TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146790.4 - phase: 0 
         (147 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB892264 weakly similar to GP|17131851|dbj serine proteinase {No...    31  0.21
TC91582 similar to GP|6041858|gb|AAF02167.1| unknown protein {Ar...    27  3.9
TC87179 similar to PIR|T45627|T45627 replication factor A-like p...    26  5.1
AW257403 weakly similar to GP|12039277|gb| hypothetical protein ...    25  8.7
TC90046 similar to GP|19310699|gb|AAL85080.1 putative mitochondr...    25  8.7
TC87794 similar to GP|13775107|gb|AAK39130.1 bZIP transcription ...    25  8.7

>CB892264 weakly similar to GP|17131851|dbj serine proteinase {Nostoc sp. PCC
           7120}, partial (16%)
          Length = 830

 Score = 30.8 bits (68), Expect = 0.21
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 90  EETQDLQTMINQCGYRNKMDIDNLMNYP 117
           +E++ +QT  N CGYRN++ ++    YP
Sbjct: 195 KESEHVQTFWN*CGYRNRVKLNQQQRYP 112


>TC91582 similar to GP|6041858|gb|AAF02167.1| unknown protein {Arabidopsis
           thaliana}, partial (61%)
          Length = 509

 Score = 26.6 bits (57), Expect = 3.9
 Identities = 12/32 (37%), Positives = 17/32 (52%)
 Frame = +1

Query: 60  RKETIANCFRHCKIRSASDVVGNLDESTFDEE 91
           R E I  C  HC+I  A + +  L   ++DEE
Sbjct: 88  RLEDIDACSAHCEINIAQEWLDKLPARSYDEE 183


>TC87179 similar to PIR|T45627|T45627 replication factor A-like protein -
            Arabidopsis thaliana, partial (84%)
          Length = 2245

 Score = 26.2 bits (56), Expect = 5.1
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
 Frame = +2

Query: 55   WTIDVRKETIANCFRHCKIRSASDVVGNLDESTFDEE--------TQDLQTMINQCGYRN 106
            W    +K      FR+  +   SD  G    STF+EE         ++L  + +Q G  N
Sbjct: 1700 WCESCQKNDAECNFRYIMVAKVSDASGEAFVSTFNEEAEKIIGCPAEELDNLKSQDGEEN 1879

Query: 107  KMDI 110
              D+
Sbjct: 1880 PYDM 1891


>AW257403 weakly similar to GP|12039277|gb| hypothetical protein {Oryza
           sativa}, partial (29%)
          Length = 555

 Score = 25.4 bits (54), Expect = 8.7
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 100 NQCGYRNKMDIDNLMNYPGENEACSEVQSLEDIVC-TIIENNAEDD 144
           N CG  +   +D + N+ G N A +   SLE   C  +   + EDD
Sbjct: 35  NACGLISCDKLDRVANWVGTNVASAFFASLERCSCINLTTTDIEDD 172


>TC90046 similar to GP|19310699|gb|AAL85080.1 putative mitochondrial carrier
           protein {Arabidopsis thaliana}, partial (90%)
          Length = 1357

 Score = 25.4 bits (54), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 53  PTWTIDVRKETIANCFRHCK 72
           P W + VR   IA CF+H +
Sbjct: 338 PCWCLTVRSSWIA*CFKHSR 397


>TC87794 similar to GP|13775107|gb|AAK39130.1 bZIP transcription factor 2
           {Phaseolus vulgaris}, partial (50%)
          Length = 1264

 Score = 25.4 bits (54), Expect = 8.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 57  IDVRKETIANCFRHCKIRSAS 77
           +D+R +++ +CFR C++ S S
Sbjct: 438 LDLRADSLLDCFRLCRLSSLS 376


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,238,211
Number of Sequences: 36976
Number of extensions: 46666
Number of successful extensions: 220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of query: 147
length of database: 9,014,727
effective HSP length: 87
effective length of query: 60
effective length of database: 5,797,815
effective search space: 347868900
effective search space used: 347868900
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)