TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146755.11 + phase: 0 
         (246 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC88857 weakly similar to GP|10177408|dbj|BAB10539. gene_id:K24M...   473  e-134
TC78363 similar to PIR|D86405|D86405 unknown protein [imported] ...   140  3e-34
CA989900 similar to PIR|D86405|D86 unknown protein [imported] - ...    75  2e-14
TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ...    30  1.1
BE247890 similar to PIR|B86448|B864 hypothetical protein AAF8133...    29  1.9
BQ144103 homologue to GP|13436053|gb| Similar to aspartyl aminop...    28  3.2
TC79097 weakly similar to GP|20197587|gb|AAD14519.2 expressed pr...    27  5.5
TC91270 weakly similar to PIR|T38299|T38299 probable beta-adapti...    27  5.5

>TC88857 weakly similar to GP|10177408|dbj|BAB10539.
           gene_id:K24M7.17~unknown protein {Arabidopsis thaliana},
           partial (47%)
          Length = 793

 Score =  473 bits (1217), Expect = e-134
 Identities = 236/238 (99%), Positives = 236/238 (99%)
 Frame = +2

Query: 1   MSGGVGPTGCDISLPKEEQEIEHKEEQDKSLNKSTSTPQRKTSFLSFRQLNCLAVVVVLS 60
           MSGGVGPTGCDISLPKEEQEIEHKEEQDKSLNKSTSTPQRKTSFLSFRQLNCLAVVVVLS
Sbjct: 80  MSGGVGPTGCDISLPKEEQEIEHKEEQDKSLNKSTSTPQRKTSFLSFRQLNCLAVVVVLS 259

Query: 61  ASGMVSPEDFGFVLFSVIYMCFISKVAFPSHPSKEQPPIFTQQIKILKIYVFIGAIIGLY 120
           ASGMVSPEDFGFVLFSVIYMCFISKVAFPSHPSKEQPPIFTQQIKILKIYVFIGAIIGLY
Sbjct: 260 ASGMVSPEDFGFVLFSVIYMCFISKVAFPSHPSKEQPPIFTQQIKILKIYVFIGAIIGLY 439

Query: 121 APIAYILHGIFEGDKEGIKAATPHVFLLASQVFMEGVAFSNGFSSPIRAFVPVIYNSRRI 180
           APIAYILHGIFEGDKEGIKAATPHVFLLASQVFMEGVAFSNGFSSPIRAFVPVIYNSRRI
Sbjct: 440 APIAYILHGIFEGDKEGIKAATPHVFLLASQVFMEGVAFSNGFSSPIRAFVPVIYNSRRI 619

Query: 181 FTIVDWLRDEISKVGEEHSGSYKRIYAGRALAVANMAFWCFNLFGFLIPVYLPRVFKA 238
           FTIVDWLRDEISKVGEEHSGSYKRIYAGRALAVANMAFWCF L GFLIPVYLPRVFKA
Sbjct: 620 FTIVDWLRDEISKVGEEHSGSYKRIYAGRALAVANMAFWCFKLLGFLIPVYLPRVFKA 793


>TC78363 similar to PIR|D86405|D86405 unknown protein [imported] -
           Arabidopsis thaliana, partial (82%)
          Length = 1105

 Score =  140 bits (354), Expect = 3e-34
 Identities = 77/203 (37%), Positives = 121/203 (58%), Gaps = 8/203 (3%)
 Frame = +1

Query: 49  QLNCLAVVVVLSASGMVSPEDFGFVLFSVIYMCFISKVAFPSHPS----KEQPPIFTQQI 104
           +L  +A ++V SASG+V   D  F   +  Y+  +++ AFPS PS     +Q  IF Q  
Sbjct: 241 ELQLVAFILVFSASGLVPLLDLVFPALASAYILALARYAFPSSPSTTSNSQQQEIF-QVS 417

Query: 105 KILKIYVFIGAIIGLYAPIAYILHGIFEGDKEGIKAATPHVFLLASQVFMEGVAFS-NGF 163
            + ++Y+ +G  IGL+ P+AY+L G   GD+  +++ATPH+FLL+ Q+  E +  S + F
Sbjct: 418 SMFRMYIIVGTTIGLFLPLAYVLGGFARGDQHAVRSATPHLFLLSFQILTENIISSLSLF 597

Query: 164 SSPIRAFVPVIYNSRRIFTIVDWLRDEISKVGEEHSGSYKR---IYAGRALAVANMAFWC 220
           S P+RA VP+IY  RRIF  +DW+ D         +  ++     + G+ LAVAN+A++ 
Sbjct: 598 SPPVRALVPMIYTIRRIFVDIDWINDVWLNKTFPANARFQDTAWYWFGKGLAVANLAYFS 777

Query: 221 FNLFGFLIPVYLPRVFKAYYSSQ 243
            NL  FLIP +LPR F+ Y+  +
Sbjct: 778 INLCVFLIPRFLPRAFERYFQER 846


>CA989900 similar to PIR|D86405|D86 unknown protein [imported] - Arabidopsis
           thaliana, partial (59%)
          Length = 714

 Score = 75.5 bits (184), Expect = 2e-14
 Identities = 57/200 (28%), Positives = 88/200 (43%), Gaps = 4/200 (2%)
 Frame = +3

Query: 49  QLNCLAVVVVLSASGMVSPEDFGFVLFSVIYMCFISKVAFPSHPSKEQPPIFTQQIKILK 108
           +L  +A ++V SASG+V   D  F   +  Y+  +++ AFPS PS       +QQ +I  
Sbjct: 177 ELQLVAFILVFSASGLVPLLDLVFPALASAYILALARYAFPSSPSTTSN---SQQQEIF- 344

Query: 109 IYVFIGAIIGLYAPIAYILHGIFEGDKEGIKAATPHVFLLASQVFMEGVAFSNG-FSSPI 167
                                                     Q+  E +  S   FS P+
Sbjct: 345 ------------------------------------------QILTENIISSLSLFSPPV 398

Query: 168 RAFVPVIYNSRRIFTIVDWLRDEISKVGEEHSGSYKRI---YAGRALAVANMAFWCFNLF 224
           RA VP+IY  RRIF  +DW+ D         +  ++     + G+ LAVAN+A++  NL 
Sbjct: 399 RALVPMIYTIRRIFVDIDWINDVWLNKTFPANARFQDTAWYWFGKGLAVANLAYFSINLC 578

Query: 225 GFLIPVYLPRVFKAYYSSQK 244
            FLIP +LPR F+ Y+  ++
Sbjct: 579 VFLIPRFLPRAFERYFQERR 638


>TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
           partial (61%)
          Length = 1288

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -1

Query: 112 FIGAIIGLYAPIAYILHGIFEGDKEGIKAATPHVFLLASQVFMEGVAFSNGFSS 165
           F+GA+  L A  A  L    E D E     +   F   +  F+EG AF+ GFSS
Sbjct: 829 FVGALTFLEAFAAGFLSSSSE-DSESSSEDSVSAFFAGTLPFLEGTAFAAGFSS 671


>BE247890 similar to PIR|B86448|B864 hypothetical protein AAF81330.1
           [imported] - Arabidopsis thaliana, partial (7%)
          Length = 652

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 22/119 (18%)
 Frame = +1

Query: 12  ISLPKEEQEIEHKEEQDKSLNKSTSTPQRKTSFLSFRQLNCLAVVVVLSASGMV------ 65
           I L +EE  I  + +QD+ L   +   +   S  +++ L C  + + +   G +      
Sbjct: 274 IELSEEEITINDQLQQDELLVVESIYGENVFSLDTWKGLRCFQIHINIDVLGEIGITAKV 453

Query: 66  -----------SPEDFGF-----VLFSVIYMCFISKVAFPSHPSKEQPPIFTQQIKILK 108
                      + +DF +      L  ++  C + K ++PSH    QPPIFT  +K L+
Sbjct: 454 NSVNELETLSNNSDDFLYSFKVQYLPPIVLTCLLPK-SYPSH----QPPIFTISVKWLE 615


>BQ144103 homologue to GP|13436053|gb| Similar to aspartyl aminopeptidase
           {Homo sapiens}, partial (3%)
          Length = 971

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 42  TSFLSFRQLNCLAVVVVLSASGMVSPEDFGFVLFSVIYMCFISKVAFPSHPSKEQP 97
           +SF S+  +    +V+VLS   + S     F + S+    FIS + FPS P    P
Sbjct: 482 SSF*SYFIITIFVIVIVLSPRAI*SSPHISFPILSIH---FISHIPFPSIPISRFP 640


>TC79097 weakly similar to GP|20197587|gb|AAD14519.2 expressed protein
            {Arabidopsis thaliana}, partial (3%)
          Length = 1539

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 182  TIVDWLRDEISKVGEEHSGSYKRIYAGRALAVANMAFWCFNLFGFLIPVYLPRVFKAY 239
            T+   LRD + +   E S +Y  I       +   + +CFNLF FL+  +   VF  Y
Sbjct: 1337 TLFPPLRDNVQRSVPECSIAYFIIPCLLLSELFASSIFCFNLFYFLLEHFTSLVFHVY 1510


>TC91270 weakly similar to PIR|T38299|T38299 probable beta-adaptin clatharin
           assembly protein - fission yeast (Schizosaccharomyces
           pombe), partial (2%)
          Length = 664

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 83  ISKVAFPSHPSKEQPPIFTQQIKILK 108
           +SK    + P+K  PPIF Q+I  LK
Sbjct: 437 LSKFIL*TRPNKHSPPIFLQKINSLK 360


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.324    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,658,719
Number of Sequences: 36976
Number of extensions: 102480
Number of successful extensions: 804
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of query: 246
length of database: 9,014,727
effective HSP length: 94
effective length of query: 152
effective length of database: 5,538,983
effective search space: 841925416
effective search space used: 841925416
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)