Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146759.1 + phase: 0 /pseudo
         (188 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87746 similar to GP|15021761|gb|AAK77908.1 AAA-metalloprotease...    87  2e-25
TC92976 similar to GP|15021761|gb|AAK77908.1 AAA-metalloprotease...    87  3e-18
BG588188 weakly similar to GP|20260382|gb| unknown protein {Arab...    30  0.72
TC76803 PIR|T09622|T09622 protein kinase MMK4 (EC 2.7.1.-)  cold...    28  2.1
TC84968                                                                28  2.8
TC83711 weakly similar to GP|14279437|gb|AAK58599.1 ethylene-ind...    27  3.6
AW687281 weakly similar to SP|Q9LSU3|PSA6 Proteasome subunit alp...    27  6.1
TC89618 weakly similar to PIR|T05940|T05940 cytochrome P450 83D1...    27  6.1
AW586898                                                               27  6.1
TC78929 similar to GP|1946358|gb|AAB63076.1| unknown protein {Ar...    27  6.1
BM779623 weakly similar to GP|6118407|gb| flavone synthase II {C...    27  6.1
BG588627 homologue to GP|21740798|emb OSJNBb0091E11.12 {Oryza sa...    26  8.0
TC91597 similar to GP|21323350|dbj|BAB97978. Hypothetical protei...    26  8.0

>TC87746 similar to GP|15021761|gb|AAK77908.1 AAA-metalloprotease FtsH
           {Pisum sativum}, partial (49%)
          Length = 1274

 Score = 86.7 bits (213), Expect(2) = 2e-25
 Identities = 57/112 (50%), Positives = 72/112 (63%), Gaps = 18/112 (16%)
 Frame = +2

Query: 23  GSFQEA-LKKLGTLMT--LIGGLILSFFYFRPFGKNQEISFQEFKIKVLEPGLVDHIVVS 79
           GSF EA +K+    +T  L+ GL LS     P  + Q+ISFQEFK K+LEPGLVDHIVVS
Sbjct: 446 GSFHEAFIKQFQNYLTPLLVVGLFLSSLSLGPRDQ-QQISFQEFKNKLLEPGLVDHIVVS 622

Query: 80  NKELAKIYVKNN-----ESEV----------AKYKYYFKIGSVDSFERKLKK 116
           NK +AKIYV+N+     +SEV           +YKY   IGSV+SFE KL++
Sbjct: 623 NKSVAKIYVRNSPLNQADSEVQGTLPAKGSGGQYKYIINIGSVESFEEKLEE 778



 Score = 45.4 bits (106), Expect(2) = 2e-25
 Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 16/86 (18%)
 Frame = +3

Query: 112 RKLKKD*ALIIMILYVLLILLKPTGFR--------CFSYYLHSCWLSEFSF--------I 155
           RK KK *AL + ILY+L ILLK  G R        C  + L   W  +           +
Sbjct: 774 RKRKKH*ALTLTILYLLHILLKWFGTRS**DLRQPCCFWELSGLWEGKCKVDLVLVVAPL 953

Query: 156 IRNVLMEC*TLEKHMLL**TNMPKTR 181
           +R V++E  TLEKHMLL *T +PKTR
Sbjct: 954 VR-VVVEYLTLEKHMLLK*TKIPKTR 1028


>TC92976 similar to GP|15021761|gb|AAK77908.1 AAA-metalloprotease FtsH
           {Pisum sativum}, partial (12%)
          Length = 824

 Score = 87.4 bits (215), Expect = 3e-18
 Identities = 56/104 (53%), Positives = 65/104 (61%), Gaps = 13/104 (12%)
 Frame = +3

Query: 1   MGNDKKKTN---SQSLAQWMKVAVVGSFQEALKK----------LGTLMTLIGGLILSFF 47
           MGNDKKKTN    QS  Q MK    GSFQEAL K          +   M LI G+ LS  
Sbjct: 255 MGNDKKKTNRKKKQSQTQKMKE---GSFQEALMKQFQEFRTPLSVAMAMILIMGITLSIL 425

Query: 48  YFRPFGKNQEISFQEFKIKVLEPGLVDHIVVSNKELAKIYVKNN 91
           YF    + Q+ISFQEF  K+LEPGLVDHIVVS+K +A+IYV N+
Sbjct: 426 YFDAGKQQQQISFQEFVNKLLEPGLVDHIVVSDKNVAQIYVMNS 557



 Score = 31.2 bits (69), Expect = 0.25
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +1

Query: 97  KYKYYFKIGSVDSFERKLKK 116
           +YKYYF IG+V +FE KL++
Sbjct: 700 QYKYYFNIGNVFAFEEKLER 759


>BG588188 weakly similar to GP|20260382|gb| unknown protein {Arabidopsis
           thaliana}, partial (6%)
          Length = 670

 Score = 29.6 bits (65), Expect = 0.72
 Identities = 14/36 (38%), Positives = 22/36 (60%)
 Frame = +1

Query: 89  KNNESEVAKYKYYFKIGSVDSFERKLKKD*ALIIMI 124
           + NES   KY  YFK  +  SF+++L KD   +++I
Sbjct: 487 EKNESSHGKYSSYFKHATHISFKKRLCKDRLALVLI 594


>TC76803 PIR|T09622|T09622 protein kinase MMK4 (EC 2.7.1.-)  cold- and
            drought-induced - alfalfa, complete
          Length = 1709

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 19/44 (43%), Positives = 21/44 (47%)
 Frame = +2

Query: 29   LKKLGTLMTLIGGLILSFFYFRPFGKNQEISFQEFKIKVLEPGL 72
            L KL  L+ LIG +I SFF         E S Q FKI     GL
Sbjct: 1556 LVKLFALL*LIGTMIYSFFLLYYSYSGYEFSEQNFKISYFLNGL 1687


>TC84968 
          Length = 526

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +2

Query: 86  IYVKNNESEVAKYKYYFKIGSVDSFERKLKKD*ALIIMILYVLLILLKPTGFRCFSYYLH 145
           I++  NES +AKY    K      +   + KD       +  + I  K TGF  FSY   
Sbjct: 8   IFLYKNESIMAKYFVIIKPERTMDYFS*ILKD------TVKRM*IFNKTTGFTFFSYNR* 169

Query: 146 SCW 148
           SCW
Sbjct: 170 SCW 178


>TC83711 weakly similar to GP|14279437|gb|AAK58599.1 ethylene-induced
           esterase {Citrus sinensis}, partial (24%)
          Length = 362

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 10/29 (34%), Positives = 21/29 (71%)
 Frame = -1

Query: 65  IKVLEPGLVDHIVVSNKELAKIYVKNNES 93
           I +++P ++DH V+  +  +KI++ NN+S
Sbjct: 110 IYIIDPSILDHPVLKFQWNSKIFIANNKS 24


>AW687281 weakly similar to SP|Q9LSU3|PSA6 Proteasome subunit alpha type 6
           (EC 3.4.25.1) (20S proteasome alpha subunit A), partial
           (65%)
          Length = 612

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 109 SFERKLKKD*ALIIMILYVLLILLKP 134
           S E  +KKD   I++IL V+++ LKP
Sbjct: 388 SVELMMKKDHNYIVLILLVIMLALKP 465


>TC89618 weakly similar to PIR|T05940|T05940 cytochrome P450 83D1p - soybean
           (fragment), partial (20%)
          Length = 883

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 19/47 (40%), Positives = 26/47 (54%)
 Frame = +2

Query: 46  FFYFRPFGKNQEISFQEFKIKVLEPGLVDHIVVSNKELAKIYVKNNE 92
           FF F  F   Q+   Q F +++   GL   IVVS+ E+AK   KNN+
Sbjct: 221 FFIFN-FQNFQKFMDQYFHLQL---GLRSAIVVSSAEIAKEIFKNND 349


>AW586898 
          Length = 629

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 20/47 (42%), Positives = 26/47 (54%), Gaps = 6/47 (12%)
 Frame = -2

Query: 114 LKKD*ALIIMI----LYVLLIL--LKPTGFRCFSYYLHSCWLSEFSF 154
           LKK   LI  +    +Y+L  L  LKPTG     ++ HSC LS F+F
Sbjct: 307 LKKSNILIFNV*SLEIYLLKFLKFLKPTGHFLCPFH-HSCALSSFNF 170


>TC78929 similar to GP|1946358|gb|AAB63076.1| unknown protein {Arabidopsis
           thaliana}, partial (63%)
          Length = 627

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 14/47 (29%), Positives = 27/47 (56%)
 Frame = -3

Query: 100 YYFKIGSVDSFERKLKKD*ALIIMILYVLLILLKPTGFRCFSYYLHS 146
           Y  K G++   +   +KD  ++++ + +L +  KPTGFR  S+ + S
Sbjct: 520 YSIK*GNITKRDM*SRKDVCIVVIGVPILSMRAKPTGFRESSHKVPS 380


>BM779623 weakly similar to GP|6118407|gb| flavone synthase II {Callistephus
           chinensis}, partial (38%)
          Length = 733

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 68  LEPGLVDHIVVSNKELAKIYVKNNESEVAKYKYYFKIGSV 107
           L  G V  IVVS+  LAK ++K NE   +  K    I +V
Sbjct: 239 LRLGSVPFIVVSSPSLAKEFLKTNELVYSSRKMNIAINTV 358


>BG588627 homologue to GP|21740798|emb OSJNBb0091E11.12 {Oryza sativa},
           partial (4%)
          Length = 807

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 122 IMILYVLLILLKPTGFRCFSYYLHSCWLSEFSFI 155
           I ++Y+LL  +KP    CFS+   S W+S  + +
Sbjct: 242 IALIYLLLTPVKPNFLSCFSF--PSSWISSTTLL 147


>TC91597 similar to GP|21323350|dbj|BAB97978. Hypothetical protein
           {Corynebacterium glutamicum ATCC 13032}, partial (5%)
          Length = 718

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 135 TGFRCFSYYLHSCWLSEF 152
           TGF CFS  L SC+L+ F
Sbjct: 372 TGFSCFSTGLSSCFLAGF 319


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.337    0.148    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,601,180
Number of Sequences: 36976
Number of extensions: 77189
Number of successful extensions: 814
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of query: 188
length of database: 9,014,727
effective HSP length: 91
effective length of query: 97
effective length of database: 5,649,911
effective search space: 548041367
effective search space used: 548041367
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)


Medicago: description of AC146759.1