BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146757.11 - phase: 0 /pseudo
(348 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC84607 similar to PIR|T00565|T00565 geranylgeranyl-diphosphate ... 295 3e-90
TC87935 similar to GP|15809972|gb|AAL06913.1 AT4g37930/F20D10_50... 30 1.1
AL368332 weakly similar to GP|21322711|e pherophorin-dz1 protein... 30 1.8
TC80961 weakly similar to GP|4206110|gb|AAD11424.1| cytochrome {... 30 1.8
TC80123 similar to GP|22335707|dbj|BAC10552. nine-cis-epoxycarot... 29 2.4
TC76906 similar to SP|P32294|AX2B_PHAAU Auxin-induced protein 22... 29 2.4
BG453316 weakly similar to GP|21627546|gb| CG30014-PA {Drosophil... 29 3.1
CA859280 28 4.0
BF633688 weakly similar to GP|14279437|gb ethylene-induced ester... 28 4.0
AJ497224 homologue to GP|15451108|gb| putative protein {Arabidop... 28 4.0
TC81032 similar to GP|21592492|gb|AAM64442.1 unknown {Arabidopsi... 28 5.2
TC79384 similar to GP|14532460|gb|AAK63958.1 AT5g13810/MAC12_24 ... 27 8.9
>TC84607 similar to PIR|T00565|T00565 geranylgeranyl-diphosphate
geranylgeranyltransferase I beta chain homolog At2g39550
- Arabidopsis, partial (32%)
Length = 612
Score = 295 bits (755), Expect(2) = 3e-90
Identities = 145/147 (98%), Positives = 146/147 (98%)
Frame = +3
Query: 1 MSSSEEASSMETTTIDKDLHVTFAQMMYHLLPNPYESQEINHLTLAYFVISSLDILNSLH 60
MSSSEEASSMETTTIDKDLHVTFAQMMYHLLPNPYESQEINHLTLAYFVISSLDILNSLH
Sbjct: 60 MSSSEEASSMETTTIDKDLHVTFAQMMYHLLPNPYESQEINHLTLAYFVISSLDILNSLH 239
Query: 61 LVEKEAVANWVLSFQVQRGTTNDPNNGQFYGFHGSKTSQFPPDENGVFHHNNSHLASTYC 120
LVEKEAVANWVLSFQVQRGTTNDPNNGQFYGFHGSKTSQFPPDENGVFHHNNSHLASTYC
Sbjct: 240 LVEKEAVANWVLSFQVQRGTTNDPNNGQFYGFHGSKTSQFPPDENGVFHHNNSHLASTYC 419
Query: 121 ALAILKIVGYDLSSLDSESMSSSMKNL 147
ALAILKIVGYDLSSLDSESMSSSMK +
Sbjct: 420 ALAILKIVGYDLSSLDSESMSSSMKRI 500
Score = 54.7 bits (130), Expect(2) = 3e-90
Identities = 24/26 (92%), Positives = 24/26 (92%)
Frame = +1
Query: 149 QPDGSFMPIHIGGETDLRFVYCAGWI 174
QPDGSFMPIHIGGETDLRFVYCA I
Sbjct: 505 QPDGSFMPIHIGGETDLRFVYCAAAI 582
>TC87935 similar to GP|15809972|gb|AAL06913.1 AT4g37930/F20D10_50
{Arabidopsis thaliana}, partial (29%)
Length = 884
Score = 30.4 bits (67), Expect = 1.1
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3
Query: 19 LHVTFAQMMYHLLPNPYESQEINHLTLAYFVIS 51
+ + A +++H LP P E+ ++HL L YF++S
Sbjct: 591 IRIFSATLLFHKLP-PKETNSVHHLHLLYFIVS 496
>AL368332 weakly similar to GP|21322711|e pherophorin-dz1 protein {Volvox
carteri f. nagariensis}, partial (10%)
Length = 478
Score = 29.6 bits (65), Expect = 1.8
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 13 TTIDKDLHVTFAQMMYHLLPNPYESQEINHLTLAYFVISSLDILNSLHLV 62
TTI + LH+T +++H +P+ HL + + SL L+SLHLV
Sbjct: 281 TTIHRHLHITRLLLLHHTSAHPHHHH--FHLLPLHTTLQSLS-LSSLHLV 421
>TC80961 weakly similar to GP|4206110|gb|AAD11424.1| cytochrome
{Mesembryanthemum crystallinum}, partial (59%)
Length = 583
Score = 29.6 bits (65), Expect = 1.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 24 AQMMYHLLPNPYESQEINHLTLAYFVI 50
A M YH +P +E+Q+I H+TL + I
Sbjct: 262 AIMSYHTVPGTHETQKIVHMTLHFIAI 342
>TC80123 similar to GP|22335707|dbj|BAC10552. nine-cis-epoxycarotenoid
dioxygenase4 {Pisum sativum}, partial (23%)
Length = 657
Score = 29.3 bits (64), Expect = 2.4
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Frame = -1
Query: 93 HGSKTSQFP-----PDENGVFHHNNSHLASTYCALAIL---------KIVGYDLSSLDSE 138
H S + P P HH+N+ L +TY L L K + D SL +
Sbjct: 255 HNSLNNHHPLPHHLPSPRKTAHHHNNPLHTTYIQLPPLSTHQSSPPPKTLALDSQSLHKQ 76
Query: 139 SMSSSMKN--LQQPDGSFMPI 157
+ SSS KN L P+ F+ I
Sbjct: 75 TYSSSPKNHWLSLPNQDFLLI 13
>TC76906 similar to SP|P32294|AX2B_PHAAU Auxin-induced protein 22B
(Indole-3-acetic acid induced protein ARG4). [Mung bean
Vigna radiata], partial (75%)
Length = 1141
Score = 29.3 bits (64), Expect = 2.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 7 ASSMETTTIDKDLHVTFAQMMYHLLPNPYESQEINH 42
AS E T I+ +H++ ++HL+ N YE + H
Sbjct: 1060 ASIQEKTWINNIIHISTLLYLFHLIANLYEISHLKH 953
>BG453316 weakly similar to GP|21627546|gb| CG30014-PA {Drosophila
melanogaster}, partial (3%)
Length = 626
Score = 28.9 bits (63), Expect = 3.1
Identities = 20/67 (29%), Positives = 30/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 84 PNNGQFYGFHGSKTSQF-PPDENGVFHHNNSHLASTYCALAILKIVGYDLSSLDSESMSS 142
PNN GF S+ S P +G HHN + +++ I+ G + S D E
Sbjct: 210 PNNVTSQGFCFSELSNMVPAQSHGQQHHNTGNCTTSFLLSEIMNNHGVNSSKKDQE-QDK 386
Query: 143 SMKNLQQ 149
S+K + Q
Sbjct: 387 SVKIMHQ 407
>CA859280
Length = 421
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/66 (25%), Positives = 37/66 (55%), Gaps = 6/66 (9%)
Frame = +2
Query: 29 HLLPNPYESQEINHLTLAYFVISSLDILNSLHLVEKEAVANWV------LSFQVQRGTTN 82
+++P +E++ + +F I SL +L+++ L+ K A+W+ +S ++ T
Sbjct: 71 NIVPYHNPKKELDEIDPDFFGIFSL-LLSTVGLIMKIKWASWISLVFAIISLTNEKATDQ 247
Query: 83 DPNNGQ 88
DPN+G+
Sbjct: 248 DPNSGR 265
>BF633688 weakly similar to GP|14279437|gb ethylene-induced esterase {Citrus
sinensis}, partial (44%)
Length = 501
Score = 28.5 bits (62), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = -2
Query: 94 GSKTSQFPPDENGVFHHNNSHLASTYCA 121
GS + FPP+EN V +H + S YC+
Sbjct: 455 GSNSILFPPNENSVSNHPVTGYLSIYCS 372
>AJ497224 homologue to GP|15451108|gb| putative protein {Arabidopsis
thaliana}, partial (6%)
Length = 400
Score = 28.5 bits (62), Expect = 4.0
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
Frame = -3
Query: 43 LTLAYFVISSLDILNSLHLVEKEAVANWVLSFQVQRGTTNDPN--NGQFYGFH 93
+T + V + ILNS+ K A + +Q +G TND N NG F+ H
Sbjct: 179 ITKSILVQDLITILNSITFTVKAAHSTSHSKYQAHQGGTNDCNQRNGPFFVSH 21
>TC81032 similar to GP|21592492|gb|AAM64442.1 unknown {Arabidopsis
thaliana}, partial (16%)
Length = 669
Score = 28.1 bits (61), Expect = 5.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 85 NNGQFYGFHGSKTSQFPPDENGVFHHNNSHLAS 117
+NG ++ H S+ S FPP+ + + H + H S
Sbjct: 634 SNGSYH*VHPSEISTFPPNFSALAHPHTPHFRS 536
>TC79384 similar to GP|14532460|gb|AAK63958.1 AT5g13810/MAC12_24
{Arabidopsis thaliana}, partial (14%)
Length = 873
Score = 27.3 bits (59), Expect = 8.9
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -1
Query: 76 VQRGTTNDPNNGQFYGFHGSKTSQFPPDENGVFHHNNSHLASTYC 120
+++ +D + F+ + ++ P + + HNNSH A T C
Sbjct: 135 LKKYNNSDTESIHFHYKPNTSSTTLHPHQKSSYFHNNSHTAKTSC 1
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.335 0.144 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,997,047
Number of Sequences: 36976
Number of extensions: 175202
Number of successful extensions: 1604
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of query: 348
length of database: 9,014,727
effective HSP length: 97
effective length of query: 251
effective length of database: 5,428,055
effective search space: 1362441805
effective search space used: 1362441805
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC146757.11