIGK-KLPEYPANEEEVLLLEERVGEAKRLA 397
GRTARA G +I+L++ E + + K K +P + + +R+ A+++
Sbjct: 1723 GRTARASAEGCSIALISPKETSKFASLCKSFSKDNFQRFPVENSYMPEVLKRLSLARQID 1902
Query: 398 ATKMKESGGKKRRG-------------EGDIGEEDDVDKYFGLKDRKSSKK 435
K+S K + E EE+ V+K + +K+S K
Sbjct: 1903 KITRKDSQEKAEKSWFDRNASSVDLVTENYDSEEEQVNK---CRQKKASSK 2046
Score = 30.8 bits (68), Expect = 1.1
Identities = 18/51 (35%), Positives = 23/51 (44%)
Frame = -2
Query: 190 LFSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCY 240
LF TN E R C+ +P +I S T+KQ FL + K CY
Sbjct: 1900 LFDVQETNVSEP--RACMNSPQEIAESCPLKMTCTMKQTLMFLLGRLKQCY 1754
>TC77435 similar to GP|7211427|gb|AAF40306.1| RNA helicase {Vigna radiata},
partial (67%)
Length = 1828
Score = 160 bits (405), Expect = 9e-40
Identities = 114/333 (34%), Positives = 172/333 (51%), Gaps = 14/333 (4%)
Frame = +1
Query: 35 IQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILHALLEAP----RPNHF----FACVMS 86
IQ L+G DL+G A+TG GKT AF LPIL +L P R + V+
Sbjct: 496 IQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKTGYGRVPSVIVLL 675
Query: 87 PTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLDHLKN 146
PTRELA Q+ FE GS +G+ + GG Q K+ + I++GTPGR+ DH++
Sbjct: 676 PTRELANQVYADFELYGSSLGLSACAVYGGAPYGAQETKLRRGVDIVIGTPGRIKDHIER 855
Query: 147 TKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMIP--RERRTFLFSATMTNKVEKLQR 204
L+ LK+ VLDEAD +L F + + ILG + + +T LFSAT+ + V+++
Sbjct: 856 GN-IDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQIST 1032
Query: 205 VCLRNPVKI-ETSSKYSTVDTLKQQYRFLPAKHKD-CYLV--YILSEMAGSTSMVFTRTC 260
L++ K + + ++ LP L+ I +G +++F
Sbjct: 1033KFLKSDKKTADLVGNEKMKASTNVRHIILPCSSTARAQLIPDIIRCYSSGGRTIIFAEKK 1212
Query: 261 DSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVD 320
+S LA +L A ++G + Q +R L F+SG L+ T+VA+RGLDI V
Sbjct: 1213ESASELAGLLPG----ARALHGDIQQSQREITLKGFRSGKFMTLVATNVAARGLDINDVQ 1380
Query: 321 MVINYDIPTNSKDYIHRVGRTARAGRSGVAISL 353
++I + P + + YIHR GRT RAG +GVA+ L
Sbjct: 1381LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 1479
>AL385717 similar to GP|2443870|gb| R27090_2 {Homo sapiens}, partial (22%)
Length = 514
Score = 147 bits (371), Expect = 8e-36
Identities = 76/160 (47%), Positives = 110/160 (68%), Gaps = 1/160 (0%)
Frame = -3
Query: 2 EEENKEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTG 61
E +K+F++LGL L++A + + K P EIQ IPP L GKD IG AKTGSGKT
Sbjct: 476 ETSKNPLKTFEELGLNPWLIDALKAMSIKFPSEIQKACIPPILNGKDCIGGAKTGSGKTA 297
Query: 62 AFALPILHALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQ 121
AFALPIL L E P F +++PTRELA QI++QF LG I +K V+VGG+DM+
Sbjct: 296 AFALPILQKLSEDPFG--VFTLILTPTRELAFQIADQFRVLGKSINLKECVVVGGLDMMS 123
Query: 122 QSVKIAKLPHIIVGTPGRVLDHLKNTK-GFSLARLKYLVL 160
QS+++++ PH+++ TPGR++DH+ ++ L+R+++LVL
Sbjct: 122 QSLQLSRKPHVVIATPGRLVDHINSSAIAPCLSRIRFLVL 3
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.137 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,470,424
Number of Sequences: 36976
Number of extensions: 142304
Number of successful extensions: 894
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of query: 438
length of database: 9,014,727
effective HSP length: 99
effective length of query: 339
effective length of database: 5,354,103
effective search space: 1815040917
effective search space used: 1815040917
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146793.2