TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146751.11 - phase: 0 
         (399 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC83378 weakly similar to PIR|D96631|D96631 RNA polymerase subun...   298  2e-81
TC84510 similar to PIR|D96631|D96631 RNA polymerase subunit (iso...   282  2e-76
TC85417 similar to SP|Q39211|RP3A_ARATH DNA-directed RNA polymer...   113  1e-25
TC79550 similar to GP|21593370|gb|AAM65319.1 DNA-directed RNA po...    39  0.004
TC88486 similar to GP|19386796|dbj|BAB86175. putative alpha-gluc...    31  0.96
BQ141699 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, pa...    30  1.3
BG451470 similar to GP|2191177|gb|A belongs to the SPOU family o...    29  3.7
TC83938                                                                28  8.2

>TC83378 weakly similar to PIR|D96631|D96631 RNA polymerase subunit (isoform
           B) [imported] - Arabidopsis thaliana, partial (27%)
          Length = 452

 Score =  298 bits (763), Expect = 2e-81
 Identities = 150/150 (100%), Positives = 150/150 (100%)
 Frame = +1

Query: 1   MSSSGDESMASEIDEQEQNGGRGIPDYIMNLEDVPSTLPTHLELQKTRVFCNLDAPQHTD 60
           MSSSGDESMASEIDEQEQNGGRGIPDYIMNLEDVPSTLPTHLELQKTRVFCNLDAPQHTD
Sbjct: 1   MSSSGDESMASEIDEQEQNGGRGIPDYIMNLEDVPSTLPTHLELQKTRVFCNLDAPQHTD 180

Query: 61  TIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFDMIGIDPAVANAFRRILIAE 120
           TIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFDMIGIDPAVANAFRRILIAE
Sbjct: 181 TIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFDMIGIDPAVANAFRRILIAE 360

Query: 121 VPTMAIERVYIANNTSLVQDEVLSHRLGLI 150
           VPTMAIERVYIANNTSLVQDEVLSHRLGLI
Sbjct: 361 VPTMAIERVYIANNTSLVQDEVLSHRLGLI 450


>TC84510 similar to PIR|D96631|D96631 RNA polymerase subunit (isoform B)
           [imported] - Arabidopsis thaliana, partial (32%)
          Length = 509

 Score =  282 bits (721), Expect = 2e-76
 Identities = 138/138 (100%), Positives = 138/138 (100%)
 Frame = +3

Query: 262 VKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKA 321
           VKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKA
Sbjct: 3   VKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKA 182

Query: 322 VVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFT 381
           VVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFT
Sbjct: 183 VVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFT 362

Query: 382 EAVKILEDKCERVITELS 399
           EAVKILEDKCERVITELS
Sbjct: 363 EAVKILEDKCERVITELS 416


>TC85417 similar to SP|Q39211|RP3A_ARATH DNA-directed RNA polymerase II 36
           kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II
           subunit 3)., partial (64%)
          Length = 855

 Score =  113 bits (283), Expect = 1e-25
 Identities = 78/233 (33%), Positives = 122/233 (51%), Gaps = 9/233 (3%)
 Frame = +1

Query: 87  KVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHR 146
           +V+++ + D+ M+F++   D +VANA RR++I+EVPT+AI+ V I  N+S++ DE ++HR
Sbjct: 118 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 297

Query: 147 LGLIPIDADPKL---FEYPDDA--GGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLP 201
           LGLIP+ ++  +   F    DA  G    E  ++ F   V+C   Q  L V S  L    
Sbjct: 298 LGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQ-TLDVSSKDL---- 462

Query: 202 NGSELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHA 261
               + ++ T +  D             +P            +I+ KL  GQE+ L A A
Sbjct: 463 ----ISSDHTVTPVD-------------VPGGDASIESDGRGIIIVKLRRGQELRLRAIA 591

Query: 262 VKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELA----EELVSKCPAKVFD 310
            KGIGK HAKWSP AT  +   P++ + +D+ + L     +E V   P +VFD
Sbjct: 592 RKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFD 750


>TC79550 similar to GP|21593370|gb|AAM65319.1 DNA-directed RNA polymerase II
            third largest subunit {Arabidopsis thaliana}, partial
           (31%)
          Length = 612

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 25/88 (28%), Positives = 47/88 (53%)
 Frame = +2

Query: 307 KVFDIEDIGRGRKKAVVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIF 366
           +VFDI+ +    ++ +V +  A +   E I++A+   + G        + +   +D FIF
Sbjct: 11  RVFDIDPV---TQQVMVVDPEAYSYDDEVIKKAEAMGKPG-------LIEITAKQDSFIF 160

Query: 367 TIESTGAIPPDVLFTEAVKILEDKCERV 394
           T+ESTGA+    L   +++IL+ K + V
Sbjct: 161 TVESTGAVKASQLLLNSIEILKQKLDAV 244


>TC88486 similar to GP|19386796|dbj|BAB86175. putative alpha-glucosidase 1
           {Oryza sativa (japonica cultivar-group)}, partial (13%)
          Length = 1233

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
 Frame = -1

Query: 307 KVFDIEDIGRGRKKAVVKNARACTLCRECIREA--DEGEEGGEGEK 350
           K+  + D+ RG+++   +  R C    E + E   D+ EE G+GEK
Sbjct: 330 KLRKVHDLWRGKRRNDARKMRLCCRSNEVMNEKKDDDDEEEGDGEK 193


>BQ141699 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, partial (1%)
          Length = 1217

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 340 DEGEEGGEGEKWTDRVSLRRVKDHFIFTIE 369
           +EG  GGEGE       +RRV+ H++  +E
Sbjct: 483 EEGGTGGEGEACASAGFVRRVRPHYVLNVE 572


>BG451470 similar to GP|2191177|gb|A belongs to the SPOU family of rRNA
           methylases {Arabidopsis thaliana}, partial (19%)
          Length = 656

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = -3

Query: 337 READEGEEGGEGEKWTDRV 355
           RE  +G EGGEG KW ++V
Sbjct: 228 REKRKGGEGGEGRKWREKV 172


>TC83938 
          Length = 737

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 23/102 (22%), Positives = 38/102 (36%), Gaps = 15/102 (14%)
 Frame = +3

Query: 284 PEVVLTKDVKDELAEELVSKCPAKVF-----------DIEDIGRGRKKAVVKNARACTLC 332
           P + +TK VK        +   A+VF           DIED      + +V  ++ CT+ 
Sbjct: 324 PPIAITKPVKHRQETSKTNSNNAQVFLNDDAIMKVSSDIEDQFLKDDEILVSKSKLCTIV 503

Query: 333 RECIREADEGEEGGEGE----KWTDRVSLRRVKDHFIFTIES 370
            +C  +  +G+     E     W     LR +       IE+
Sbjct: 504 SQCPSKPAQGDPSQRDED*SYSWVVTKELRNLVSENYLAIEN 629


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.315    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,685,521
Number of Sequences: 36976
Number of extensions: 137664
Number of successful extensions: 645
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of query: 399
length of database: 9,014,727
effective HSP length: 98
effective length of query: 301
effective length of database: 5,391,079
effective search space: 1622714779
effective search space used: 1622714779
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 59 (27.3 bits)