BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146790.9 + phase: 0
(1349 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 223 4e-58
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 146 5e-44
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 175 9e-44
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 172 6e-43
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 156 6e-38
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 149 9e-36
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 123 5e-28
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 122 9e-28
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 118 2e-26
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 105 2e-22
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 62 2e-20
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 76 2e-20
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 96 1e-19
TC92872 86 7e-17
BQ122291 83 8e-16
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 79 2e-14
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 78 2e-14
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 74 4e-13
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 72 1e-12
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 69 9e-12
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 223 bits (568), Expect = 4e-58
Identities = 111/230 (48%), Positives = 156/230 (67%)
Frame = +1
Query: 815 TRSKSGIHKPKLPYIGITETYKDTVEPANVKEALTRTLWKEAMQKEFQALMSNKTWILVP 874
TR+K+G KPK + +TE E L+ W +AM+ E++AL+ NKTW LVP
Sbjct: 4 TRTKTGKLKPK---VFLTEPCPQDCENL----PLSDPRWLQAMKTEYKALIDNKTWDLVP 162
Query: 875 YQDQENIVDSKWVFKTKYKSDGSIERRKARLVAKGFQQTAGIDYEETFSPVVKVSTVRVI 934
+ + KWV++ K DGS+ + KARLVAKGF QT G DY ETFSPV+K T+R+I
Sbjct: 163 LPPHKKAIGCKWVYRVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRLI 342
Query: 935 LSIAVHLNWEVRQLDINNAFLNGYLKETVFMHQPEGFVDPTKPNHICKLSKAIYGLKQAP 994
L+IA+ WE++Q+DINNAFLNG+L+E V+M QP+GF + + +CKL+K++YGLKQAP
Sbjct: 343 LTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQPQGF-EAANKSLVCKLNKSLYGLKQAP 519
Query: 995 RAWFDSLKTALLNWGFQNTKSDPSLFLLKGKDHITFLLIYVDDIIVTGSS 1044
RAW++ L +A + +GF ++ DPSL + +L IYVDDI++TGSS
Sbjct: 520 RAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSS 669
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 146 bits (368), Expect(2) = 5e-44
Identities = 66/141 (46%), Positives = 99/141 (69%)
Frame = -2
Query: 898 IERRKARLVAKGFQQTAGIDYEETFSPVVKVSTVRVILSIAVHLNWEVRQLDINNAFLNG 957
I R K++LV +G+ Q GIDY+E FSPV ++ +R++++ A + +++ Q+D+ +AF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 958 YLKETVFMHQPEGFVDPTKPNHICKLSKAIYGLKQAPRAWFDSLKTALLNWGFQNTKSDP 1017
LKE VF+ QP GF D PNH+ +L+K +YGLKQAPRAW++ L LL GF+ K D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1018 SLFLLKGKDHITFLLIYVDDI 1038
+LFLLK + + + +YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 51.6 bits (122), Expect(2) = 5e-44
Identities = 21/54 (38%), Positives = 33/54 (60%)
Frame = -3
Query: 838 TVEPANVKEALTRTLWKEAMQKEFQALMSNKTWILVPYQDQENIVDSKWVFKTK 891
++EP NVKEAL W +MQ+E +K W LVP + + ++ ++WVF+ K
Sbjct: 594 SIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRNK 433
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 175 bits (444), Expect = 9e-44
Identities = 84/182 (46%), Positives = 121/182 (66%)
Frame = -1
Query: 841 PANVKEALTRTLWKEAMQKEFQALMSNKTWILVPYQDQENIVDSKWVFKTKYKSDGSIER 900
P + +EA+ WKE++ E A++ N TW + V S+W+F KYK+DGSIER
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 901 RKARLVAKGFQQTAGIDYEETFSPVVKVSTVRVILSIAVHLNWEVRQLDINNAFLNGYLK 960
+K RLVA+GF T G DY ETF+PV K+ T+R++LS+AV+L W + Q+D+ NAFL G L+
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 961 ETVFMHQPEGFVDPTKPNHICKLSKAIYGLKQAPRAWFDSLKTALLNWGFQNTKSDPSLF 1020
+ V+M+ P G K ++ +L KAIYGLKQ+PRAW++ L T L GF+ ++ D +LF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1021 LL 1022
L
Sbjct: 18 TL 13
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 172 bits (437), Expect = 6e-43
Identities = 98/240 (40%), Positives = 141/240 (57%), Gaps = 1/240 (0%)
Frame = +2
Query: 980 ICKLSKAIYGLKQAPRAWFDSLKTALLNWGFQNTKSDPSLFLLKGKDHITFLLIYVDDII 1039
+C+L K+IYGLKQA R W+ L +L+++G+ + SD SLF T LL+YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1040 VTGSSNNFLQAFIKQLNDVFSLKDLGRLHYFLGIEVQRDASGMYLKQSKYIGDLLKKFKM 1099
+ G+ + +Q L D F +KDLG L YFLG+EV R G+ L Q KY +LL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1100 ENASPCPTPM-ITGRHFTVEGEKLKDPTVFRQAIGGLQYLTHTRPDIAFSVNKLSQYMSS 1158
TP I+ + + D T +R+ IG L YLT TRPDI+F+V +LSQ++S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1159 PTTDHWQGIKRILRYLQGTINYCLHIKPSTDLDITGFSDADWATSIDDRKSMAGQCVFLG 1218
P H+Q R+L+YL+ L +++L ++ F+D+DWAT RKS+ G VFLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 156 bits (394), Expect = 6e-38
Identities = 82/254 (32%), Positives = 137/254 (53%), Gaps = 7/254 (2%)
Frame = +3
Query: 838 TVEPANVKEALTRTLWKEAMQKEFQALMSNKTWILVPYQDQENIVDSKWVFKTKYKSDGS 897
T +P +EA+ W+ +M E +A N TW L + + KW+FKTK +G
Sbjct: 33 TSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGE 212
Query: 898 IERRKARLVAKGFQQTAGIDYEETFSPVVKVSTVRVILSIAVHLNWEVRQLD----INNA 953
IE+ KARLVAKG+ Q G+DY E F+PV + T+R+++++A + + + ++
Sbjct: 213 IEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSC 392
Query: 954 FLNGYLKETVFMHQPEGFVDPTKPNHIC--KLSKAIYGLKQAPRAWFDSLKTALLNWGFQ 1011
N K + H+ + ++ +A+YGLKQAPRAW+ ++ GF+
Sbjct: 393 MEN*MRKFLLINHR-------VM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFE 551
Query: 1012 NTKSDPSLFL-LKGKDHITFLLIYVDDIIVTGSSNNFLQAFIKQLNDVFSLKDLGRLHYF 1070
+ +LF+ L I + +YVDD+I G+ N + F K + F++ DLG++HYF
Sbjct: 552 KCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYF 731
Query: 1071 LGIEVQRDASGMYL 1084
LG+EV ++ G+Y+
Sbjct: 732 LGVEVTQNEKGIYI 773
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 149 bits (375), Expect = 9e-36
Identities = 78/217 (35%), Positives = 127/217 (57%), Gaps = 1/217 (0%)
Frame = +1
Query: 1073 IEVQRDASGMYLKQSKYIGDLLKKFKMENASPCPTPMITGRHFTVEGEKLK-DPTVFRQA 1131
+EV ++ G+Y+ Q KY+ DLL++F ME ++ P+ + +K D T ++Q
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1132 IGGLQYLTHTRPDIAFSVNKLSQYMSSPTTDHWQGIKRILRYLQGTINYCLHIKPSTDLD 1191
+G L YL TRPD+ + ++ +S++M+ PT H +KR+LRYL GTIN + K +
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1192 ITGFSDADWATSIDDRKSMAGQCVFLGETLISWSSRKQKVVSRSSTESEYRALVDLAAEI 1251
+ ++D+D+A +DDRKS +G L +SWSS+KQ VV+ S+T++E+ A A +
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1252 AWIHSLLFELKLPLPRKPILWCDNLSAKALASNPVLH 1288
W+ +L +L ++CDN S L+ NPVLH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 123 bits (308), Expect = 5e-28
Identities = 85/245 (34%), Positives = 129/245 (51%), Gaps = 15/245 (6%)
Frame = -3
Query: 404 TGKVILKGLLKNGLYQLS--DTKGNPYAFVSVKES------WHRRLGHPNNKVLDKVLKS 455
+ ++I +G+ K LY L D N + S WH RLGHP+ + L+ +L
Sbjct: 704 SSQLIGEGVTKGDLYMLEKLDPVSNYKCSFTSSSSLNKDALWHARLGHPHGRALNLMLPG 525
Query: 456 CNVKVPPSDNFSFCEACQYGKMHLLPFKSSSSHAQEPLELVHTDVWGPAPIMSSSGFKYY 515
V + N CEAC GK F +S+ + +L++TD+W AP +S KY+
Sbjct: 524 V---VFENKN---CEACILGKHCKNVFPRTSTVYENCFDLIYTDLW-TAPSLSRDNHKYF 366
Query: 516 VHFIDDFSRFTWIYPLKQKSETVQAFTT-----ENQFNKRIKVIQCDGGGEYKPVQ-KLA 569
V FID+ S++TW+ + K + AF N ++ +IK+++ D GGEY K
Sbjct: 365 VTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSH 186
Query: 570 IDV-GIQFRMSCPYTFQQNGRAERKHRHIAEFGLTLLAQAQMPLHYWWEAFSTAVYLINR 628
+D GI + SCPYT QQNG A+RK++H+ E +L+ QA + STA YLIN
Sbjct: 185 LDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQANV---------STACYLINW 33
Query: 629 LPSQV 633
+P++V
Sbjct: 32 IPTKV 18
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 122 bits (306), Expect = 9e-28
Identities = 62/147 (42%), Positives = 88/147 (59%)
Frame = +2
Query: 1198 ADWATSIDDRKSMAGQCVFLGETLISWSSRKQKVVSRSSTESEYRALVDLAAEIAWIHSL 1257
+DWA + RKS +G LG ISWSS+KQ VV+ S+ E+EY A A + W+ +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1258 LFELKLPLPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNKVVVAYVPT 1317
L + ++CDN SA AL+ NPV H RSKHI+I H IR+ + + +VV+ Y PT
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1318 TDQIADCLTKPLSHTRFSQLRDKLGVI 1344
++IAD TKPL F +L+ LG++
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGMM 442
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 118 bits (295), Expect = 2e-26
Identities = 81/261 (31%), Positives = 123/261 (47%), Gaps = 13/261 (4%)
Frame = +1
Query: 464 DNFSFCEACQY-GKMHLLPFKSSSSHAQEPLELVHTDVWGPAPIMSSSGFKYYVHFIDDF 522
D FC+ + G + F +++ + L+ +H+D+WGP+ + S G +Y + IDDF
Sbjct: 7 DKLEFCKHLLFFGNRKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDF 186
Query: 523 SRFTWIYPLKQKSETVQAF-----TTENQFNKRIKVIQCDGGGEY--KPVQKLAIDVGIQ 575
R W+Y L+ K+ET F E Q K +K + D E+ + + GI
Sbjct: 187 PRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIA 366
Query: 576 FRMSCPYTFQQNGRAERKHRHIAEFGLTLLAQAQM--PLHYWWEAFSTAVYLINRLPSQV 633
+ P QQNG AER R + E +L+ A + W EA STA +L+NR P
Sbjct: 367 RHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSA 546
Query: 634 TQNESPYSLIFHKEPNYKLLKPFGCACYPCLKPYNQHKLQFHTTRCVFLGYSNSHKGYKC 693
+ P + +Y L+ FGC Y + N KL C+FL Y++ KGY+
Sbjct: 547 LDFKVPEDIWSGNLVDYSNLRIFGCPAYALV---NDGKLAPRAGECIFLSYASESKGYRL 717
Query: 694 LNSHGRT---FISRHVIFNED 711
S ++ +SR V FNED
Sbjct: 718 WCSDPKSQKLILSRDVTFNED 780
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 105 bits (261), Expect = 2e-22
Identities = 61/171 (35%), Positives = 101/171 (58%), Gaps = 2/171 (1%)
Frame = +1
Query: 1165 QGIKRILRYLQGTINYCL-HIKPSTDLD-ITGFSDADWATSIDDRKSMAGQCVFLGETLI 1222
Q +K +L+YL ++ L + K + + D + G+ DAD+A ++D RKS++G L T I
Sbjct: 1 QALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTI 180
Query: 1223 SWSSRKQKVVSRSSTESEYRALVDLAAEIAWIHSLLFELKLPLPRKPILWCDNLSAKALA 1282
SW + +Q VV+ S+T++EY A V+ + W+ ++ EL + I CD+ SA LA
Sbjct: 181 SWKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKI-HCDSQSAIHLA 357
Query: 1283 SNPVLHARSKHIEIDVHYIRDQVLQNKVVVAYVPTTDQIADCLTKPLSHTR 1333
++ V H R+KHI+I +H+IRD + ++VV + + + AD TK H R
Sbjct: 358 NHQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTKLKKHAR 510
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 62.4 bits (150), Expect(2) = 2e-20
Identities = 32/104 (30%), Positives = 56/104 (53%)
Frame = +3
Query: 1243 ALVDLAAEIAWIHSLLFELKLPLPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIR 1302
+L E W+ L+ EL + + +CD+ SA +A NP H+R+KHI I H++R
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQITV-YCDSQSALHIARNPAFHSRTKHIGIQYHFVR 404
Query: 1303 DQVLQNKVVVAYVPTTDQIADCLTKPLSHTRFSQLRDKLGVIHS 1346
+ V + V + + T D +AD +TK ++ +F R G++ +
Sbjct: 405 EVVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRSSYGLLET 536
Score = 56.6 bits (135), Expect(2) = 2e-20
Identities = 31/77 (40%), Positives = 46/77 (59%)
Frame = +1
Query: 1167 IKRILRYLQGTINYCLHIKPSTDLDITGFSDADWATSIDDRKSMAGQCVFLGETLISWSS 1226
+KRI+RY++GT + S +L + G+ D+D+A D RKS G L +SW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGGS-ELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1227 RKQKVVSRSSTESEYRA 1243
+ Q VV+ S+TE+EY A
Sbjct: 178 KLQTVVALSTTEAEYMA 228
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 76.3 bits (186), Expect(2) = 2e-20
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 992 QAPRAWFDSLKTALLNWGFQNTKSDPSLFLLKGKD-HITFLLIYVDDIIVTGSSNNFLQA 1050
Q+PR WFD + +G+ ++D ++F+ L++YVDDI +TG ++
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 1051 FIKQLNDVFSLKDLGRLHYFLGIEVQRDASGMYLKQSKYIGDLLKKFKM 1099
L + F +KDLG L YFLG+EV R G + Q KY+ DLLK+ +M
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRM 327
Score = 42.4 bits (98), Expect(2) = 2e-20
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 1101 NASPCPTPM-ITGRHFTVEGEKLKDPTVFRQAIGGLQYLTHTRPDIAFSVNKLSQYM 1156
+ P TPM T + T++ L D +++ +G L YL+HTRPDI+F V +SQ+M
Sbjct: 332 DVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 95.5 bits (236), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +2
Query: 1264 PLPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNKVVVAYVPTTDQIAD 1323
P+ + +L CD LSA L NPV H+R KHI ID+H++RD V Q K+ V +V T DQ+AD
Sbjct: 2 PISQSGLLRCDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLAD 181
Query: 1324 CLTKPLSHTRFSQLRDKLGVIHSPPV 1349
CLTKPLS +R LR+K+GV P+
Sbjct: 182 CLTKPLSKSRHQLLRNKIGVTDGTPI 259
>TC92872
Length = 923
Score = 86.3 bits (212), Expect = 7e-17
Identities = 51/173 (29%), Positives = 92/173 (52%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 MASAANNNKNDL--PSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITS 58
MA+ +N K+ L +S++ KL R N+ WK V ++ G ++ G++ GT E I +
Sbjct: 46 MATNPSNTKSSLILNASITFKLSRKNFRAWKRQVTTLLAGIEVMGHIDGTTPIQTETIIN 225
Query: 59 SDSSKSNNPAFEEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRS 118
+ S + NP + +W DQ ++ +L+SM + ET++ LW +S +RS
Sbjct: 226 NGVS-APNPDYTKWFTLDQLIINLLLSSMTEADSISFASYETARTLWVAIESQFNNTSRS 402
Query: 119 QIIYLKFQFHSIRKGEMKMEDYLIKMKNLADKLKLAGNPISNSNLIIQTLNGL 171
++ + Q KG+ + DYL +K+LAD+L + +S+ ++ + LNGL
Sbjct: 403 HVMSVTNQIQRCTKGDKSITDYLFSVKSLADELAVIDKSLSDDDITLFVLNGL 561
>BQ122291
Length = 487
Score = 82.8 bits (203), Expect = 8e-16
Identities = 42/144 (29%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Frame = -2
Query: 64 SNNPAFEEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYL 123
+ NPA+ EW+ D L W+L+ ++ + ++ + S Q+WDE S +++ L
Sbjct: 465 TRNPAYTEWEDKDSLLCTWILSRISPSLLSRFVLLRHSWQVWDEIHSYCFTQMKTRSRQL 286
Query: 124 KFQFHSIRKGEMKMEDYLIKMKNLADKLKLAGNPISNSNLIIQTLNGLDSEYNPIVVKLS 183
+ + SI KG + +++ +++ +++ L G+P+S+ +LI L L E++PIV ++
Sbjct: 285 RSELRSITKGSRTVSEFIARIRAISESLASIGDPVSHRDLIEVVLEALPEEFDPIVASVN 106
Query: 184 DHT-TLSWVDLQAQLLTFESRIEQ 206
+ +S +L++QLLT ESR E+
Sbjct: 105 AKSEVVSLDELESQLLTQESRKEK 34
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 78.6 bits (192), Expect = 2e-14
Identities = 43/110 (39%), Positives = 60/110 (54%)
Frame = +1
Query: 582 YTFQQNGRAERKHRHIAEFGLTLLAQAQMPLHYWWEAFSTAVYLINRLPSQVTQNESPYS 641
+T QQNG AER +R + E +L A M +W EA TA Y+INR PS V ++P
Sbjct: 82 HTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPME 261
Query: 642 LIFHKEPNYKLLKPFGCACYPCLKPYNQHKLQFHTTRCVFLGYSNSHKGY 691
+ K +Y L FGC Y + KL + +C+FLGY+++ KGY
Sbjct: 262 MWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGY 411
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 78.2 bits (191), Expect = 2e-14
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Frame = +1
Query: 1142 RPDIAFSVNKLSQYMSSPTTDHWQGIKRILRYLQGTINYCL---HIKPSTDLDITGFSDA 1198
RPDI +SV+ +S++M P H RILRY++GT+ Y L + S ++ +SD+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1199 DWATSIDDRKSMAGQCVFLGETLISWSSRKQKVVSRSSTESEYRALVDLAAEIAWIHSLL 1258
DW DR+S +G + ISW ++KQ + + SS E+EY A + W+ S++
Sbjct: 301 DWC---GDRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1259 FELK 1262
ELK
Sbjct: 472 KELK 483
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 73.9 bits (180), Expect = 4e-13
Identities = 32/91 (35%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = -2
Query: 622 AVYLINRLPSQVTQNESPYSLIFHKEPNYKLLKPFGCACYPCLKPYNQHKLQFHTTRCVF 681
A YLINR+P++V ++++P+ ++ ++P+ ++ FGC CY + ++KL+ + + +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 682 LGYSNSHKGYKCLNSHG-RTFISRHVIFNED 711
+GYS + KGYKC + R +SR V F E+
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEE 432
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 72.0 bits (175), Expect = 1e-12
Identities = 31/78 (39%), Positives = 53/78 (67%)
Frame = +2
Query: 885 KWVFKTKYKSDGSIERRKARLVAKGFQQTAGIDYEETFSPVVKVSTVRVILSIAVHLNWE 944
+W++K K DG++ + KARLVAKG+ + GID++E F+PVV++ T+ ++L++A
Sbjct: 104 RWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATNGC* 283
Query: 945 VRQLDINNAFLNGYLKET 962
+ +D+ AFLNG+ T
Sbjct: 284 IHHIDVKIAFLNGHFVGT 337
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 69.3 bits (168), Expect = 9e-12
Identities = 39/91 (42%), Positives = 53/91 (57%)
Frame = -2
Query: 922 FSPVVKVSTVRVILSIAVHLNWEVRQLDINNAFLNGYLKETVFMHQPEGFVDPTKPNHIC 981
F P+VK++T+ +LSI N + LD+ AFL G L E ++MHQPEGF +
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGF-S*EVGKMVG 378
Query: 982 KLSKAIYGLKQAPRAWFDSLKTALLNWGFQN 1012
KL K++YGLKQ PR SLK GF++
Sbjct: 377 KLKKSMYGLKQGPRQCI*SLKALCTRKGFRS 285
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,178,305
Number of Sequences: 36976
Number of extensions: 702618
Number of successful extensions: 3797
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 3667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3764
length of query: 1349
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1241
effective length of database: 5,021,319
effective search space: 6231456879
effective search space used: 6231456879
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC146790.9