BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146722.13 + phase: 0
(142 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF640998 similar to GP|22136786|gb unknown protein {Arabidopsis ... 253 2e-68
TC87806 similar to GP|21592931|gb|AAM64881.1 phosphoserine amino... 31 0.19
BQ141541 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, pa... 30 0.25
TC88542 similar to GP|17065530|gb|AAL32919.1 Unknown protein {Ar... 30 0.42
TC85117 similar to GP|21593254|gb|AAM65203.1 S-adenosyl-L-methio... 28 0.94
BQ141682 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 28 1.2
TC93857 similar to SP|Q05049|MUC1_XENLA Integumentary mucin C.1 ... 28 1.6
TC90113 similar to PIR|C86301|C86301 arginine/serine-rich protei... 27 2.1
BG647590 similar to GP|22135988|gb putative protein {Arabidopsis... 27 2.7
BF641241 homologue to GP|14279070|dbj tRNA isopentenyltransferas... 27 2.7
TC78318 similar to PIR|T45852|T45852 hypothetical protein F3A4.7... 27 2.7
TC93648 similar to GP|14279070|dbj|BAB59048. tRNA isopentenyltra... 27 2.7
TC77351 homologue to GP|10175808|dbj|BAB06904. BH3185~unknown {B... 27 2.7
TC82669 27 3.6
TC86804 similar to GP|5725342|emb|CAA63650.1 ribosomal protein S... 27 3.6
BQ136037 similar to GP|21322711|em pherophorin-dz1 protein {Volv... 27 3.6
TC80199 weakly similar to GP|21593112|gb|AAM65061.1 unknown {Ara... 26 4.7
TC84278 similar to PIR|T02567|T02567 probable ATP-binding casset... 26 4.7
BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich g... 26 4.7
BQ144022 homologue to GP|22831315|dbj hypothetical protein~predi... 23 5.1
>BF640998 similar to GP|22136786|gb unknown protein {Arabidopsis thaliana},
partial (61%)
Length = 496
Score = 253 bits (645), Expect = 2e-68
Identities = 124/149 (83%), Positives = 125/149 (83%), Gaps = 21/149 (14%)
Frame = +1
Query: 3 CMNNIFTPFPLTAGNRNPTIYFPRRRPNSVCLVANSPESPSPPPEIELEFVGPKPEGDGS 62
CMNNIFTPFPLTAGNRNPTIYFPRRRPNSVCLVANSPESPSPPPEIELEFVGPKPEGDGS
Sbjct: 49 CMNNIFTPFPLTAGNRNPTIYFPRRRPNSVCLVANSPESPSPPPEIELEFVGPKPEGDGS 228
Query: 63 FPVDKVKAISGEKLMRSIMSDNKIDLYATYGKLMNCGGGGSCGTCIVE------------ 110
FPVDKVKAISGEKLMRSIMSDNKIDLYATYGKLMNCGGGGSCGTCIVE
Sbjct: 229 FPVDKVKAISGEKLMRSIMSDNKIDLYATYGKLMNCGGGGSCGTCIVEIIEGKDLLNERT 408
Query: 111 ---------KPESWRLACQTIVGNKENSG 130
KPESWR+ACQT V NK NSG
Sbjct: 409 NTELKYLXKKPESWRVACQTXVXNKXNSG 495
>TC87806 similar to GP|21592931|gb|AAM64881.1 phosphoserine
aminotransferase {Arabidopsis thaliana}, partial (58%)
Length = 1010
Score = 30.8 bits (68), Expect = 0.19
Identities = 16/52 (30%), Positives = 30/52 (56%)
Frame = +1
Query: 7 IFTPFPLTAGNRNPTIYFPRRRPNSVCLVANSPESPSPPPEIELEFVGPKPE 58
I +P P T + NP+ + P+ P++ ++N +S +PPP + + PKP+
Sbjct: 46 ISSPKPTTLSSTNPSPHSPQPSPSAPTPLSNPFQSNAPPPPTKPK-PSPKPK 198
>BQ141541 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, partial (2%)
Length = 1320
Score = 30.4 bits (67), Expect = 0.25
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Frame = -2
Query: 19 NPTIYFPRRR----------PNSVCLVANSPESPSPPPEIELEFVGPKP 57
NP+ + P R P S A SP SP PPP L+ GP P
Sbjct: 713 NPSAFLPAARGSYSPSSPPTPPSFSSRAPSPTSPLPPPPPPLQTAGPPP 567
>TC88542 similar to GP|17065530|gb|AAL32919.1 Unknown protein {Arabidopsis
thaliana}, complete
Length = 1004
Score = 29.6 bits (65), Expect = 0.42
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 26 RRRPNSVC--LVANSPESPSPPPEIELEF 52
R R ++C L++NSP PSPP I +EF
Sbjct: 19 RFRTQNICFILLSNSPPPPSPPVTISVEF 105
>TC85117 similar to GP|21593254|gb|AAM65203.1
S-adenosyl-L-methionine:salicylic acid carboxyl
methyltransferase-like protein, partial (29%)
Length = 557
Score = 28.5 bits (62), Expect = 0.94
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 22 IYFPRRRPNSVCLVANSPESPSPPPEIELEFVGPK 56
+ P P S A SP P PPP + L V K
Sbjct: 314 VLLPHEHPKSATTKALSPSPPPPPPSLTLSRVSLK 210
>BQ141682 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (8%)
Length = 938
Score = 28.1 bits (61), Expect = 1.2
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -3
Query: 15 AGNRNPTIYFPRRRPNSVCLVANS-----PESPSPPPEIELEFVGPKPEGDGSFPV 65
A +R+ IY RR S CL+ S P SPS I L ++GP P G G+ P+
Sbjct: 768 AYSRHHLIY---RRVTSACLLFASSLLCRPVSPSSRHLISL-YIGPHPHGLGNGPI 613
>TC93857 similar to SP|Q05049|MUC1_XENLA Integumentary mucin C.1 (FIM-C.1)
(Fragment). [African clawed frog] {Xenopus laevis},
partial (8%)
Length = 763
Score = 27.7 bits (60), Expect = 1.6
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +2
Query: 9 TPFPLTAGNRNPTIYFPRRRPNSVCLVANSPESPSPPPEIELEFVGPKPE 58
TP P T P+ +P+ N + P P P V PKP+
Sbjct: 296 TPKPKPNHTTTTTNVTPKPKPSHTTTTTNVTQKPKPNPTTTTTNVAPKPK 445
>TC90113 similar to PIR|C86301|C86301 arginine/serine-rich protein
[imported] - Arabidopsis thaliana, partial (70%)
Length = 1259
Score = 27.3 bits (59), Expect = 2.1
Identities = 17/73 (23%), Positives = 33/73 (44%)
Frame = +1
Query: 25 PRRRPNSVCLVANSPESPSPPPEIELEFVGPKPEGDGSFPVDKVKAISGEKLMRSIMSDN 84
P RR +S P PPP + P P PV + + EKL R++ +
Sbjct: 139 PPRRKSSAEPARRGRSPPLPPPP---QSKRPSPPPRKPSPVRESLVLHVEKLSRNVNEGH 309
Query: 85 KIDLYATYGKLMN 97
++++ +G++++
Sbjct: 310 LKEIFSNFGEVVS 348
>BG647590 similar to GP|22135988|gb putative protein {Arabidopsis thaliana},
partial (64%)
Length = 792
Score = 26.9 bits (58), Expect = 2.7
Identities = 24/91 (26%), Positives = 37/91 (40%)
Frame = -2
Query: 4 MNNIFTPFPLTAGNRNPTIYFPRRRPNSVCLVANSPESPSPPPEIELEFVGPKPEGDGSF 63
+NN+ PFP P + P R + P PPPE F PK
Sbjct: 533 LNNLHRPFPTKPSK--PFLDQPPTRHHH----------PPPPPEEAFSFFTPKSAPAFFA 390
Query: 64 PVDKVKAISGEKLMRSIMSDNKIDLYATYGK 94
+ ++ AIS + +I+S + + L A G+
Sbjct: 389 CIARILAISSFNFL-AILSSSSLPLAAESGE 300
>BF641241 homologue to GP|14279070|dbj tRNA isopentenyltransferase
{Arabidopsis thaliana}, partial (10%)
Length = 663
Score = 26.9 bits (58), Expect = 2.7
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = -1
Query: 93 GKLMNCGGGGSCGTCIV 109
GKL GGGG+CG C++
Sbjct: 444 GKLDVPGGGGTCGDCVL 394
>TC78318 similar to PIR|T45852|T45852 hypothetical protein F3A4.70 -
Arabidopsis thaliana, partial (48%)
Length = 1923
Score = 26.9 bits (58), Expect = 2.7
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = -3
Query: 93 GKLMNCGGGGSCGTCIVEKPESWR 116
G L+ CGGGG C C + + W+
Sbjct: 70 GGLIGCGGGGGC--CCPRRRKDWK 5
>TC93648 similar to GP|14279070|dbj|BAB59048. tRNA isopentenyltransferase
{Arabidopsis thaliana}, partial (16%)
Length = 581
Score = 26.9 bits (58), Expect = 2.7
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = -3
Query: 93 GKLMNCGGGGSCGTCIV 109
GKL GGGG+CG C++
Sbjct: 276 GKLDVPGGGGTCGDCVL 226
>TC77351 homologue to GP|10175808|dbj|BAB06904. BH3185~unknown {Bacillus
halodurans}, partial (33%)
Length = 773
Score = 26.9 bits (58), Expect = 2.7
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 10/41 (24%)
Frame = -3
Query: 96 MNCGGGGSCG---------TCIV-EKPESWRLACQTIVGNK 126
MN GG C TC++ +KPE W AC NK
Sbjct: 369 MNVAGGRECHANSHCVGKITCVLPQKPECWNYACVCYDSNK 247
>TC82669
Length = 730
Score = 26.6 bits (57), Expect = 3.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 26 RRRPNSVCLVANSPESPSPPPEIEL 50
+R N+VC + N S SPPP +L
Sbjct: 133 KRTTNTVC*ILNLESSSSPPPNSKL 207
>TC86804 similar to GP|5725342|emb|CAA63650.1 ribosomal protein S5 {Spinacia
oleracea}, partial (75%)
Length = 1353
Score = 26.6 bits (57), Expect = 3.6
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Frame = -1
Query: 17 NRNPTIYFPRRRPNSVCLVANSPESPSP-----------PPEIELEFVGP 55
+RN + FP NS L+ N+ SP P PP + F P
Sbjct: 705 SRNNFLSFPNTNTNSSLLITNNNNSPKPHLFPSFNNLSNPPNLNNSFFQP 556
>BQ136037 similar to GP|21322711|em pherophorin-dz1 protein {Volvox carteri
f. nagariensis}, partial (5%)
Length = 712
Score = 26.6 bits (57), Expect = 3.6
Identities = 11/23 (47%), Positives = 13/23 (55%)
Frame = +3
Query: 35 VANSPESPSPPPEIELEFVGPKP 57
+A SP P PPP I F+ P P
Sbjct: 324 LATSPPPPPPPPSIFFFFLPPPP 392
>TC80199 weakly similar to GP|21593112|gb|AAM65061.1 unknown {Arabidopsis
thaliana}, partial (41%)
Length = 934
Score = 26.2 bits (56), Expect = 4.7
Identities = 15/52 (28%), Positives = 23/52 (43%)
Frame = +2
Query: 7 IFTPFPLTAGNRNPTIYFPRRRPNSVCLVANSPESPSPPPEIELEFVGPKPE 58
I++P P+ + P I +P + P SPSPPP + P P+
Sbjct: 203 IYSPPPIIYNSPPPPIVYP----------SPPPPSPSPPPIVYYSPPPPSPK 328
>TC84278 similar to PIR|T02567|T02567 probable ATP-binding cassette protein
T16B24.1 - Arabidopsis thaliana, partial (28%)
Length = 835
Score = 26.2 bits (56), Expect = 4.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 41 SPSPPPEIELEFVGPKPEGDG--SFPVDKVKAISG 73
SPS P EF P PEGD F +D ++ + G
Sbjct: 420 SPSQLPSYFAEFGHPIPEGDNRTEFALDLIRELEG 524
>BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (24%)
Length = 1059
Score = 26.2 bits (56), Expect = 4.7
Identities = 14/43 (32%), Positives = 17/43 (38%)
Frame = -1
Query: 20 PTIYFPRRRPNSVCLVANSPESPSPPPEIELEFVGPKPEGDGS 62
P + PR P S P +PSPPP + P P S
Sbjct: 501 PYLSTPRPPPPSPHFSPPPPPAPSPPPPLSRHPAHPNPRSPTS 373
>BQ144022 homologue to GP|22831315|dbj hypothetical protein~predicted by
GlimmerM etc. {Oryza sativa (japonica cultivar-group)},
partial (16%)
Length = 1286
Score = 23.1 bits (48), Expect(2) = 5.1
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = -3
Query: 9 TPFPLTAGNRNPTIYFPRRRPNSVCLVANSPESPSPPP 46
+P L+ + P YF +S+ SP SPSPPP
Sbjct: 609 SPPALSVYSGGPPFYFF----SSLFPALPSPPSPSPPP 508
Score = 21.2 bits (43), Expect(2) = 5.1
Identities = 9/26 (34%), Positives = 11/26 (41%)
Frame = -3
Query: 38 SPESPSPPPEIELEFVGPKPEGDGSF 63
SP P PPP + GP +F
Sbjct: 519 SPPPPPPPPSPAVGHFGPATPPPSAF 442
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,406,099
Number of Sequences: 36976
Number of extensions: 89924
Number of successful extensions: 835
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of query: 142
length of database: 9,014,727
effective HSP length: 87
effective length of query: 55
effective length of database: 5,797,815
effective search space: 318879825
effective search space used: 318879825
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC146722.13