BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146790.3 + phase: 0 /pseudo
(1363 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo... 301 1e-81
BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li... 213 4e-55
BG647708 weakly similar to GP|13786450|gb| putative reverse tran... 169 5e-42
BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - ... 96 6e-38
BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At... 103 8e-35
BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari... 143 4e-34
TC83226 weakly similar to PIR|G86419|G86419 probable reverse tra... 127 3e-29
BF631765 118 2e-26
BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At... 114 2e-25
BG646730 102 1e-21
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp... 95 2e-19
TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR re... 91 2e-18
BG586862 91 4e-18
BQ148771 84 4e-16
TC93101 82 1e-15
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ... 81 2e-15
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non... 51 2e-14
BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-li... 51 4e-14
BG585499 69 2e-11
AJ497561 weakly similar to GP|10140689|gb putative non-LTR retro... 56 2e-11
>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
Arabidopsis thaliana, partial (7%)
Length = 687
Score = 301 bits (771), Expect = 1e-81
Identities = 139/225 (61%), Positives = 176/225 (77%)
Frame = +2
Query: 355 WLKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPT 414
WLK+GDKN+KFFH+KA QR K+N IKK+KD+ G W G + VE++L+ YF LFTSSNPT
Sbjct: 5 WLKDGDKNTKFFHSKASQRRKVNEIKKLKDETGNWCKGEENVERLLITYFNNLFTSSNPT 184
Query: 415 TVDQTCLVVKDRLSPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIV 474
+++TC VVK +LS EH+ WC + F+ E+ +AI+QMHP+KAPGPDGLPALFFQKYW+IV
Sbjct: 185 AIEETCEVVKGKLSHEHIVWCEKEFTEEEVLEAINQMHPVKAPGPDGLPALFFQKYWHIV 364
Query: 475 GSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIAN 534
G EV + L +LN TE +NKTFI LIPK KNP++P +RPISLCNVVMKI+TK IAN
Sbjct: 365 GKEVQQMVLQVLNNSMETEELNKTFIVLIPKGKNPNTPKDYRPISLCNVVMKIITKVIAN 544
Query: 535 RLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKGKK 579
R+K LP+++D EQSAFVQGRLITDNA+IA + + KGK+
Sbjct: 545 RVKQTLPDVIDVEQSAFVQGRLITDNALIAWSVSIG*RXRRKGKR 679
>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
{Arabidopsis thaliana}, partial (18%)
Length = 789
Score = 213 bits (542), Expect = 4e-55
Identities = 103/251 (41%), Positives = 157/251 (62%)
Frame = -3
Query: 513 NQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMK 572
+++R I+ CN KI+ K ++ R++P+L I+ QSAFV GR I+DN +I + H+++
Sbjct: 775 SEYRTIAPCNTQYKIIAKILSKRMQPLLRSIISPSQSAFVPGRAISDNVLITHKILHYLR 596
Query: 573 KKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIINTILQCISTVSYQILING 632
+ K MA+K DM KAYDRI W+F++ +L + F I+ I++C+STVSY LING
Sbjct: 595 QSGAKKHVSMAVKTDMTKAYDRIAWNFLREVLTRLGFHGIWISWIMECVSTVSYSFLING 416
Query: 633 QPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLF 692
P R P RGLRQGDPLSPYLFILC VLSGL ++ + + G+++ARN P I HLLF
Sbjct: 415 GPQGRVLPSRGLRQGDPLSPYLFILCTEVLSGLCQQALRKGTLPGVKVARNCPPINHLLF 236
Query: 693 ADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINI 752
ADD + F +++ ++S+++ Y+ ASG+ +N KS +++S + + + I
Sbjct: 235 ADDTMFFGKSNASSCAILLSIMDKYRAASGRCIN*TKSAITFSSKTSQAIIDRVKGELKI 56
Query: 753 KTVNTHSRYLG 763
+YLG
Sbjct: 55 AKEGGTGKYLG 23
>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
{Oryza sativa}, partial (9%)
Length = 708
Score = 169 bits (429), Expect = 5e-42
Identities = 83/120 (69%), Positives = 101/120 (84%)
Frame = +1
Query: 640 PERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLLF 699
PE+GLRQGDPLSPYLFILCANVLSGLLK+E +HGI++AR+ PKITHLLFADD LLF
Sbjct: 4 PEKGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQVARSDPKITHLLFADDSLLF 183
Query: 700 ARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTHS 759
ARA++ EA I+ VL++YQ ASGQ+VN +KSEVSYS+NV N +KE+ICQ+I IKT + S
Sbjct: 184 ARANLTEAATIMQVLHSYQSASGQLVNFEKSEVSYSQNVPNQEKEMICQQIAIKTGSPQS 363
Score = 94.7 bits (234), Expect(2) = 2e-24
Identities = 45/101 (44%), Positives = 63/101 (61%)
Frame = +3
Query: 946 FKDNWIPGTRCTPIQRTEGTVDEDAVVADLIVHETRSWDRERIMASFNSFIAKKILSIPI 1005
+KD WIP R + G++ D +LI ++T+ W+R+ I SFN++ A +I+ IP+
Sbjct: 339 YKD-WIPSKREFKLNHVSGSLSVD----ELIDYDTKQWNRDLIFHSFNNYAAHQIIKIPL 503
Query: 1006 SFRLPDDKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSS 1046
S R P+DK+ W WEK G YSVRS HH LC+ AESSS
Sbjct: 504 SMRQPEDKIIWHWEKDGIYSVRSAHHALCDENFSNQAESSS 626
Score = 37.4 bits (85), Expect(2) = 2e-24
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +2
Query: 1052 IWKQIWNFNGPRSAQNFLWRL 1072
IWK IWN RS QNFLWRL
Sbjct: 641 IWKAIWNTPASRSVQNFLWRL 703
>BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - Arabidopsis
thaliana, partial (17%)
Length = 677
Score = 96.3 bits (238), Expect(2) = 6e-38
Identities = 54/136 (39%), Positives = 71/136 (51%)
Frame = +2
Query: 332 LEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWN 391
L+ K E + EE W+Q+SR W GD N KF+HA KQR N I + D G W
Sbjct: 8 LKEKLQEAYKDEEDYWQQKSRNMWHISGDLNKKFYHALTKQRHARNRIVGLYDYDGNWIT 187
Query: 392 GRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRLSPEHVEWCNRSFSPAEIKDAIDQM 451
VEKV VDYF LF + PT D + ++P+ + R + E++ A+ M
Sbjct: 188 EEQGVEKVAVDYFEDLFQRTTPTGFDGFLDEITSSITPQMNQRLLRLATEEEVRLALFIM 367
Query: 452 HPLKAPGPDGLPALFF 467
HP KAPGPDG+ L F
Sbjct: 368 HPEKAPGPDGMTTLLF 415
Score = 81.3 bits (199), Expect(2) = 6e-38
Identities = 40/89 (44%), Positives = 54/89 (59%)
Frame = +3
Query: 466 FFQKYWYIVGSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVM 525
FFQ W+I+ +++ + L GK +N T I LIPK K P+ + RPISLCNV
Sbjct: 411 FFQHSWHIIKMDLLKMVNSFLASGKLDTRLNTTNICLIPKKKRPTRMTELRPISLCNVGY 590
Query: 526 KIVTKTIANRLKPILPEIMDEEQSAFVQG 554
KI++K + RLK LP ++ E QSAFV G
Sbjct: 591 KIISKVLCQRLKVCLPSLISETQSAFVHG 677
>BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (16%)
Length = 794
Score = 103 bits (257), Expect(2) = 8e-35
Identities = 60/183 (32%), Positives = 92/183 (49%), Gaps = 3/183 (1%)
Frame = +3
Query: 321 GSPDNITKFRELEAKHSELLQ---TEETMWRQRSRATWLKEGDKNSKFFHAKAKQRGKIN 377
G+ K EL SEL + EE W Q+SR WL+ GD+N+KFFHA K R N
Sbjct: 48 GNTKLFNKGEELSLLRSELNEEYHNEEIFWMQKSRLNWLRSGDRNTKFFHAVTKNRRAQN 227
Query: 378 SIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRLSPEHVEWCNR 437
I + DD W + + ++ +F L++S + + + ++ E
Sbjct: 228 RILSLIDDDDKEWFVEEDLGRLADSHFKLLYSSEDVGITLEDWNSIPAIVTEEQNAQLMA 407
Query: 438 SFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILNEGKSTECINK 497
S E+++A+ ++P K PGPDG+ FFQ++W +G ++ S+A L GK E INK
Sbjct: 408 QISREEVREAVFDINPHKCPGPDGMNVFFFQQFWDTMGDDLTSMAQEFLRTGKLEEGINK 587
Query: 498 TFI 500
T I
Sbjct: 588 TNI 596
Score = 63.5 bits (153), Expect(2) = 8e-35
Identities = 32/63 (50%), Positives = 44/63 (69%)
Frame = +1
Query: 502 LIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLITDNA 561
L+PK +FRPISLCNV KIV+K ++ RLK +LP I+ E Q+AF + +LI+DN
Sbjct: 601 LVPKKLEAKRLVEFRPISLCNVAYKIVSKVLSKRLKSVLPWIITETQAAFGRRQLISDNI 780
Query: 562 IIA 564
+IA
Sbjct: 781 LIA 789
>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
(69%)
Length = 616
Score = 143 bits (361), Expect = 4e-34
Identities = 72/197 (36%), Positives = 115/197 (57%), Gaps = 3/197 (1%)
Frame = +3
Query: 439 FSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILNEGKSTECINKT 498
F+ E+K+A+ M KAPG DG FF+ W I+G V+ L G + IN T
Sbjct: 24 FTAVEVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCT 203
Query: 499 FIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLIT 558
++ L+PK N +S FRPI+ C+V+ KI++K + +R++ +L ++ E QSAFV+GR+I
Sbjct: 204 YVTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIF 383
Query: 559 DNAIIAMECFHWMKKKTKGKKGV---MAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIIN 615
DN I++ E K+ +KG+ +K+D+ KAYD EW F+K ++ + FP +N
Sbjct: 384 DNIILSHELV-----KSYSRKGISPRCMVKIDLXKAYDSXEWPFIKHLMLELGFPYKFVN 548
Query: 616 TILQCISTVSYQILING 632
++ ++T SY NG
Sbjct: 549 WVMAXLTTASYTFNXNG 599
>TC83226 weakly similar to PIR|G86419|G86419 probable reverse transcriptase
100033-105622 [imported] - Arabidopsis thaliana, partial
(2%)
Length = 885
Score = 127 bits (319), Expect = 3e-29
Identities = 86/290 (29%), Positives = 143/290 (48%), Gaps = 15/290 (5%)
Frame = +3
Query: 1016 WQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSD-IWKQIWNFNGPRSAQNFLWRLAS 1074
W +G YSV+SG++ L +++++ +S+ IWK+IW+ + + LWR+ +
Sbjct: 6 WMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSDETLIWKKIWSLHTIPRHKVLLWRILN 185
Query: 1075 NILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGI---HIPPNS 1131
+ LP R +L K+GI CP C+S E + HLF+ CP +K VWF S L I ++P +
Sbjct: 186 DSLPVRSSLRKRGIQCYPLCPRCHSKTETITHLFMSCPLSKRVWFGSNLCINFDNLPNPN 365
Query: 1132 MCREWMELWLKKDDPLAVQVFGITLWRLWQGRNQLIFKNSPFDPALIAQSAVLLVEEFNL 1191
E L KD+ + + + I ++ LW RN + ++ I Q A + ++
Sbjct: 366 FIN*LYEAIL*KDECITI*IAAI-IYNLWHARNLSVLEDQTILEMDIIQRASNCISDYKQ 542
Query: 1192 ANRKA-------ACHPISR----APTRWCPPQTGTVKINVDAGVFTDGSTGWGFVARDHH 1240
AN +A P S+ T+W P G VK+N DA + G G G + RD
Sbjct: 543 ANTQAPPSMARTGYDPRSQHRPAKNTKWKRPNLGLVKVNTDANLQNHGKWGLGIIIRDEV 722
Query: 1241 GAVLFSATRKEEMMVTPLVAERLALRWCLSWAEGEQFTSLCIETDAEQVV 1290
G V+ ++T + + L AE AL + +A+ F + E D E+++
Sbjct: 723 GLVMAASTWETDGNDRALEAEAYALLTGMRFAKDCGFXKVXFEGDNEKLM 872
>BF631765
Length = 498
Score = 118 bits (295), Expect = 2e-26
Identities = 63/146 (43%), Positives = 87/146 (59%)
Frame = +1
Query: 1121 SPLGIHIPPNSMCREWMELWLKKDDPLAVQVFGITLWRLWQGRNQLIFKNSPFDPALIAQ 1180
SPLGIH+P WME L + Q+FG +LW +W+ RNQ +F N FDP L++
Sbjct: 25 SPLGIHVPVQLDLLSWMEKCLAVPEQRVKQLFGTSLWLIWKHRNQKVFNNVDFDPPLVSA 204
Query: 1181 SAVLLVEEFNLANRKAACHPISRAPTRWCPPQTGTVKINVDAGVFTDGSTGWGFVARDHH 1240
LVEEF++AN + P R PP G++K+NV AG F DGSTGWGF+AR+
Sbjct: 205 ----LVEEFSIANLPLKRGQVCVVP-R*QPPPFGSIKVNVGAGCFGDGSTGWGFIARNAA 369
Query: 1241 GAVLFSATRKEEMMVTPLVAERLALR 1266
G L + T+ + + +PL+AE L L+
Sbjct: 370 GLALSAETKSDGISYSPLLAECLLLK 447
>BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (10%)
Length = 767
Score = 114 bits (286), Expect = 2e-25
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 14/233 (6%)
Frame = -3
Query: 911 VGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWIPGTRCT---PIQRTEGTVD 967
+G YAWRS+ A+ L++ A +IGNG I++ C P + +
Sbjct: 750 LGSWASYAWRSIHSAQHLIKQGAKVIIGNGENTNIWEREMAWKLTCVTNHPNKHSSRAY* 571
Query: 968 EDAVVADLIVHETRSWDRERIMASFNSFIA----KKILSIPISFRLPDDKVTWQWEKSGE 1023
+ RER NS +KILSI + +D +W++ KSG
Sbjct: 570 APTLYGYEGCRSDDPMRRERNANLINSIFPEGTRRKILSIHPQGPIGEDSYSWEYSKSGH 391
Query: 1024 YSVRSGHHLLCENKSKEVAESSSVRGS-------DIWKQIWNFNGPRSAQNFLWRLASNI 1076
YSV+SG+++ + +++ RG+ D+++++W +N ++FLWR SN
Sbjct: 390 YSVKSGYYV-----QTNIIAAANQRGTVDQPSLDDLYQRVWKYNTSPKVRHFLWRCISNS 226
Query: 1077 LPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIHIPP 1129
LPT N+ + IS D SC C E +NH+ CP A+ +W +SP IH PP
Sbjct: 225 LPTAANMRSRHISKDGSCSRCGMESETVNHILFQCPYARLIWATSP--IHAPP 73
>BG646730
Length = 799
Score = 102 bits (253), Expect = 1e-21
Identities = 51/138 (36%), Positives = 83/138 (59%), Gaps = 2/138 (1%)
Frame = +1
Query: 910 KVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWIPGTRCTPIQRTEGTVDED 969
++G QP YAWRS+ +++++ + W I NG+ VRI+KD+W+P + +E
Sbjct: 382 EIGNQPSYAWRSMFNIKDVIDLGSRWSISNGQNVRIWKDDWLPNQTGFKVCSPMVDFEEA 561
Query: 970 AVVADLIVHETRSWDRERIMASFNSFIAKKILSIPISFRLPDDKVTWQWEKSGEYSVRSG 1029
+++LI T+S R+ + F++F AK+IL+IP+S+RL D+ WE+ YSVRS
Sbjct: 562 TCISELIDTNTKSSKRDLVRNVFSAFEAKQILNIPLSWRLWPDRRILYWERDRNYSVRSA 741
Query: 1030 HHLL--CENKSKEVAESS 1045
HHL+ S EV+ S+
Sbjct: 742 HHLIKVATKDSPEVSSSN 795
>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
Arabidopsis thaliana, partial (6%)
Length = 951
Score = 95.1 bits (235), Expect = 2e-19
Identities = 85/331 (25%), Positives = 147/331 (43%), Gaps = 4/331 (1%)
Frame = +2
Query: 495 INKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQG 554
IN TFIALIPK NP N FRPISL + KI+ K +ANRL+ ++ ++ + QSAFV+
Sbjct: 50 INSTFIALIPKVDNPQRLNDFRPISLVGSLYKILGKLLANRLRVVIGSVISDAQSAFVKN 229
Query: 555 RLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSML-QSMNFPENI 613
R I + + + WM+ + K + + K + + + M+F
Sbjct: 230 RQILE-MVFL*QMRLWMRLRN*RK--IFCCLRWILKRLITLSIGLIWILF*VGMSFLVLW 400
Query: 614 INTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDN 673
I +C+ST + +L+NG P+ + L Q + Y F G++
Sbjct: 401 RKWIKECVSTATTSVLVNGSPTNVLM--KSLVQTQLFTRYSF--------GVV------- 529
Query: 674 KIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSE-- 731
N ++HL FA+D LL + + + + L + SG VN KS
Sbjct: 530 ---------NPVVVSHLQFANDTLLLETKNWANIRALRAALVIF*AMSGLKVNFHKSGLV 682
Query: 732 -VSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKIKGW 790
V+ + + L+ ++ ++ YLG+P+ + + + R+ ++ GW
Sbjct: 683 CVNIAPSWLSEAASVLSWKVG----KVPFLYLGMPIEGNSRRLSFWEPIVNRIKARLTGW 850
Query: 791 KEKCLSRAGKETLIKAVAQAIPNYIMSCYKL 821
+ LS G+ L+K+V ++ Y + KL
Sbjct: 851 NSRFLSFGGRLVLLKSVLTSLSVYALPSSKL 943
>TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (1%)
Length = 798
Score = 91.3 bits (225), Expect = 2e-18
Identities = 68/263 (25%), Positives = 115/263 (42%), Gaps = 13/263 (4%)
Frame = -1
Query: 122 KKKTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDL 181
+++ W + ++ + W C GDFN IL + E G + + L + + + NL L
Sbjct: 795 RRQLWSAISNIQTQHKLSWCCIGDFNTILGSHEHQGSHTPARLPMLDFQQWSDVNNLFHL 616
Query: 182 GFNGYPFTWSNGRHGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIELDV 241
G FTW+NGR G RLDR + I + L + SDH I E
Sbjct: 615 PTRGSAFTWTNGRRGRNNTRKRLDRSIVNQLMIDNCESLSACTLTKLRSDHFPILFE--- 445
Query: 242 CLEDAHKKKLHVFRFEKCWADDDRCEAMVRGSW-NNATG-----LASKIEAMQSLDSKFK 295
L+ + + F+F K W+ C +++ W N G L K++ ++ + +
Sbjct: 444 -LQTQNIQFSSSFKFMKMWSAHPDCINIIKQCWANQVVGCPMFVLNQKLKNLKEVLKVWN 268
Query: 296 EYITSEIR-------KELLEIETQLNNHASWDGSPDNITKFRELEAKHSELLQTEETMWR 348
+ + KEL +I+ ++++ D D K +L + + L EE W
Sbjct: 267 KNTFGNVHSQVDNAYKELDDIQVKIDSIGYSDVLMDQ-EKAAQLNLESA--LNIEEVFWH 97
Query: 349 QRSRATWLKEGDKNSKFFHAKAK 371
++S+ W EGD+N+ FFH AK
Sbjct: 96 EKSKVNWHCEGDRNTAFFHRVAK 28
>BG586862
Length = 804
Score = 90.5 bits (223), Expect = 4e-18
Identities = 46/157 (29%), Positives = 77/157 (48%), Gaps = 2/157 (1%)
Frame = -1
Query: 1052 IWKQIWNFNGPRSAQNFLWRLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHC 1111
I +++W ++FLWRL N LP + L K+GI CP C S +E + HLFL+C
Sbjct: 666 IREKVWGIKTIPRHKSFLWRLLHNALPVKDELHKRGIRCSLLCPRCESKIETVQHLFLNC 487
Query: 1112 PAAKAVWFSSPLGIHIPPNSMC--REWMELWLKKDDPLAVQVFGITLWRLWQGRNQLIFK 1169
+ WF S LGI+ + + +W+ ++ K+D + L+ +W RNQ +F+
Sbjct: 486 EVTQKEWFGSQLGINFHSSGVLHFHDWITNFILKNDEETIIALTALLYSIWHARNQKVFE 307
Query: 1170 NSPFDPALIAQSAVLLVEEFNLANRKAACHPISRAPT 1206
N ++ Q A + F +A + P + P+
Sbjct: 306 NIDVPGDVVIQRASSSLHSFKMAQVSDSVLPSNAIPS 196
>BQ148771
Length = 680
Score = 84.0 bits (206), Expect = 4e-16
Identities = 51/173 (29%), Positives = 89/173 (50%), Gaps = 8/173 (4%)
Frame = -3
Query: 771 SKKEVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVE 830
+KK FS V +V + WK LS A + TL K+V +A+P Y M +P+ C + ++
Sbjct: 618 TKKSRFS-VYYQVHVMLANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACIEEIQ 442
Query: 831 GMLAKFWWASDEYKRKIHWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNS 890
+ KF W E R+ H + W + + K GLG R NKA + K W + + +NS
Sbjct: 441 KLQRKFVWGDTEVSRRYHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSGSNS 262
Query: 891 LMSSILKSRYFPRTSISITKVGFQ---PRYAWRSLMK-----ARELVENDAHW 935
L + +++ +Y + S S+ ++ + W++L+K R LV+++ +W
Sbjct: 261 LCTEVMRGKY--QRSESLEEIFLEKPTDSSLWKALVKLWPEIERNLVDSNGNW 109
>TC93101
Length = 675
Score = 82.0 bits (201), Expect = 1e-15
Identities = 53/192 (27%), Positives = 85/192 (43%), Gaps = 20/192 (10%)
Frame = -1
Query: 1077 LPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIHIPPNSMCR-- 1134
LP R L+K+G++ CP C LE NH+F+ C + VWF S L I P NS
Sbjct: 663 LPVRXELNKRGVNCPPLCPRCYFNLETTNHIFMSCERTQRVWFGSQLSIRFPDNSTINFS 484
Query: 1135 EWM-ELWLKKDDPLAVQVFGITLWRLWQGRNQLIFKNSPFDPALI---AQSAVLLVEE-- 1188
+W+ + + + + +++ IT + +W RN+ IF+N I AQ+++L E+
Sbjct: 483 DWLFDAISNQTEEIIIKISAIT-YSIWHARNKAIFENQFVSEDTIIQ*AQNSILAYEQAT 307
Query: 1189 ------------FNLANRKAACHPISRAPTRWCPPQTGTVKINVDAGVFTDGSTGWGFVA 1236
+ + S +RW P +K N DA + G G G +
Sbjct: 306 IKPQNPNIVLSSLSATSNTNTTRRRSNVRSRWQKPLNNILKANCDANLQVQGRWGLGCII 127
Query: 1237 RDHHGAVLFSAT 1248
R+ G +AT
Sbjct: 126 RNADGEAKVTAT 91
>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
partial (1%)
Length = 441
Score = 81.3 bits (199), Expect = 2e-15
Identities = 45/125 (36%), Positives = 69/125 (55%)
Frame = +3
Query: 641 ERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLLFA 700
+RGL+QGDPL+P+LF+L A +SGL+K N G + R +++HL +ADD L
Sbjct: 21 QRGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRGGTRVSHLQYADDTLCIG 200
Query: 701 RASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTHSR 760
+V+ + ++L ++ ASG VN KS + NV E C+ +N + +
Sbjct: 201 MPTVDNLWTLKALLQGFEMASGLKVNFHKSSL-IGINVPRDFMEAACRFLNCREESIPFI 377
Query: 761 YLGLP 765
YLGLP
Sbjct: 378 YLGLP 392
>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
retroelement reverse transcriptase {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 1262
Score = 50.8 bits (120), Expect(4) = 2e-14
Identities = 35/143 (24%), Positives = 62/143 (42%), Gaps = 5/143 (3%)
Frame = +2
Query: 981 RSWDRERIMASFNSFIAKKILSIPISFRLPD---DKVTWQWEKSGEYSVRSGHHLLCENK 1037
R+W+ R + + ++ + +F L D DK W + YSV+ +
Sbjct: 416 RAWEWTRRLFVWEEECVRECCILLNNFVLQDNVNDKWRWLLDPVNGYSVKVFY------- 574
Query: 1038 SKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWRLASNILPTRCNLSKKGISL--DQSCP 1095
+ + + + + +W+ + P F+WRL N LPT+ NL +G+ L + +C
Sbjct: 575 -RYITSTGHISDRSLVDDVWHKHIPSKVSLFVWRLLRNRLPTKDNLVHRGVLLATNAACV 751
Query: 1096 LCNSGLEDLNHLFLHCPAAKAVW 1118
E HLFLHC ++W
Sbjct: 752 CGCVDSESTTHLFLHCNVFCSLW 820
Score = 36.2 bits (82), Expect(4) = 2e-14
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +1
Query: 872 FNKALLGKQYWRLLADNNSLMSSILKSRY 900
FN +LLGK WRLL D L +LK+RY
Sbjct: 49 FNLSLLGKWCWRLLVDKEGLWHRVLKARY 135
Score = 25.4 bits (54), Expect(4) = 2e-14
Identities = 14/47 (29%), Positives = 21/47 (43%), Gaps = 8/47 (17%)
Frame = +3
Query: 912 GFQPRYAWRSLMKARELV--------ENDAHWVIGNGRTVRIFKDNW 950
G Q W+++ K RE V E + V+G+GR + D W
Sbjct: 165 GRQSSMWWKTICKVREGVGEGVGNWFEENIRMVVGDGRDAFFWYDTW 305
Score = 24.3 bits (51), Expect(4) = 2e-14
Identities = 7/28 (25%), Positives = 16/28 (57%)
Frame = +1
Query: 1151 VFGITLWRLWQGRNQLIFKNSPFDPALI 1178
+ + W +W+ RN +F+N+ P ++
Sbjct: 928 ILQVNFWVIWKERNNRLFQNTVTAPFVL 1011
>BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
{Arabidopsis thaliana}, partial (7%)
Length = 774
Score = 50.8 bits (120), Expect(2) = 4e-14
Identities = 27/89 (30%), Positives = 48/89 (53%)
Frame = +2
Query: 7 LSWNCRGLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGLFVPCDG 66
+ WNC+G+G+ +R L +P ++FLMET+ K +++ ++ F++ VP G
Sbjct: 212 MCWNCQGIGSDLTVRRLREFQTKDSPDIMFLMETKRKDEDVYKMYRGTEFTNHFTVPPVG 391
Query: 67 FGKERACDIALLWMDSVNLSIRSYSLNHI 95
+ +AL W D+V + I + S N I
Sbjct: 392 L----SGGLALSWKDNVQVEILASSANVI 466
Score = 46.6 bits (109), Expect(2) = 4e-14
Identities = 20/47 (42%), Positives = 26/47 (54%)
Frame = +3
Query: 115 GYPDETNKKKTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAGGNIR 161
G P ++ K WD L ++ + WL GDFND+L N EK GG R
Sbjct: 519 GVPQPEHRAKFWDELSTIGAQRDGAWLLTGDFNDLLDNSEKVGGPAR 659
>BG585499
Length = 792
Score = 68.6 bits (166), Expect = 2e-11
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 17/152 (11%)
Frame = +3
Query: 1053 WKQIWNFNGPRSAQNFLWRLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCP 1112
WK +W + GP Q F+W +A + T S+ G + +CP C + E + H+ C
Sbjct: 225 WKMLWGWRGPHRTQTFMWLVAHGCILTNYRRSRWGTRVLATCPCCGNADETVLHVLCDCR 404
Query: 1113 AAKAVWFSSPLGIHIPPNSM---------CREWMELWLKKDDPLAVQ-----VFGITLWR 1158
A VW I + P+ CR+W+ L K + F T W
Sbjct: 405 PASQVW------IRLVPSDWITNFFSFDDCRDWVFKNLSKRSNGVSKFKWQPTFMTTCWH 566
Query: 1159 LWQGRNQLIFKNS---PFDPALIAQSAVLLVE 1187
+W RN+ IF+ P +P + Q+ ++ +E
Sbjct: 567 MWTWRNKAIFEEGFQRPDNPTYVIQNFIMAIE 662
>AJ497561 weakly similar to GP|10140689|gb putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 621
Score = 56.2 bits (134), Expect(2) = 2e-11
Identities = 23/64 (35%), Positives = 37/64 (56%)
Frame = +2
Query: 888 NNSLMSSILKSRYFPRTSISITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFK 947
+ SL+S ILK +YFP+ S +G P + WRSL+ + L+ W+IG+G + +
Sbjct: 404 STSLLSKILKFKYFPQWDFSYANLGHNPSFTWRSLLSTQSLLTLGHRWMIGDGSQINVSS 583
Query: 948 DNWI 951
+WI
Sbjct: 584 MSWI 595
Score = 32.0 bits (71), Expect(2) = 2e-11
Identities = 15/35 (42%), Positives = 23/35 (64%)
Frame = +3
Query: 852 WGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLA 886
+ L K GGLG ++ +FN ++LGKQ W+LL+
Sbjct: 303 FNNLARHKSVGGLGLQN-QEFNISMLGKQRWKLLS 404
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,254,238
Number of Sequences: 36976
Number of extensions: 769754
Number of successful extensions: 3659
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 3571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3630
length of query: 1363
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1255
effective length of database: 5,021,319
effective search space: 6301755345
effective search space used: 6301755345
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC146790.3