Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146721.5 - phase: 0 /pseudo
         (59 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85658 homologue to PIR|S57786|S57786 phosphogluconate dehydrog...    67  1e-12
TC85656 homologue to PIR|S57786|S57786 phosphogluconate dehydrog...    67  1e-12
TC82255 similar to GP|6692095|gb|AAF24560.1| F22C12.5 {Arabidops...    53  3e-08
BQ751449 similar to GP|21954534|db 6-phosphogluconate dehydrogen...    41  1e-04

>TC85658 homologue to PIR|S57786|S57786 phosphogluconate dehydrogenase
           (decarboxylating) (EC 1.1.1.44) - alfalfa, partial (22%)
          Length = 423

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 10/63 (15%)
 Frame = +1

Query: 7   TNLARIGLAVIGQNLALNIAEKGFQFQF----------TIERAKQEGNLPIYGYHDFKYF 56
           T +   GLAV+GQNLALNIA+KGF              T+ERAKQEGNLP+YG+HD + F
Sbjct: 115 TRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPEAF 294

Query: 57  VQS 59
           V S
Sbjct: 295 VNS 303


>TC85656 homologue to PIR|S57786|S57786 phosphogluconate dehydrogenase
           (decarboxylating) (EC 1.1.1.44) - alfalfa, complete
          Length = 1811

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 10/63 (15%)
 Frame = +3

Query: 7   TNLARIGLAVIGQNLALNIAEKGFQFQF----------TIERAKQEGNLPIYGYHDFKYF 56
           T +   GLAV+GQNLALNIA+KGF              T+ERAKQEGNLP+YG+HD + F
Sbjct: 129 TRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPEAF 308

Query: 57  VQS 59
           V S
Sbjct: 309 VNS 317


>TC82255 similar to GP|6692095|gb|AAF24560.1| F22C12.5 {Arabidopsis
           thaliana}, partial (50%)
          Length = 836

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 13/71 (18%)
 Frame = +2

Query: 2   ATSEPTNLARIGLA---VIGQNLALNIAEKGFQFQF----------TIERAKQEGNLPIY 48
           +T + + L+RIGLA   V+GQNLALNIAEKGF              T++RA +EG+LP+ 
Sbjct: 71  STMDASTLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVDRAHREGSLPLT 250

Query: 49  GYHDFKYFVQS 59
           G +  + FV S
Sbjct: 251 GQYSPREFVLS 283


>BQ751449 similar to GP|21954534|db 6-phosphogluconate dehydrogenase
           {Aspergillus oryzae}, partial (37%)
          Length = 595

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
 Frame = +3

Query: 8   NLARIGLAVIGQNLALNIAEKGF---QFQFTIER-----AKQEGNLPIYGYHDFKYFV 57
           ++  IGLAV+GQN+ LN A+KGF    F  T+ +     A +   LPI G H  + FV
Sbjct: 48  DMGLIGLAVMGQNIILNAADKGFTIAAFNRTVSKVDRFLANEAKGLPIVGAHSIEEFV 221


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.321    0.138    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,360,730
Number of Sequences: 36976
Number of extensions: 10257
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of query: 59
length of database: 9,014,727
effective HSP length: 35
effective length of query: 24
effective length of database: 7,720,567
effective search space: 185293608
effective search space used: 185293608
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)


Medicago: description of AC146721.5