BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146755.5 - phase: 0
(485 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~... 196 2e-50
TC89654 weakly similar to PIR|T05644|T05644 hypothetical protein... 74 3e-28
TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far... 118 4e-27
TC83834 similar to PIR|G96565|G96565 F6D8.26 [imported] - Arabid... 99 3e-21
BG449141 similar to GP|15983442|gb At1g10240/F14N23_12 {Arabidop... 94 7e-20
CB892328 GP|15075873|em PROBABLE GLYCOSYL HYDROLASE PROTEIN {Sin... 82 4e-16
TC92547 similar to PIR|A56235|A56235 transcription activator Maf... 64 1e-10
BQ147857 weakly similar to GP|15983442|gb At1g10240/F14N23_12 {A... 64 2e-10
CB893278 weakly similar to PIR|T05645|T056 hypothetical protein ... 62 6e-10
BG586672 59 4e-09
CA917189 similar to PIR|T05645|T05 hypothetical protein F20D10.3... 57 2e-08
TC84106 similar to GP|9502168|gb|AAF88018.1| contains simlarity ... 47 1e-05
TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like... 44 1e-04
TC82992 homologue to PIR|T05645|T05645 hypothetical protein F20D... 30 2.1
>AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~similar to
Arabidopsis thaliana F20D10.300, partial (11%)
Length = 662
Score = 196 bits (498), Expect = 2e-50
Identities = 90/176 (51%), Positives = 122/176 (69%)
Frame = +1
Query: 222 DVLAFDATYKKIKYNTPLVIFSGVNHHNQSIIFGSAIIGDETEDTYVWLLKIFVEAMGGK 281
DVLAFD TYKK KYN PL IFSG NHH+Q+IIFG A++ DET ++Y W+L F+E M K
Sbjct: 1 DVLAFDTTYKKNKYNYPLCIFSGCNHHSQTIIFGVALLEDETIESYKWVLNRFLECMENK 180
Query: 282 LPVSVITDGDLSMRNAIRKVFPEAHHRLCAWHLIRNATSNIKNLHFVSKFKDCLLGDVDV 341
P +V+TDGD SMR AI++VFP+A HRLCAWHL +NA NIK F+ F+ + +
Sbjct: 181 FPKAVVTDGDGSMREAIKQVFPDASHRLCAWHLHKNAQENIKKTPFLEGFRKAMYSNFTP 360
Query: 342 DVFQRKWEELVTEFGLEENPWMLEMYQKRKMWAAAHFRGKFFAGFRTTSRCEGLHS 397
+ F+ W EL+ + LE N W+++ Y + +WA A+ R KFF RTTS+CE +++
Sbjct: 361 EQFEDFWSELIQKNELEGNAWVIKTYANKSLWATAYLRDKFFGRIRTTSQCEAINA 528
>TC89654 weakly similar to PIR|T05644|T05644 hypothetical protein F20D10.290
- Arabidopsis thaliana, partial (65%)
Length = 1358
Score = 73.6 bits (179), Expect(2) = 3e-28
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Frame = +3
Query: 258 IIGDETEDTYVWLLKIFVEAMGGKLPVSVITDGDLSMRNAIRKVFPEAHHRLCAWHLIRN 317
+I +E+E +Y+WL K ++ A+ G+ PVS+ TD D ++ A+ +V P HR C W + R
Sbjct: 375 LILNESEPSYIWLFKTWLRAVSGRPPVSITTDLDPVIQVAVAQVLPPTRHRFCKWSIFRE 554
Query: 318 ATSNIKNLH-----FVSKFKDCLLGDVDVDVFQRKWEELVTEF 355
S + +L+ F ++FK C+ V +D F+ W L+ +
Sbjct: 555 NRSKLAHLYQSNPTFDNEFKKCVHESVTIDEFESCWRSLLERY 683
Score = 70.1 bits (170), Expect(2) = 3e-28
Identities = 31/92 (33%), Positives = 48/92 (51%)
Frame = +2
Query: 166 RRMRWNSDAEQAVNFLKHMSSKDDMMFWRHTVHADGSLQHLFWCDGVSCMDYSIFGDVLA 225
R+ Q +++LK M +++ F+ D + ++FW D +YS FGD +
Sbjct: 98 RQRTLGGGGHQVLDYLKRMRAENHAFFYAVQSDVDNAGGNIFWADETCRTNYSYFGDTVI 277
Query: 226 FDATYKKIKYNTPLVIFSGVNHHNQSIIFGSA 257
FD TYK +Y P F+G NHH Q ++FG A
Sbjct: 278 FDTTYKTNQYRVPFASFTGFNHHGQPVLFGCA 373
>TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far-red
impaired response protein {Oryza sativa}, partial (7%)
Length = 1244
Score = 118 bits (296), Expect = 4e-27
Identities = 54/147 (36%), Positives = 80/147 (53%)
Frame = +2
Query: 170 WNSDAEQAVNFLKHMSSKDDMMFWRHTVHADGSLQHLFWCDGVSCMDYSIFGDVLAFDAT 229
W D + +F M ++ + + ++Q+LFW D Y FG+V+ D T
Sbjct: 707 WRGDVDAIHSFFHRMQKQNSQFYCAMDMDDKRNIQNLFWADARCRAAYEYFGEVITLDTT 886
Query: 230 YKKIKYNTPLVIFSGVNHHNQSIIFGSAIIGDETEDTYVWLLKIFVEAMGGKLPVSVITD 289
Y KY+ PLV F GVNHH Q+I+ G AI+ + T WL ++E M G P +IT+
Sbjct: 887 YLTSKYDLPLVPFVGVNHHGQTILLGCAILSNLDAKTLTWLFTRWLECMHGHAPNGIITE 1066
Query: 290 GDLSMRNAIRKVFPEAHHRLCAWHLIR 316
D +M+NAI FP+A HR C WH+++
Sbjct: 1067EDKAMKNAIEVAFPKARHRWCLWHIMK 1147
>TC83834 similar to PIR|G96565|G96565 F6D8.26 [imported] - Arabidopsis
thaliana, partial (24%)
Length = 1032
Score = 99.4 bits (246), Expect = 3e-21
Identities = 74/291 (25%), Positives = 126/291 (42%), Gaps = 14/291 (4%)
Frame = +3
Query: 2 RYHFPDREVAFMF------YNWYGCFH---GFAAR-KSRLIRNINGEVVQQTFLCHREGI 51
R FP +A F Y++Y C+ GF R K+ + + E C +G
Sbjct: 195 RKEFPAPALAMEFESYDDAYSYYICYAKEVGFCVRVKNSWFKRNSKEKYGAVLCCSSQGF 374
Query: 52 REEKYINSTSRKREHKPLSRCGCQAKVRVHIDVSSQRWYIKLFDDDHNHSFVKEKFERML 111
+ K +N+ ++ +R GC A +R+ + V SQRW I +HNH +
Sbjct: 375 KRTKDVNNLRKE------TRTGCPAMIRMKL-VESQRWRICEVTLEHNHVLGAK------ 515
Query: 112 PAHRKMSEYDKYQMNTMRQSGIS--TTRIHGYFASQAGGYQNVGYNRRD--MYNEQRKRR 167
H+ + + N++ S T +++ G N+ N RD +++ +
Sbjct: 516 -IHKSIKK------NSLPSSDAEGKTIKVYHALVIDTEGNDNLNSNARDDRAFSKYSNKL 674
Query: 168 MRWNSDAEQAVNFLKHMSSKDDMMFWRHTVHADGSLQHLFWCDGVSCMDYSIFGDVLAFD 227
D + NFL M + F+ + +G L++ W D S F DV+ FD
Sbjct: 675 NLRKGDTQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNALWVDAKSRAACGYFSDVIYFD 854
Query: 228 ATYKKIKYNTPLVIFSGVNHHNQSIIFGSAIIGDETEDTYVWLLKIFVEAM 278
TY KY PLV G+NHH QS++ G ++ E ++Y WL + +++ +
Sbjct: 855 NTYLVNKYEIPLVALVGINHHGQSVLLGCGLLAGEIIESYKWLFRTWIKCI 1007
>BG449141 similar to GP|15983442|gb At1g10240/F14N23_12 {Arabidopsis
thaliana}, partial (33%)
Length = 690
Score = 94.0 bits (232), Expect(2) = 7e-20
Identities = 42/163 (25%), Positives = 85/163 (51%), Gaps = 1/163 (0%)
Frame = +3
Query: 154 YNRRDMYNE-QRKRRMRWNSDAEQAVNFLKHMSSKDDMMFWRHTVHADGSLQHLFWCDGV 212
+ +D+ N Q R++ + + +++ KD + +T+ A+ L+++ W
Sbjct: 171 FTEKDVRNLLQSFRKLDPEEETLDLLRMCRNIKDKDPNFKFEYTLDANNRLENIAWSYAS 350
Query: 213 SCMDYSIFGDVLAFDATYKKIKYNTPLVIFSGVNHHNQSIIFGSAIIGDETEDTYVWLLK 272
S Y IFGD + FD T++ ++ PL ++ G+N++ FG ++ DET ++ W +K
Sbjct: 351 SIQLYDIFGDAVVFDTTHRLTAFDMPLGLWVGINNYGMPCFFGCVLLRDETVRSFSWAIK 530
Query: 273 IFVEAMGGKLPVSVITDGDLSMRNAIRKVFPEAHHRLCAWHLI 315
F+ M GK P +++TD ++ ++ A+ P H C W ++
Sbjct: 531 AFLGFMNGKAPQTILTDQNICLKEALSAEMPMTKHAFCIWMIV 659
Score = 21.2 bits (43), Expect(2) = 7e-20
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 99 NHSFVKEKFERMLPAHRKMSE 119
NH ++ R LPA+R +S+
Sbjct: 2 NHELLEPNQVRFLPAYRTISD 64
>CB892328 GP|15075873|em PROBABLE GLYCOSYL HYDROLASE PROTEIN {Sinorhizobium
meliloti}, partial (1%)
Length = 828
Score = 82.4 bits (202), Expect = 4e-16
Identities = 54/218 (24%), Positives = 99/218 (44%), Gaps = 4/218 (1%)
Frame = +1
Query: 8 REVAFMFYNWYGCFHGFAARKSRLIR--NINGEVVQQTFLCHREGIREEKYINSTSRKRE 65
++ A+ Y + GF+ RK + + N + + F C ++G + + + KR
Sbjct: 181 KDEAYDLYQEHAFKTGFSVRKGKELYYDNEKKKTRLKDFYCSKQGFKNNEPDGEVAYKRA 360
Query: 66 HKPLSRCGCQAKVRVHIDVSSQRWYIKLFDDDHNHSFVKEKFERMLPAHRKMSEYDKYQM 125
SR C A VR ++ W + DHNH FV + +L + R MS + ++
Sbjct: 361 D---SRTNCLAMVRFNVTKEGV-WKVTKLILDHNHEFVPLQQRYLLRSMRNMSNLKEDRI 528
Query: 126 NTMRQSGISTTRIHGYFASQAGGYQNVGYNRRDMYNEQRKRRMRW--NSDAEQAVNFLKH 183
++ I T + GY + GG G +DM+N ++++ DA+ +N L+
Sbjct: 529 KSLVNDAIRVTNVGGYLGKEVGGVDKRGVMLKDMHNYVSTGKLKFIEAGDAQSLLNHLQS 708
Query: 184 MSSKDDMMFWRHTVHADGSLQHLFWCDGVSCMDYSIFG 221
++D M ++ + + L ++FW DG S +DY G
Sbjct: 709 KQAQDSMFYYSVQLDHESRLNNVFWRDGKSVVDYIATG 822
>TC92547 similar to PIR|A56235|A56235 transcription activator MafB - chicken,
partial (6%)
Length = 1158
Score = 64.3 bits (155), Expect = 1e-10
Identities = 26/78 (33%), Positives = 50/78 (63%)
Frame = +3
Query: 1 MRYHFPDREVAFMFYNWYGCFHGFAARKSRLIRNINGEVVQQTFLCHREGIREEKYINST 60
++ F + A+ FY YG GF+ RK + RN +G + + F+C++ G+R++K+++
Sbjct: 924 LKLEFGPADEAYEFYYRYGKCKGFSIRKGDVRRNSSGIITMREFVCNKNGLRDKKHLSRN 1103
Query: 61 SRKREHKPLSRCGCQAKV 78
RKR+H+ L+R C+A++
Sbjct: 1104 DRKRDHRRLTRTNCEARL 1157
>BQ147857 weakly similar to GP|15983442|gb At1g10240/F14N23_12 {Arabidopsis
thaliana}, partial (26%)
Length = 560
Score = 63.5 bits (153), Expect = 2e-10
Identities = 36/139 (25%), Positives = 72/139 (50%), Gaps = 6/139 (4%)
Frame = +1
Query: 283 PVSVITDGDLSMRNAIRKVFPEAHHRLCAWHLIRNATSNIKNLHFVSKFKDCL-----LG 337
P +++TD + ++ AI PE+ H C WH++ + S+ L S++ + L
Sbjct: 4 PQTLLTDHNTWLKEAIAVEMPESKHAFCIWHIL-SKFSDWXYLLLGSQYDEWKADFHRLY 180
Query: 338 DVDV-DVFQRKWEELVTEFGLEENPWMLEMYQKRKMWAAAHFRGKFFAGFRTTSRCEGLH 396
++++ + F++ W ++V ++GL N ++ +Y R WA R FFAG + + E ++
Sbjct: 181 NLEMXEDFEKSWRQMVDKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSXCQTESIN 360
Query: 397 SEFGKYVSALTNLHDFFQQ 415
+++SA + F QQ
Sbjct: 361 VFIQRFLSAQSQPXRFLQQ 417
>CB893278 weakly similar to PIR|T05645|T056 hypothetical protein F20D10.300 -
Arabidopsis thaliana, partial (5%)
Length = 821
Score = 61.6 bits (148), Expect = 6e-10
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +3
Query: 5 FPDREVAFMFYNWYGCFHGFAARKSRLIRN-INGEVVQQTFLCHREGIREEKYINSTSRK 63
F RE A FY+ YG GF R R+ +N E++ Q F+C +EG R +KY++ R
Sbjct: 333 FNSREEARGFYDGYGRRIGFTVRIHHNRRSRVNNELIGQDFVCSKEGFRAKKYVHRKDRV 512
Query: 64 REHKPLSRCGCQAKVRVHIDVSSQRWYIKLFDDDHNHSFV 103
P +R GCQA +R+ + +W + F +H H +
Sbjct: 513 LPPPPATREGCQAMIRLALR-DEGKWVVTKFVKEHTHKLM 629
>BG586672
Length = 667
Score = 58.9 bits (141), Expect = 4e-09
Identities = 23/44 (52%), Positives = 34/44 (77%)
Frame = +3
Query: 1 MRYHFPDREVAFMFYNWYGCFHGFAARKSRLIRNINGEVVQQTF 44
M++HFP+ VA+ FYNWY +GF+AR+S++ RN N E++QQ F
Sbjct: 510 MKFHFPNIAVAYTFYNWYARMNGFSARRSKVRRNKNNEIIQQIF 641
>CA917189 similar to PIR|T05645|T05 hypothetical protein F20D10.300 -
Arabidopsis thaliana, partial (12%)
Length = 312
Score = 57.0 bits (136), Expect = 2e-08
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Frame = +1
Query: 277 AMGGKLPVSVITDGDLSMRNAIRKVFPEAHHRLCAWHLIRNATSNIKNL-----HFVSKF 331
AM G+ P+S+ TD D +++AI +VFP+ HR C WH+ + + ++ +F ++F
Sbjct: 7 AMSGRPPLSITTDHDSVIQSAIMQVFPDTRHRFCKWHIFKQCQEKLSHIFLQFPNFEAEF 186
Query: 332 KDCLLGDVDVDVFQRKWEELVTE 354
C+ +D F+ W T+
Sbjct: 187 HKCVNLTDSIDEFESCWSHF*TD 255
>TC84106 similar to GP|9502168|gb|AAF88018.1| contains simlarity to
Arabidopsis thaliana far-red impaired response protein
(GB:AAD51282.1), partial (25%)
Length = 673
Score = 47.4 bits (111), Expect = 1e-05
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +2
Query: 71 RCGCQAKVRVHIDVSS--QRWYIKLFDDDHNHSFVKEKFERMLPAHRKMSEYDKYQMNTM 128
RCGC AK+ + DV +W + F + HNH +++ R+LPA+RK+ E D+ ++ +
Sbjct: 413 RCGCDAKMYLSKDVVDGVSQWTVLQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLL 592
Query: 129 RQSG 132
++G
Sbjct: 593 SKAG 604
>TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like
transposase {Arabidopsis thaliana}, partial (57%)
Length = 2129
Score = 43.9 bits (102), Expect = 1e-04
Identities = 32/162 (19%), Positives = 62/162 (37%), Gaps = 4/162 (2%)
Frame = +1
Query: 223 VLAFDATYKKIKYNTPLVIFSGVNHHNQSIIFGSAIIGDETEDTYVWLLKIFVEAMGGKL 282
++A K KY + + + + A++ E ++++ W L A+
Sbjct: 757 IVALGGIQLKSKYLSTFLSATSFDADGGLFPLAFAVVDVENDESWTWFLSELHNALEVNT 936
Query: 283 P----VSVITDGDLSMRNAIRKVFPEAHHRLCAWHLIRNATSNIKNLHFVSKFKDCLLGD 338
+ ++DG + +AIR+ FP + H C HL N KN +
Sbjct: 937 ECMPQIIFLSDGQKGIVDAIRRKFPRSSHAFCMRHLSENIGKEFKNSRLIHLLWSAAYA- 1113
Query: 339 VDVDVFQRKWEELVTEFGLEENPWMLEMYQKRKMWAAAHFRG 380
++ F+ K E + E + W+ + + WA +F G
Sbjct: 1114TTINAFREKMAE-IEEVSPNASMWLQHFHPSQ--WALVYFEG 1230
>TC82992 homologue to PIR|T05645|T05645 hypothetical protein F20D10.300 -
Arabidopsis thaliana, partial (7%)
Length = 354
Score = 30.0 bits (66), Expect = 2.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 5 FPDREVAFMFYNWYGCFHGFAARKSRLIRN-INGEVVQQTFLCHREG 50
F E A FYN Y GF+ R S R+ +G ++Q+ +C +EG
Sbjct: 211 FESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQXVCAKEG 351
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.327 0.139 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,919,712
Number of Sequences: 36976
Number of extensions: 244479
Number of successful extensions: 1537
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of query: 485
length of database: 9,014,727
effective HSP length: 100
effective length of query: 385
effective length of database: 5,317,127
effective search space: 2047093895
effective search space used: 2047093895
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146755.5