BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146760.13 + phase: 0 /pseudo/partial
(612 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89152 similar to PIR|H84854|H84854 probable ATP-dependent RNA ... 565 0.0
TC80853 similar to GP|17064740|gb|AAL32524.1 ATP-dependent RNA h... 644 0.0
TC90280 similar to PIR|H84854|H84854 probable ATP-dependent RNA ... 324 e-103
TC82878 similar to PIR|T45677|T45677 ATP-dependent RNA helicase-... 342 3e-94
TC77771 homologue to GP|6137207|gb|AAF04377.1| P72 DEAD box prot... 320 1e-87
TC79034 similar to GP|10177293|dbj|BAB10554. ATP-dependent RNA h... 187 9e-83
TC78248 similar to GP|16323192|gb|AAL15330.1 At2g47330/T8I13.17 ... 196 8e-76
TC76342 similar to PIR|A86444|A86444 probable RNA helicase [impo... 274 8e-74
TC78036 homologue to PIR|T06824|T06824 translation initiation fa... 209 2e-54
TC77435 similar to GP|7211427|gb|AAF40306.1| RNA helicase {Vigna... 205 4e-53
TC76575 homologue to SP|Q40465|IF4V_TOBAC Eukaryotic initiation ... 198 4e-51
TC79189 similar to GP|21593647|gb|AAM65614.1 replication protein... 110 5e-51
TC76958 homologue to SP|P41382|IF4U_TOBAC Eukaryotic initiation ... 198 6e-51
TC92952 homologue to GP|14209595|dbj|BAB56090. putative ethylene... 197 8e-51
TC77964 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_9... 179 2e-45
BQ752049 similar to GP|173419|gb|A p68 RNA helicase {Schizosacch... 176 3e-44
TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA heli... 169 2e-42
BG452245 similar to PIR|H86341|H8 hypothetical protein AAD30599.... 167 1e-41
TC89900 similar to GP|9759355|dbj|BAB10010.1 RNA helicase-like p... 162 5e-40
CB065370 similar to PIR|F83151|F83 probable ATP-dependent RNA he... 160 1e-39
>TC89152 similar to PIR|H84854|H84854 probable ATP-dependent RNA helicase
[imported] - Arabidopsis thaliana, partial (72%)
Length = 1787
Score = 565 bits (1456), Expect(4) = 0.0
Identities = 290/326 (88%), Positives = 303/326 (91%)
Frame = +3
Query: 165 VKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCP 224
VKPTPVQR+AIPISL GRDLMACAQTGSGKTAAFCFPIISGI+T Q AQRP R RT P
Sbjct: 234 VKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILTEQYAQRP-RVARTAYP 410
Query: 225 LALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRL 284
LAL+LSPTRELS QIH+EA+KFSYQTGV+VVVAYGGAPI QQLRELERGVDILVATPGRL
Sbjct: 411 LALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRL 590
Query: 285 VDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPK 344
VDLLERARVSL MIRYLALDEADRMLDMGFEPQIRKIVEQMDMPP G+RQT+LFSATFPK
Sbjct: 591 VDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPK 770
Query: 345 EIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQ 404
EIQRLASDFL++YIFLAVGRVGSSTDLI QRVEYV ESDKRSHLMDLLHAQR N V GKQ
Sbjct: 771 EIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQ 950
Query: 405 ALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVA 464
LTLVFVETKKGADALEH LC+N FPAT IHGDR+QQERE ALRSFK+GNTPILVATDVA
Sbjct: 951 GLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVA 1130
Query: 465 ARGLDIPHVAHVVNFDLPNDIDDYVH 490
ARGLDIP VAHVVNFDLPNDIDDYVH
Sbjct: 1131ARGLDIPRVAHVVNFDLPNDIDDYVH 1208
Score = 151 bits (381), Expect(4) = 0.0
Identities = 76/121 (62%), Positives = 94/121 (76%)
Frame = +1
Query: 492 IGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRS 551
IGRTGRAGK GLATAFFN++N SMA+ L DLMQEANQEVPAWL+R+AAR+ +GGG+N+R+
Sbjct: 1213 IGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGGRNKRT 1392
Query: 552 GGGRFGGRDFRREGSFSRGGSDYHGAGNSGGGYGASGGYGGGGYGGGYAGNSAGPXVTTA 611
GG RFGGRD R+E S+++ G+DY+ G +GGGYG Y GGGYG G VT+A
Sbjct: 1393 GGARFGGRDVRKESSYNK-GNDYY--GGNGGGYGVPASY-GGGYGQG---------VTSA 1533
Query: 612 W 612
W
Sbjct: 1534 W 1536
Score = 88.2 bits (217), Expect(4) = 0.0
Identities = 46/64 (71%), Positives = 50/64 (77%)
Frame = +1
Query: 84 GGYGNRGGGGWDRREANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPV 143
G R GGG RREANPF ++D +EP T EQENTGINFDAY+DIPVETSG NVPPPV
Sbjct: 1 GNGRERVGGGGGRREANPF--ENDVDEPFT--EQENTGINFDAYDDIPVETSGENVPPPV 168
Query: 144 NTFA 147
NTFA
Sbjct: 169 NTFA 180
Score = 37.0 bits (84), Expect(4) = 0.0
Identities = 15/17 (88%), Positives = 17/17 (99%)
Frame = +2
Query: 148 EIDLGEALNQNIRRCKY 164
EIDLG+ALNQNI+RCKY
Sbjct: 182 EIDLGDALNQNIKRCKY 232
Score = 29.6 bits (65), Expect = 3.5
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Frame = +1
Query: 72 NDYRGG-GGGRG-----GGGYGNRGGGGWDRREANPFAD 104
NDY GG GGG G GGGYG WD A D
Sbjct: 1450 NDYYGGNGGGYGVPASYGGGYGQGVTSAWD*ISATSLID 1566
>TC80853 similar to GP|17064740|gb|AAL32524.1 ATP-dependent RNA
helicase-like protein {Arabidopsis thaliana}, partial
(71%)
Length = 1065
Score = 644 bits (1662), Expect = 0.0
Identities = 319/321 (99%), Positives = 320/321 (99%)
Frame = +2
Query: 292 RVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLAS 351
RVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLAS
Sbjct: 2 RVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLAS 181
Query: 352 DFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFV 411
DFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFV
Sbjct: 182 DFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFV 361
Query: 412 ETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIP 471
ETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIP
Sbjct: 362 ETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIP 541
Query: 472 HVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVP 531
HVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVP
Sbjct: 542 HVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVP 721
Query: 532 AWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNSGGGYGASGGYG 591
AWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNSGGGYGASGGYG
Sbjct: 722 AWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNSGGGYGASGGYG 901
Query: 592 GGGYGGGYAGNSAGPXVTTAW 612
GGGYGGGYAGNSAGP VT+AW
Sbjct: 902 GGGYGGGYAGNSAGPGVTSAW 964
Score = 29.6 bits (65), Expect = 3.5
Identities = 16/35 (45%), Positives = 18/35 (50%), Gaps = 5/35 (14%)
Frame = +2
Query: 72 NDYRGGGGGRGG----GGYGNRG-GGGWDRREANP 101
+DY G G GG GGYG G GGG+ A P
Sbjct: 842 SDYHGAGNSGGGYGASGGYGGGGYGGGYAGNSAGP 946
>TC90280 similar to PIR|H84854|H84854 probable ATP-dependent RNA helicase
[imported] - Arabidopsis thaliana, partial (24%)
Length = 605
Score = 324 bits (830), Expect(3) = e-103
Identities = 155/155 (100%), Positives = 155/155 (100%)
Frame = +2
Query: 84 GGYGNRGGGGWDRREANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPV 143
GGYGNRGGGGWDRREANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPV
Sbjct: 80 GGYGNRGGGGWDRREANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPV 259
Query: 144 NTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPII 203
NTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPII
Sbjct: 260 NTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPII 439
Query: 204 SGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQ 238
SGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQ
Sbjct: 440 SGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQ 544
Score = 63.5 bits (153), Expect(3) = e-103
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +1
Query: 58 AFDNSGSRWAPPPRNDYRGGGGGRGG 83
AFDNSGSRWAPPPRNDYRGGGGGRGG
Sbjct: 1 AFDNSGSRWAPPPRNDYRGGGGGRGG 78
Score = 28.9 bits (63), Expect(3) = e-103
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 245 KFSYQTGVRVVVA 257
KFSYQTGVRVVVA
Sbjct: 565 KFSYQTGVRVVVA 603
>TC82878 similar to PIR|T45677|T45677 ATP-dependent RNA helicase-like
protein - Arabidopsis thaliana, partial (33%)
Length = 1185
Score = 342 bits (876), Expect = 3e-94
Identities = 199/365 (54%), Positives = 234/365 (63%), Gaps = 14/365 (3%)
Frame = +2
Query: 1 MRSSWADLAANSAAENAPTPPPSAAAAVANNAANTRPVYVPPHLRNRGPSAPAPAAPAFD 60
M ++W+D S + P + N ++ P+ N P+ +P +
Sbjct: 131 MAAAWSD----STTQKQNRPSQQLYVPQFRSNPNNNNIHPSPYYNNNRTHFPSNDSPHY- 295
Query: 61 NSGSRWAPPPRNDYRGGGGGRGGGGYGNRGGGGWDRREANP------FADQDDSEEPV-T 113
N+ +R P P RG GGYG R + P + D + P T
Sbjct: 296 NTFNRPTPRPT---------RGRGGYGFGHSPAPPRHYSRPEQQQPRYYDPSQNRSPFET 448
Query: 114 QEEQENTGI--NFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQ 171
E+ G+ NF+AYE IPVE +G NVPPPVN FAE +L E L NI RCKYVKPTPVQ
Sbjct: 449 NGEKVENGVVANFEAYESIPVEATGENVPPPVNLFAETELHEDLKNNIERCKYVKPTPVQ 628
Query: 172 RHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRP-PRG----VRTVCPLA 226
R+AIPI++ GRDLMACAQTGSGKTAAFCFPIISGIM + A PRG P A
Sbjct: 629 RYAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGIMKERLASGLLPRGGGVDSDVAFPTA 808
Query: 227 LVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVD 286
L+LSPTRELS QIH EA KF++QTGV++ V YGGAPI QQLR LERGVDILVATPGRLVD
Sbjct: 809 LILSPTRELSCQIHAEACKFAHQTGVKIAVVYGGAPIGQQLRILERGVDILVATPGRLVD 988
Query: 287 LLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEI 346
L+ER RVSL I+YLALDEADRMLDMGFE QIR IV+QM MPP G RQT+LFSATFP I
Sbjct: 989 LIERERVSLKKIKYLALDEADRMLDMGFEHQIRNIVQQMHMPPPGDRQTLLFSATFPDNI 1168
Query: 347 QRLAS 351
Q+LAS
Sbjct: 1169QKLAS 1183
>TC77771 homologue to GP|6137207|gb|AAF04377.1| P72 DEAD box protein {Pisum
sativum}, partial (69%)
Length = 1736
Score = 320 bits (819), Expect = 1e-87
Identities = 203/513 (39%), Positives = 286/513 (55%), Gaps = 9/513 (1%)
Frame = +1
Query: 21 PPSAAAAVANNAANTRPVYVPPHLRNRGPSAPAPAAPAFDNSGSRWAPPPRNDYRGGGGG 80
P S+AA + ++ + V V + RG S P F + R D G GG
Sbjct: 289 PSSSAAPLKTSSVPSSSVQVQQSSQGRGRS------PDFSD---------RYDRNGNGGS 423
Query: 81 RGGGGYGNRGGGGWDRREANPFADQDDSE---EPVTQEEQENTG--INFDAYEDI-PVET 134
GG ++ G N A+ + + + TG ++ DAY +
Sbjct: 424 NEGGSRNHQSSKGDSFSSHNNVANGTPAAGNGSSIKSQVPLETGPALSPDAYRRRHEITV 603
Query: 135 SGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGK 194
+G NVPPPV +FA + + ++ + PTP+Q + PI+L +D++A A+TGSGK
Sbjct: 604 TGDNVPPPVTSFASSGFPSEILREVQNAGFSAPTPIQAQS*PIALQSKDIVAIAKTGSGK 783
Query: 195 TAAFCFPIISGIM-TGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVR 253
T + P + T A+ + P LVLSPTREL+ QI +EA KFS + +
Sbjct: 784 TLGYLLPAFIHLKRTNNNAK--------MGPTVLVLSPTRELATQIQDEAVKFSKTSRIA 939
Query: 254 VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMG 313
YGGAP QL++++RG DI+VATPGRL D+LE R+SL + YL LDEADRMLDMG
Sbjct: 940 CTCLYGGAPKGPQLKDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMG 1119
Query: 314 FEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGS--STDL 371
FEPQIRKIV + PA RQT++F+AT+PKE++R+A+D L N + + +G V +
Sbjct: 1120FEPQIRKIVNGV---PAR-RQTLMFTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKS 1287
Query: 372 IDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPA 431
I Q +E + +K+ L +L +Q QG + ++F TKK D L L F A
Sbjct: 1288ITQHIEVLTYVEKQRRLETILRSQD----QGSK--IIIFCSTKKMCDQLARNL-TRQFGA 1446
Query: 432 TTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 491
IHGD+SQ +R+ L F+SG TP+LVATDVAARGLD+ + VVNFD P ++DYVHR
Sbjct: 1447AAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNFDFPTGVEDYVHR 1626
Query: 492 IGRTGRAGKKGLATAFFNENNTSMARSLQDLMQ 524
IGRTGRAG G+A FF + + A L +++
Sbjct: 1627IGRTGRAGATGIAYTFFGDQDAKHASDLIKILE 1725
>TC79034 similar to GP|10177293|dbj|BAB10554. ATP-dependent RNA
helicase-like protein {Arabidopsis thaliana}, partial
(65%)
Length = 1443
Score = 187 bits (476), Expect(2) = 9e-83
Identities = 110/242 (45%), Positives = 152/242 (62%), Gaps = 1/242 (0%)
Frame = +3
Query: 176 PISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTREL 235
P++L GRDL+ A+TGSGKT ++ P I + PR V+ P+ LVL+PTREL
Sbjct: 6 PMALTGRDLIGIAETGSGKTLSYLLPAIVHVSA------QPRLVQGEGPVVLVLAPTREL 167
Query: 236 SMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSL 295
++QI +EA KF ++ +R YGGAP Q+R+L GV+I++ATPGRL+D+LE +L
Sbjct: 168 AVQIQQEAMKFGSRSNIRCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEAQHTNL 347
Query: 296 SMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLS 355
+ YL LDEADRMLDMGFEPQIRKIV Q+ RQT+ +SAT+PKE++ LA FL
Sbjct: 348 QRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPD----RQTLYWSATWPKEVESLARQFLH 515
Query: 356 NYIFLAVGR-VGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETK 414
N + +G + I+Q VE V + +K + L+ LL + G + L+F ETK
Sbjct: 516 NPYKVVIGSPYLKANQSINQVVEVVTDMEKYNRLIKLL----KEVMDGSR--ILIFTETK 677
Query: 415 KG 416
KG
Sbjct: 678 KG 683
Score = 138 bits (347), Expect(2) = 9e-83
Identities = 79/169 (46%), Positives = 103/169 (60%)
Frame = +1
Query: 414 KKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHV 473
KKG D + L ++ +PA +IHGD++Q ER+ L FKSG +PI+ ATDVAARGLD+ +
Sbjct: 676 KKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDI 855
Query: 474 AHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAW 533
VVN+D P+ ++DYVHRIGRTGRAG KG A +FF N AR L ++Q+A Q V
Sbjct: 856 KCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTSANAKYARDLIKILQDAGQIVSPA 1035
Query: 534 LSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNSGG 582
LS A S G G++ GG R GR G +RG + A GG
Sbjct: 1036LS--ALTRSGGFGQHASRGGFRSRGRG----GYGNRGSTSGSNAIPVGG 1164
Score = 29.3 bits (64), Expect = 4.6
Identities = 17/38 (44%), Positives = 20/38 (51%)
Frame = +1
Query: 53 APAAPAFDNSGSRWAPPPRNDYRGGGGGRGGGGYGNRG 90
+PA A SG ++ RGG RG GGYGNRG
Sbjct: 1027 SPALSALTRSGGFG----QHASRGGFRSRGRGGYGNRG 1128
>TC78248 similar to GP|16323192|gb|AAL15330.1 At2g47330/T8I13.17 {Arabidopsis
thaliana}, partial (79%)
Length = 2745
Score = 196 bits (499), Expect(2) = 8e-76
Identities = 114/264 (43%), Positives = 165/264 (62%), Gaps = 1/264 (0%)
Frame = +2
Query: 159 IRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRG 218
I++ Y KPT +Q A+P+ L GRD++ A+TGSGKTAAF P+I IM QP + G
Sbjct: 941 IKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMD-QPELQKEEG 1117
Query: 219 VRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILV 278
P+ ++ +PTREL+ QI+ EA+KF+ G+RV YGG +Q +EL+ G +I+V
Sbjct: 1118 -----PIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVV 1282
Query: 279 ATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLF 338
ATPGRL+D+L+ +++ YL LDEADRM D+GFEPQ+R IV Q+ RQT+LF
Sbjct: 1283 ATPGRLIDMLKMKALAMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPD----RQTLLF 1450
Query: 339 SATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYV-QESDKRSHLMDLLHAQRA 397
SAT P+++++LA + LS+ I + VG VG + + I Q V+ + +S+K L++ LH
Sbjct: 1451 SATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLHEMID 1630
Query: 398 NGVQGKQALTLVFVETKKGADALE 421
G TLVF K D +E
Sbjct: 1631 QGD------TLVFASKKATVDEIE 1684
Score = 106 bits (264), Expect(2) = 8e-76
Identities = 69/178 (38%), Positives = 86/178 (47%), Gaps = 2/178 (1%)
Frame = +3
Query: 429 FPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 488
F +HGD+ Q R L+ FKSG +L+ATDVAARGLDI + VVNFD+ D+D +
Sbjct: 1707 FKVAALHGDKDQSSRMDILQKFKSGAYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMH 1886
Query: 489 VHRIGRTGRAG-KKGLATAFFNENNTSMARSLQDLMQEANQEVPAWLSRFAARSS-FGGG 546
VHRIGRTGRAG K G+A + A L + + A Q V L A + F
Sbjct: 1887 VHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSTELMDLAMKDGRFRSK 2066
Query: 547 KNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNSGGGYGASGGYGGGGYGGGYAGNSA 604
++ R GGGR G G G GG G G G G G N+A
Sbjct: 2067 RDARKGGGRKG-----------------KGRGGGAGGKGVRGVDFGLGIGYSTDSNNA 2189
>TC76342 similar to PIR|A86444|A86444 probable RNA helicase [imported] -
Arabidopsis thaliana, partial (80%)
Length = 1651
Score = 274 bits (700), Expect = 8e-74
Identities = 174/432 (40%), Positives = 241/432 (55%), Gaps = 7/432 (1%)
Frame = +3
Query: 113 TQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRC--KYVKPTPV 170
++E + G++ A D P+ +G N T + L +N+ C + KP+P+
Sbjct: 264 SEENNDAGGVSVSA-SDEPIVVTGKNAGDEKYTPVKRFEDSGLPENVLECCKGFEKPSPI 440
Query: 171 QRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLS 230
Q A P L GRDL+ A TGSGKT AF P I +M + ++ +G PL L+LS
Sbjct: 441 QSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVMNKRKSKGSSKGRN---PLCLMLS 611
Query: 231 PTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER 290
PTREL+ QI + GV V YGG P Q+ L+ G+DI++ TPGR+ DL+E
Sbjct: 612 PTRELAQQISDVLCDAGKSCGVESVCLYGGTPKGAQISALKSGIDIVIGTPGRIQDLVEM 791
Query: 291 ARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLA 350
L + ++ LDEADRMLDMGFE +R I+ Q RQ ++FSAT+P + LA
Sbjct: 792 GICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQT----CSARQMVMFSATWPLAVHHLA 959
Query: 351 SDFLS-NYIFLAVGRVGSSTDL-IDQRVEYVQESDKRSHLMDLL---HAQRANGVQGKQA 405
+F+ N + + VG S + + Q VE + E + L+ LL H + N V
Sbjct: 960 QEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRV----- 1124
Query: 406 LTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAA 465
LVFV K +E L + A +I GD+SQ ER AL FK+G+ P+++ATDVAA
Sbjct: 1125--LVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAA 1298
Query: 466 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQE 525
RGLDIP V V+NF P ++DYVHRIGRTGRAGKKG+A FF N +A L ++++E
Sbjct: 1299RGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHLNKGLAGELVNVLRE 1478
Query: 526 ANQEVPAWLSRF 537
A Q VP L +F
Sbjct: 1479AGQVVPDDLLKF 1514
>TC78036 homologue to PIR|T06824|T06824 translation initiation factor -
garden pea, complete
Length = 1571
Score = 209 bits (532), Expect = 2e-54
Identities = 133/410 (32%), Positives = 217/410 (52%), Gaps = 4/410 (0%)
Frame = +3
Query: 126 AYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLM 185
A ED+ ET+ G + +F E+ + + L + I + + KP+ +Q+ A+ + GRD++
Sbjct: 135 ANEDMDFETTEG--VKAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVAPIIQGRDVI 308
Query: 186 ACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARK 245
A AQ+G+GKT+ + + T VR V AL++SPTREL+ Q +
Sbjct: 309 AQAQSGTGKTSMIALTVCQVVDTS---------VREV--QALIVSPTRELASQTEKVILT 455
Query: 246 FSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDE 305
++ GG + + +R+LE GV ++ TPGR+ D+++R + I+ L LDE
Sbjct: 456 IGDFINIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDE 635
Query: 306 ADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRV 365
+D ML GF+ QI + + PP Q L SAT P EI + + F+++ + + V R
Sbjct: 636 SDEMLSRGFKDQIYDVYRYL--PPD--LQVCLISATLPHEILEMTNKFMTDPVRILVKRD 803
Query: 366 GSSTDLIDQRVEYVQES----DKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALE 421
+ + I Q V+ D L D L +A ++F TK+ D L
Sbjct: 804 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA----------VIFCNTKRKVDWLT 953
Query: 422 HWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDL 481
+ NNF + +HGD Q+ER+A + F++G T +L+ TDV ARGLD+ V+ V+N+DL
Sbjct: 954 EKMRNNNFTVSAMHGDMPQRERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDL 1133
Query: 482 PNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVP 531
PN+ + Y+HRIGR+GR G+KG+A F ++ + R ++ E+P
Sbjct: 1134PNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMP 1283
>TC77435 similar to GP|7211427|gb|AAF40306.1| RNA helicase {Vigna radiata},
partial (67%)
Length = 1828
Score = 205 bits (522), Expect = 4e-53
Identities = 129/377 (34%), Positives = 194/377 (51%), Gaps = 3/377 (0%)
Frame = +1
Query: 144 NTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPII 203
N + + E L ++ K P+Q L G DL+ A+TG GKT AF PI+
Sbjct: 418 NAVSNFRISEPLRMKLKENKIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPIL 597
Query: 204 SGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPI 263
+ G G V P +VL PTREL+ Q++ + + G+ YGGAP
Sbjct: 598 ESLTNGPAKSVRKTGYGRV-PSVIVLLPTRELANQVYADFELYGSSLGLSACAVYGGAPY 774
Query: 264 NQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVE 323
Q +L RGVDI++ TPGR+ D +ER + LS +++ LDEAD ML MGF + I+
Sbjct: 775 GAQETKLRRGVDIVIGTPGRIKDHIERGNIDLSHLKFRVLDEADEMLRMGFVDDVELILG 954
Query: 324 QMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLA--VGRVGSSTDLIDQRVEYVQE 381
++ QT+LFSAT P ++++++ FL + A VG + +
Sbjct: 955 KVQ--DVTKVQTLLFSATLPSWVKQISTKFLKSDKKTADLVGNEKMKASTNVRHIILPCS 1128
Query: 382 SDKRSHLM-DLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQ 440
S R+ L+ D++ + G T++F E K+ A L L A +HGD Q
Sbjct: 1129STARAQLIPDIIRCYSSGG------RTIIFAEKKESASELAGLLP----GARALHGDIQQ 1278
Query: 441 QEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK 500
+RE L+ F+SG LVAT+VAARGLDI V ++ + P D++ Y+HR GRTGRAG
Sbjct: 1279SQREITLKGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 1458
Query: 501 KGLATAFFNENNTSMAR 517
G+A ++ +++A+
Sbjct: 1459TGVAVMLYDPRRSNIAK 1509
>TC76575 homologue to SP|Q40465|IF4V_TOBAC Eukaryotic initiation factor
4A-11 (eIF-4A-11) (eIF4A-11). [Common tobacco]
{Nicotiana tabacum}, complete
Length = 1627
Score = 198 bits (504), Expect = 4e-51
Identities = 130/389 (33%), Positives = 200/389 (50%), Gaps = 1/389 (0%)
Frame = +1
Query: 145 TFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIIS 204
TF + L E L + I + KP+ +Q+ I + G D++ AQ+G+GKTA FC I+
Sbjct: 256 TFDAMGLLENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQ 435
Query: 205 GIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPIN 264
+ G V ALVL+PTREL+ QI + R GV+V GG +
Sbjct: 436 QLDYG-----------LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR 582
Query: 265 QQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQ 324
+ R L+ GV ++V TPGR+ D+L R + I+ LDEAD ML GF+ QI I +
Sbjct: 583 EDQRILQTGVHVVVGTPGRVFDMLRRQSLRSDCIKMFVLDEADEMLSRGFKDQIYDIFQL 762
Query: 325 MDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQ-RVEYVQESD 383
+ PP Q +FSAT P E + F++ + + V R + + I Q V +E
Sbjct: 763 L--PPK--IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEW 930
Query: 384 KRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQER 443
K L DL +++FV T++ D L + + + HGD Q R
Sbjct: 931 KLETLCDLYETLAITQ-------SVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTR 1089
Query: 444 EAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGL 503
+ +R F+SG++ +L+ TD+ ARG+D+ V+ V+N+DLP ++Y+HRIGR+GR G+KG+
Sbjct: 1090DIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV 1269
Query: 504 ATAFFNENNTSMARSLQDLMQEANQEVPA 532
A F + M +Q +E+P+
Sbjct: 1270AINFVTLEDARMLADIQKFYNVIVEELPS 1356
>TC79189 similar to GP|21593647|gb|AAM65614.1 replication protein A1-like
{Arabidopsis thaliana}, partial (79%)
Length = 1251
Score = 110 bits (275), Expect(2) = 5e-51
Identities = 66/174 (37%), Positives = 102/174 (57%), Gaps = 1/174 (0%)
Frame = +1
Query: 143 VNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPI 202
+ +F ++ L E+L + + + P +Q AIP +L G+DL+ A+TGSGKT AF PI
Sbjct: 169 MKSFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPI 348
Query: 203 ISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAP 262
+ ++ A RP A V+SPTREL++QI E+ + GV+ V GG
Sbjct: 349 LHALL---EAPRPNHF------FACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGID 501
Query: 263 INQQLRELERGVDILVATPGRLVDLLERAR-VSLSMIRYLALDEADRMLDMGFE 315
+ QQ ++ + I+V TPGR++D L+ + SL+ ++YL LDEADR+L+ FE
Sbjct: 502 MVQQSVKIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFE 663
Score = 109 bits (273), Expect(2) = 5e-51
Identities = 64/178 (35%), Positives = 97/178 (53%)
Frame = +2
Query: 333 RQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLL 392
R+T LFSAT K++++L L N + + S+ D + Q+ ++ K +L+ +L
Sbjct: 704 RRTFLFSATMTKKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYIL 883
Query: 393 HAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKS 452
+ ++VF T L L A I+G SQ +R AL FKS
Sbjct: 884 TEMAGS-------TSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKS 1042
Query: 453 GNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNE 510
G+ IL+ TDVA+RGLDIP V V+N+D+P + DY+HR+GRT RAG+ G+A + N+
Sbjct: 1043GDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQ 1216
>TC76958 homologue to SP|P41382|IF4U_TOBAC Eukaryotic initiation factor
4A-10 (eIF-4A-10) (eIF4A-10). [Common tobacco]
{Nicotiana tabacum}, complete
Length = 1761
Score = 198 bits (503), Expect = 6e-51
Identities = 132/390 (33%), Positives = 206/390 (51%), Gaps = 1/390 (0%)
Frame = +3
Query: 144 NTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPII 203
++F + L E L + I + KP+ +Q+ I + G D++ AQ+G+GKTA FC
Sbjct: 285 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFC---- 452
Query: 204 SGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPI 263
SGI+ Q+ V T C ALVL+PTREL+ QI + R GV+V GG +
Sbjct: 453 SGIL-----QQLDYSV-TECQ-ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSV 611
Query: 264 NQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVE 323
+ R L GV ++V TPGR+ D+L R + I+ LDEAD ML GF+ QI I +
Sbjct: 612 REDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 791
Query: 324 QMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQ-RVEYVQES 382
+ P+ + Q +FSAT P E + F++ + + V R + + I Q V +E
Sbjct: 792 LL---PSKI-QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEE 959
Query: 383 DKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQE 442
K L DL +++FV T++ D L + + + HGD Q
Sbjct: 960 WKLDTLCDLYETLAITQ-------SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 1118
Query: 443 REAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKG 502
R+ +R F+SG++ +L+ TD+ ARG+D+ V+ V+N+DLP ++Y+HRIGR+GR G+KG
Sbjct: 1119RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 1298
Query: 503 LATAFFNENNTSMARSLQDLMQEANQEVPA 532
+A F ++ M +Q +E+P+
Sbjct: 1299VAINFVTTDDERMLSDIQKFYNVLIEELPS 1388
>TC92952 homologue to GP|14209595|dbj|BAB56090. putative ethylene-responsive
RNA helicase {Oryza sativa (japonica cultivar-group)},
partial (43%)
Length = 650
Score = 197 bits (502), Expect = 8e-51
Identities = 109/224 (48%), Positives = 146/224 (64%), Gaps = 1/224 (0%)
Frame = +2
Query: 286 DLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKE 345
D+LE +L + YL LDEADRMLDMGF+PQIRKIV Q+ RQT+ +SAT+PKE
Sbjct: 2 DMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPD----RQTLYWSATWPKE 169
Query: 346 IQRLASDFLSNYIFLAVGRVG-SSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQ 404
+++LA FL N + +G + I Q V+ V E K L+ LL + + G +
Sbjct: 170 VEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLE----DIMDGSR 337
Query: 405 ALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVA 464
L +F++TKKG D + L ++ +PA +IHGD+SQ ER+ L FKSG +PI+ ATDVA
Sbjct: 338 IL--IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 511
Query: 465 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFF 508
ARGLD+ V +V+N+D P ++DYVHRIGRTGRAG KG A FF
Sbjct: 512 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 643
>TC77964 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_90
{Arabidopsis thaliana}, partial (97%)
Length = 1454
Score = 179 bits (455), Expect = 2e-45
Identities = 138/412 (33%), Positives = 203/412 (48%), Gaps = 6/412 (1%)
Frame = +1
Query: 109 EEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPT 168
EE + EE++ + D+ + G V + F + L L + I + P+
Sbjct: 118 EELIDYEEEDEKAL--DSTKPTTESVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPS 291
Query: 169 PVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGI--MTGQPAQRPPRGVRTVCPLA 226
VQ IP ++ G D++ A++G GKTA F + I + GQ A A
Sbjct: 292 EVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVA-------------A 432
Query: 227 LVLSPTRELSMQIHEEARKFS-YQTGVRVVVAYGGAPINQQLRELERGVD-ILVATPGRL 284
LVL TREL+ QI E +FS Y ++V V YGG I L+ I+V TPGR+
Sbjct: 433 LVLCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRI 612
Query: 285 VDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPK 344
+ L + L +R+ LDE D+ML+ +RK V+++ +Q M+FSAT K
Sbjct: 613 LALTRDKDLGLKNVRHFILDECDKMLE---SLDMRKDVQEIFKLTPHDKQVMMFSATLSK 783
Query: 345 EIQRLASDFLSNYIFLAVGRVGSST--DLIDQRVEYVQESDKRSHLMDLLHAQRANGVQG 402
EI+ + F+ + + + V T L+ ++ +QE +K L DLL A N V
Sbjct: 784 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK-LQEPEKNRKLNDLLDALDFNQV-- 954
Query: 403 KQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATD 462
++FV++ A L L NFP+ IH SQ+ER + FK G ILVATD
Sbjct: 955 -----VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATD 1119
Query: 463 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTS 514
+ RG+DI V V+N+D+P+ D Y+HR+GR GR G KGLA F + S
Sbjct: 1120LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDS 1275
>BQ752049 similar to GP|173419|gb|A p68 RNA helicase {Schizosaccharomyces
pombe}, partial (44%)
Length = 779
Score = 176 bits (445), Expect = 3e-44
Identities = 97/223 (43%), Positives = 143/223 (63%), Gaps = 1/223 (0%)
Frame = +2
Query: 210 QPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRE 269
QP P G P+ L+L+PTREL++QI +E KF + +R YGG P Q+R+
Sbjct: 5 QPLLAPGDG-----PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRD 169
Query: 270 LERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPP 329
L RGV++ +ATPGRL+D+LE + +L + YL LDEADRMLDMGFEPQIRKI+ Q+
Sbjct: 170 LSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPD- 346
Query: 330 AGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVG-SSTDLIDQRVEYVQESDKRSHL 388
RQT+++SAT+PKE++ LA+DFL+++I + +G + ++ I Q VE V ES+KR +
Sbjct: 347 ---RQTLMWSATWPKEVRALAADFLTDFIQVNIGSMELAANHRITQIVEVVSESEKRDRM 517
Query: 389 MDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPA 431
+ L + K+ L+FV TK+ AD + +L + +PA
Sbjct: 518 IKHLE----KSMDSKENKVLIFVGTKRVADEITRFLRQDGWPA 634
Score = 62.4 bits (150), Expect = 5e-10
Identities = 34/100 (34%), Positives = 55/100 (55%)
Frame = +1
Query: 380 QESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRS 439
+E + RSH + +G+QG+Q L + + D +HGD+
Sbjct: 493 REREARSHDQA---PREVDGLQGEQGSHLCWHQACC*RD--HPLFATRRMARAVLHGDKQ 657
Query: 440 QQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNF 479
Q ER+ L FK+G +PI+VATDVA+RG+D+ ++ HV+N+
Sbjct: 658 QNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVINY 777
>TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA helicase
{Arabidopsis thaliana}, partial (89%)
Length = 1982
Score = 169 bits (429), Expect = 2e-42
Identities = 139/528 (26%), Positives = 230/528 (43%), Gaps = 57/528 (10%)
Frame = +2
Query: 61 NSGSRWAPPPRNDYRGGGGGRGGGGYGNRGGGGWDRREANPFADQD---------DSEEP 111
N+ +R PP GG G GGGG + G+ +R + + Q + +
Sbjct: 80 NNNNRGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQRHMMQNQHQQ 259
Query: 112 VTQEEQENT--------------------GINFDAYEDIP--VETSGGNVP--------- 140
Q +Q+N G + + E++ V++ +
Sbjct: 260 HYQNQQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARLK 439
Query: 141 -PPVNT--------------FAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLM 185
PP +T F + L L I + +P+P+Q +IPI+L G D++
Sbjct: 440 LPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 619
Query: 186 ACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARK 245
A A+ G+GKTAAF P + I + ++L PTREL++Q + ++
Sbjct: 620 ARAKNGTGKTAAFSIPALEKIDQDNNIIQ-----------VVILVPTRELALQTSQVCKE 766
Query: 246 FSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDE 305
++V+V GG + + L + V +LV TPGR++DL ++ L L +DE
Sbjct: 767 LGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDE 946
Query: 306 ADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSN-YIFLAVGR 364
AD++L F+P I ++++ +PP RQ ++FSATFP ++ +L YI +
Sbjct: 947 ADKLLSPEFQPSIEQLIQ--FLPP--TRQILMFSATFPVTVKDFKDRYLRKPYIINLMDE 1114
Query: 365 VGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWL 424
+ + I Q +V+E K L L + N +++F + + L +
Sbjct: 1115L--TLKGITQFYAFVEERQKVHCLNTLFSKLQIN-------QSIIFCNSVNRVELLAKKI 1267
Query: 425 CLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPND 484
+ IH Q R F++G LV TD+ RG+DI V V+NFD P +
Sbjct: 1268TELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKN 1447
Query: 485 IDDYVHRIGRTGRAGKKGLATAFFN-ENNTSMARSLQDLMQEANQEVP 531
+ Y+HR+GR+GR G GLA E+ ++ R Q+L E Q P
Sbjct: 1448SETYLHRVGRSGRFGHLGLAVNLVTYEDRFNLYRIEQELGTEIKQIPP 1591
>BG452245 similar to PIR|H86341|H8 hypothetical protein AAD30599.1 [imported]
- Arabidopsis thaliana, partial (18%)
Length = 653
Score = 167 bits (423), Expect = 1e-41
Identities = 89/216 (41%), Positives = 132/216 (60%), Gaps = 3/216 (1%)
Frame = +1
Query: 138 NVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAA 197
+VP PV ++ + L + I++ + KP P+Q A+P+ + GRD + A+TGSGKT A
Sbjct: 1 DVPKPVKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 180
Query: 198 FCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVA 257
F P++ I P V P+ L+++PTREL QIH + RKF+ G+R V
Sbjct: 181 FVLPMLRHIKDQPPV------VVGDGPIGLIMAPTRELVQQIHSDIRKFTKVMGIRCVPV 342
Query: 258 YGGAPINQQLRELERGVDILVATPGRLVDLLERAR---VSLSMIRYLALDEADRMLDMGF 314
YGG+ + QQ+ EL+RG +I+V TPGR++D+L + +L + YL +DEA RM DMGF
Sbjct: 343 YGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEAXRMFDMGF 522
Query: 315 EPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLA 350
EPQI +IV + RQT+LF AT P++++ LA
Sbjct: 523 EPQITRIVXNI----RPXRQTVLFXATXPRQVEILA 618
>TC89900 similar to GP|9759355|dbj|BAB10010.1 RNA helicase-like protein
{Arabidopsis thaliana}, partial (49%)
Length = 1515
Score = 162 bits (409), Expect = 5e-40
Identities = 116/354 (32%), Positives = 178/354 (49%), Gaps = 8/354 (2%)
Frame = +1
Query: 157 QNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPP 216
+ ++ Y K T VQ +P+ L G+D++A A+TG+GKT AF P I ++ P R
Sbjct: 337 KGVKDAGYEKMTIVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPNNR-- 510
Query: 217 RGVRTVCPLALVLSPTRELSMQIHEEARKF-SYQTGVRVVVAYGGAPINQQLRELERG-V 274
G L LV+ PTREL+ Q EA K Y + V GG ++ + + +++
Sbjct: 511 -GQNQTPILVLVVCPTRELACQAAAEATKLLKYHPTIGAQVVIGGTSLSSEQKRIQKNPC 687
Query: 275 DILVATPGRLVDLLERAR---VSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAG 331
IL+ATPGRL D + L ++ L LDEAD++LDMGF I KI+ +
Sbjct: 688 QILIATPGRLKDHIANTAGFASKLMGVKALVLDEADQLLDMGFRKDIEKIIASVPKQ--- 858
Query: 332 VRQTMLFSATFPKEIQRLASDFLS-NYIFLAVGRVGSSTDLIDQR-VEYVQESDKRSHLM 389
RQT++FSAT P + ++ + L ++ F+ + G+ R + + DK L+
Sbjct: 859 -RQTLMFSATIPDAVHQVCNVALKKDFEFINTVQXGTXETHSQVRXMHLIAPLDKHFSLL 1035
Query: 390 DLLHAQR-ANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALR 448
++ + A+ V K LVF T + L + I+ + Q R
Sbjct: 1036SVILKEHIADEVDYK---VLVFCTTAMVTSLVASLLGKLDLNVREIYSRKKQGFRNRVSD 1206
Query: 449 SFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKG 502
F+ ILV +DV+ARG+D P V+ VV +P D + Y+HR+GRTGR GK+G
Sbjct: 1207EFRKSKRLILVTSDVSARGVDYPDVSLVVQLGIPADKELYIHRLGRTGRIGKEG 1368
>CB065370 similar to PIR|F83151|F83 probable ATP-dependent RNA helicase
PA3950 [imported] - Pseudomonas aeruginosa (strain
PAO1), partial (42%)
Length = 634
Score = 160 bits (406), Expect = 1e-39
Identities = 91/209 (43%), Positives = 124/209 (58%), Gaps = 3/209 (1%)
Frame = -3
Query: 137 GNVPPPVNT---FAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSG 193
G PP T FA++ L E L Q +++ Y PTPVQ AIP L GRDLMA AQTG+G
Sbjct: 602 GFAEPPDGTDMNFAKLGLIEPLLQTLQQLGYTTPTPVQAQAIPAVLAGRDLMAAAQTGTG 423
Query: 194 KTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVR 253
KTA F P++ + + + +R ALVL PTREL+ Q+H R+++ +
Sbjct: 422 KTAGFALPVLQRLAL-EGEKVASNSIR-----ALVLVPTRELAEQVHANVREYAENLPLS 261
Query: 254 VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMG 313
YGG IN Q+ L RGVD+LVATPGRL+DL + + + ++ L LDEADRMLD+G
Sbjct: 260 TYAVYGGVSINPQMMRLRRGVDLLVATPGRLLDLFRQNAIKFNQVQMLVLDEADRMLDLG 81
Query: 314 FEPQIRKIVEQMDMPPAGVRQTMLFSATF 342
F +++ + + RQT+LFSATF
Sbjct: 80 FAEELQAVYAALPRK----RQTLLFSATF 6
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,457,616
Number of Sequences: 36976
Number of extensions: 255861
Number of successful extensions: 10479
Number of sequences better than 10.0: 437
Number of HSP's better than 10.0 without gapping: 3081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6793
length of query: 612
length of database: 9,014,727
effective HSP length: 102
effective length of query: 510
effective length of database: 5,243,175
effective search space: 2674019250
effective search space used: 2674019250
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146760.13