TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146743.2 - phase: 0 
         (68 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292...   108  4e-25
BM814840 weakly similar to GP|15128241|db helicase-like protein ...    90  1e-19
AJ497367 similar to GP|14140286|gb putative helicase {Oryza sati...    63  2e-11
CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis ...    61  7e-11
TC84660 similar to PIR|D86481|D86481 hypothetical protein AAG282...    42  5e-05
TC80146                                                                37  0.001
TC80364 weakly similar to SP|P50165|TRNH_DATST Tropinone reducta...    27  2.0
TC78985 similar to PIR|T06001|T06001 hypothetical protein F17M5....    25  7.5

>CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 572

 Score =  108 bits (270), Expect = 4e-25
 Identities = 53/68 (77%), Positives = 61/68 (88%)
 Frame = -2

Query: 1   MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
           MTINKSQGQSL+H+GVYLPS +FSHGQLYVA+SRVTSR GLKILI++DD ++  V SNVV
Sbjct: 352 MTINKSQGQSLKHIGVYLPSSVFSHGQLYVALSRVTSREGLKILISNDDGEDDCVTSNVV 173

Query: 61  YREVFRNL 68
           YREVF NL
Sbjct: 172 YREVFHNL 149


>BM814840 weakly similar to GP|15128241|db helicase-like protein {Oryza
           sativa (japonica cultivar-group)}, partial (6%)
          Length = 733

 Score = 90.1 bits (222), Expect = 1e-19
 Identities = 43/68 (63%), Positives = 53/68 (77%)
 Frame = +3

Query: 1   MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
           MTINKSQGQ+L  VG+YLP P+F+HGQLYVA+SRV SR GLKILI D++        NVV
Sbjct: 204 MTINKSQGQTLTSVGLYLPRPVFTHGQLYVAVSRVKSRSGLKILITDENGSPSSSTVNVV 383

Query: 61  YREVFRNL 68
           Y+EVF+ +
Sbjct: 384 YQEVFQKI 407


>AJ497367 similar to GP|14140286|gb putative helicase {Oryza sativa
          (japonica cultivar-group)}, partial (1%)
          Length = 543

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 30/46 (65%), Positives = 39/46 (84%)
 Frame = +1

Query: 23 FSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVVYREVFRNL 68
          FS+G+LYVA+SRVTSR GLKIL+  +D + ++  SNVVY+EVFRNL
Sbjct: 19 FSNGKLYVAVSRVTSRKGLKILLAHEDGNCMNTTSNVVYKEVFRNL 156


>CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis thaliana},
           partial (3%)
          Length = 748

 Score = 61.2 bits (147), Expect = 7e-11
 Identities = 31/47 (65%), Positives = 40/47 (84%)
 Frame = -1

Query: 22  IFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVVYREVFRNL 68
           +FSHGQLYVAISRV+SR GLKIL+ D++ D ID  +NVVY+ VF+N+
Sbjct: 274 VFSHGQLYVAISRVSSRNGLKILMIDENGDCIDNTTNVVYK-VFQNV 137


>TC84660 similar to PIR|D86481|D86481 hypothetical protein AAG28292.1
          [imported] - Arabidopsis thaliana, partial (1%)
          Length = 1009

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 20/29 (68%), Positives = 23/29 (78%)
 Frame = +2

Query: 10 SLEHVGVYLPSPIFSHGQLYVAISRVTSR 38
          S+   G+YLP PIF HG LYVA+SRVTSR
Sbjct: 68 SMATKGMYLPQPIF*HG*LYVALSRVTSR 154


>TC80146 
          Length = 476

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = -3

Query: 2   TINKSQGQSLEHVGVYLPSPIFSHGQLY 29
           TINKS+ QSL ++ +YL  PIFSH ++Y
Sbjct: 450 TINKSR*QSLSYMKIYLSRPIFSHEEMY 367


>TC80364 weakly similar to SP|P50165|TRNH_DATST Tropinone reductase homolog
           (EC 1.1.1.-) (P29X). [Jimsonweed  Common thornapple]
           {Datura stramonium}, partial (66%)
          Length = 811

 Score = 26.6 bits (57), Expect = 2.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 20  SPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
           S IF HG+L + ++        KI+ N D+D N  + +N V
Sbjct: 317 SSIF-HGKLNILVNNAAKPTSKKIIDNTDEDINTTLGTNFV 436


>TC78985 similar to PIR|T06001|T06001 hypothetical protein F17M5.260 -
            Arabidopsis thaliana, partial (33%)
          Length = 2496

 Score = 24.6 bits (52), Expect = 7.5
 Identities = 12/37 (32%), Positives = 19/37 (50%)
 Frame = +1

Query: 11   LEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILIND 47
            L+H G++  S   +HG+L+    R   R G  +  ND
Sbjct: 1102 LQHQGIFYVSTRGNHGKLHTVFLREAYRKGELVEPND 1212


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,640,435
Number of Sequences: 36976
Number of extensions: 15902
Number of successful extensions: 131
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of query: 68
length of database: 9,014,727
effective HSP length: 44
effective length of query: 24
effective length of database: 7,387,783
effective search space: 177306792
effective search space used: 177306792
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)