
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146721.5 - phase: 0 /pseudo
(59 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC85658 homologue to PIR|S57786|S57786 phosphogluconate dehydrog... 67 1e-12
TC85656 homologue to PIR|S57786|S57786 phosphogluconate dehydrog... 67 1e-12
TC82255 similar to GP|6692095|gb|AAF24560.1| F22C12.5 {Arabidops... 53 3e-08
BQ751449 similar to GP|21954534|db 6-phosphogluconate dehydrogen... 41 1e-04
>TC85658 homologue to PIR|S57786|S57786 phosphogluconate dehydrogenase
(decarboxylating) (EC 1.1.1.44) - alfalfa, partial (22%)
Length = 423
Score = 67.4 bits (163), Expect = 1e-12
Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 10/63 (15%)
Frame = +1
Query: 7 TNLARIGLAVIGQNLALNIAEKGFQFQF----------TIERAKQEGNLPIYGYHDFKYF 56
T + GLAV+GQNLALNIA+KGF T+ERAKQEGNLP+YG+HD + F
Sbjct: 115 TRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPEAF 294
Query: 57 VQS 59
V S
Sbjct: 295 VNS 303
>TC85656 homologue to PIR|S57786|S57786 phosphogluconate dehydrogenase
(decarboxylating) (EC 1.1.1.44) - alfalfa, complete
Length = 1811
Score = 67.4 bits (163), Expect = 1e-12
Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 10/63 (15%)
Frame = +3
Query: 7 TNLARIGLAVIGQNLALNIAEKGFQFQF----------TIERAKQEGNLPIYGYHDFKYF 56
T + GLAV+GQNLALNIA+KGF T+ERAKQEGNLP+YG+HD + F
Sbjct: 129 TRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPEAF 308
Query: 57 VQS 59
V S
Sbjct: 309 VNS 317
>TC82255 similar to GP|6692095|gb|AAF24560.1| F22C12.5 {Arabidopsis
thaliana}, partial (50%)
Length = 836
Score = 52.8 bits (125), Expect = 3e-08
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 13/71 (18%)
Frame = +2
Query: 2 ATSEPTNLARIGLA---VIGQNLALNIAEKGFQFQF----------TIERAKQEGNLPIY 48
+T + + L+RIGLA V+GQNLALNIAEKGF T++RA +EG+LP+
Sbjct: 71 STMDASTLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVDRAHREGSLPLT 250
Query: 49 GYHDFKYFVQS 59
G + + FV S
Sbjct: 251 GQYSPREFVLS 283
>BQ751449 similar to GP|21954534|db 6-phosphogluconate dehydrogenase
{Aspergillus oryzae}, partial (37%)
Length = 595
Score = 40.8 bits (94), Expect = 1e-04
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +3
Query: 8 NLARIGLAVIGQNLALNIAEKGF---QFQFTIER-----AKQEGNLPIYGYHDFKYFV 57
++ IGLAV+GQN+ LN A+KGF F T+ + A + LPI G H + FV
Sbjct: 48 DMGLIGLAVMGQNIILNAADKGFTIAAFNRTVSKVDRFLANEAKGLPIVGAHSIEEFV 221
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,360,730
Number of Sequences: 36976
Number of extensions: 10257
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of query: 59
length of database: 9,014,727
effective HSP length: 35
effective length of query: 24
effective length of database: 7,720,567
effective search space: 185293608
effective search space used: 185293608
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC146721.5