BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146791.7 + phase: 0 /pseudo
(694 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp... 67 2e-20
CA919100 homologue to PIR|G90291|G902 endoglucanase precursor [i... 34 0.17
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non... 32 0.63
BQ144057 similar to GP|1483567|emb| viral proteinase {Pseudorabi... 30 2.4
AW697076 similar to GP|16226661|gb| At2g28910/F8N16.20 {Arabidop... 30 3.1
TC81195 similar to GP|15810597|gb|AAL07186.1 unknown protein {Ar... 30 4.1
BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 25 5.7
BI309582 similar to GP|9758127|dbj| SCARECROW gene regulator {Ar... 29 6.9
>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
Arabidopsis thaliana, partial (6%)
Length = 951
Score = 66.6 bits (161), Expect(2) = 2e-20
Identities = 88/253 (34%), Positives = 113/253 (43%), Gaps = 2/253 (0%)
Frame = +3
Query: 125 RWNSDCE*GSG*GS*K*KGIVDV*GGF*ESVRFC*LGLFRCGDG*NGFSDIMEKMD*RMC 184
RW S +*G G*G + V*GGF*+ + C LGLF GF R
Sbjct: 243 RWYSYSK*GCG*G*ETEERSFVV*GGF*KGLSLCRLGLF-------GFCS-------RSV 380
Query: 185 YPFWLMVAQRMSFLWVEVCVRETPFPLFYFYWLQRGC--ML**RL*LMQICLEVIVLGMI 242
FW + + V+ ++ L G M ** L CL IVLG +
Sbjct: 381 CLFWFCGESGLKSVLVQQQLQ----------CL*MGVRQMF**NLWFRLNCLLGIVLGWL 530
Query: 243 MRWLYRIFSLQMTLYFWVRKVGRMSEHCGRL*FFLRRYLG*K*ISIKVCWLV*MFLTLG* 302
++ Y IF+LQ TL K+G+ S G F R L *+*I I+V W V*+ L LG*
Sbjct: 531 IQLWYHIFNLQTTLCC*KLKIGQTSVL*GLHLLFFRLCLV*R*IFIRVAWFV*ISLLLG* 710
Query: 303 RKQRRC*IVRFVLCPLLIWDCG*VETRVVCLFGNLWLTV*NLDCLVGKVGFFLLEVA*FF 362
++ *+ ++ C E +FGNL * L LVG V F+LL *F
Sbjct: 711 VRRLLF*VGKWARYHFCT*VCLSREILGA*VFGNLL*IA*KLG*LVGIVVFYLLAAV*FC 890
Query: 363 *SLS*LRYLSMLF 375
*S * LSM F
Sbjct: 891 *SRF*PLCLSMRF 929
Score = 50.8 bits (120), Expect(2) = 2e-20
Identities = 31/61 (50%), Positives = 40/61 (64%)
Frame = +1
Query: 63 VYFYSSNS*GRFSSNFK*FSSYLFGWKFV*DSG*IVG**VEAGYW*CHFRCSDRVC*E*T 122
++F+S +S*G S *FSSY FG K V*+S I+ * GYW C+F C+ VC*+*T
Sbjct: 55 LHFHSPHS*G*QPSAP**FSSYFFGGKSV*NSRQIIS*SFACGYWFCNFGCAVSVC*K*T 234
Query: 123 N 123
N
Sbjct: 235 N 237
>CA919100 homologue to PIR|G90291|G902 endoglucanase precursor [imported] -
Sulfolobus solfataricus, partial (3%)
Length = 789
Score = 34.3 bits (77), Expect = 0.17
Identities = 22/67 (32%), Positives = 35/67 (51%)
Frame = -1
Query: 628 LAQTGSP*GVYFCLEVDSR*TSYKV*FSISWYIEFRGMFMCVRMWFIGRCSTFIFVLQLL 687
LAQTGS G+ CL S +Y++ + R F+C + +G +TF+ +L +
Sbjct: 582 LAQTGSFEGIRLCLAASS*SVAYQIESDL*RCNSNRSWFVCFWLRCLGIGTTFVSLLFVF 403
Query: 688 WFFMVVG 694
F +VVG
Sbjct: 402 CFTLVVG 382
>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
retroelement reverse transcriptase {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 1262
Score = 32.3 bits (72), Expect = 0.63
Identities = 17/39 (43%), Positives = 24/39 (60%), Gaps = 3/39 (7%)
Frame = +2
Query: 436 LMRRC*GSGVGGYLLIEEGCGIGCWLVDMV---LGMGGW 471
L+ RC* +GVG + I+ GCGI C +D V + + GW
Sbjct: 50 LIYRC*ENGVGVFWWIKRGCGIEC*KLDTVRRGVAL*GW 166
>BQ144057 similar to GP|1483567|emb| viral proteinase {Pseudorabies virus},
partial (5%)
Length = 1295
Score = 30.4 bits (67), Expect = 2.4
Identities = 21/59 (35%), Positives = 31/59 (51%)
Frame = -1
Query: 444 GVGGYLLIEEGCGIGCWLVDMVLGMGGWRMGAGVVLFGGRRLVGLEEGRVGAVLDGLRV 502
G+G + +EE CG+ C + + +G GW +GAG G +G+ RV V G RV
Sbjct: 302 GMGWCVCVEENCGVRCGI--LRVGRAGW-LGAGRAASRGAGGLGV---RVVGVWMGFRV 144
>AW697076 similar to GP|16226661|gb| At2g28910/F8N16.20 {Arabidopsis
thaliana}, partial (21%)
Length = 783
Score = 30.0 bits (66), Expect = 3.1
Identities = 12/31 (38%), Positives = 19/31 (60%)
Frame = +1
Query: 456 GIGCWLVDMVLGMGGWRMGAGVVLFGGRRLV 486
G+G W D GMGGWR+ G+ + +R++
Sbjct: 439 GVGGWTGDGSKGMGGWRVIGGLGWWSDKRIL 531
>TC81195 similar to GP|15810597|gb|AAL07186.1 unknown protein {Arabidopsis
thaliana}, partial (50%)
Length = 788
Score = 29.6 bits (65), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = -1
Query: 650 YKV*FSISWYIEFRGMFMCVRMWFIGRCSTFIFVLQLLWFFMV 692
+K FS ++ F F+ WF+ F F+ LLWFF++
Sbjct: 293 FKHNFSRCNFLRFLRFFLFFCRWFLSFFLLFFFLQWLLWFFLL 165
>BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (39%)
Length = 1358
Score = 24.6 bits (52), Expect(2) = 5.7
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 553 GGGGRGMAVASKIVGVGGG 571
GGGGRG A A+ G GGG
Sbjct: 150 GGGGRGGAEAAGPGGGGGG 206
Score = 22.7 bits (47), Expect(2) = 5.7
Identities = 17/41 (41%), Positives = 19/41 (45%)
Frame = +2
Query: 481 GGRRLVGLEEGRVGAVLDGLRVVWLGVWVMGRILCFGMSGG 521
GG GL G G GLR+V +G W G L G GG
Sbjct: 41 GGAGGGGLAAGGGGG---GLRLVRVGGWGRGGPLRGGWGGG 154
>BI309582 similar to GP|9758127|dbj| SCARECROW gene regulator {Arabidopsis
thaliana}, partial (9%)
Length = 692
Score = 28.9 bits (63), Expect = 6.9
Identities = 18/43 (41%), Positives = 22/43 (50%)
Frame = -1
Query: 467 GMGGWRMGAGVVLFGGRRLVGLEEGRVGAVLDGLRVVWLGVWV 509
G+GGW +G GRR G E RVG +GLR W W+
Sbjct: 638 GVGGW-VGI*SGAVAGRRRSGCGESRVGQDENGLR--WKSEWL 519
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.370 0.171 0.670
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,450,811
Number of Sequences: 36976
Number of extensions: 398766
Number of successful extensions: 5389
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 219
Number of HSP's that attempted gapping in prelim test: 3671
Number of HSP's gapped (non-prelim): 2033
length of query: 694
length of database: 9,014,727
effective HSP length: 103
effective length of query: 591
effective length of database: 5,206,199
effective search space: 3076863609
effective search space used: 3076863609
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC146791.7