BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146720.2 - phase: 0
(1333 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 213 3e-55
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 159 5e-39
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 156 4e-38
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 127 5e-37
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 140 4e-33
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 137 4e-32
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 131 2e-30
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 129 8e-30
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 119 8e-27
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 103 3e-22
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 103 3e-22
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 64 3e-21
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 98 2e-20
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 70 7e-17
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 86 1e-16
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 73 6e-13
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 72 2e-12
BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F... 57 3e-12
BI272602 GP|11602812|db avenaIII {Gallus gallus}, partial (3%) 70 4e-12
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 67 5e-11
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 213 bits (543), Expect = 3e-55
Identities = 113/232 (48%), Positives = 141/232 (60%), Gaps = 1/232 (0%)
Frame = +1
Query: 821 TRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINA-LQDHNWKMAMKDEYDALIDNKTWDL 879
TR + G KP+ L P P + N L D W AMK EY ALIDNKTWDL
Sbjct: 4 TRTKTGKLKPKVFLT---------EPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDL 156
Query: 880 VPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIR 939
VP P + I W++R K+ DGS ++KARLV G +Q G D ETFSPV+KP TIR
Sbjct: 157 VPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIR 336
Query: 940 TVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQ 999
+L+IA++ W + Q+D+ NAFL+G L E VYM QP GF + + VC L KSLYGLKQ
Sbjct: 337 LILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQPQGF-EAANKSLVCKLNKSLYGLKQ 513
Query: 1000 APRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASS 1051
APRAWY+ T GF+ S CD SL IY+ Y+ +YVDDI++T SS
Sbjct: 514 APRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSS 669
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 159 bits (403), Expect = 5e-39
Identities = 89/240 (37%), Positives = 125/240 (52%), Gaps = 29/240 (12%)
Frame = +2
Query: 987 VCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDII 1046
VC L+KS+YGLKQA R WY + ++ + + G+ S D SLF +L+YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1047 LTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD------------------- 1087
L + + Q + L F +KDLG L YFLG+ V R
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1088 ----------DTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHD 1137
D KL + Y+D ++YR L G L YLT TRPDIS+AVQQ+ F+
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1138 PKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLG 1197
P+ H A R+++Y+K GL ++ KL+++ D+DW CP TRKS +GY V+LG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 156 bits (395), Expect = 4e-38
Identities = 84/181 (46%), Positives = 105/181 (57%)
Frame = -1
Query: 847 LPTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFE 906
+P + A++D WK ++ E A+I N TW P + S WIF K KADGS E
Sbjct: 561 IPRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIE 382
Query: 907 RYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNL 966
R K RLV G G D ETF+PV K TIR VLS+A++ W L Q+DVKNAFL G L
Sbjct: 381 RKKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGEL 202
Query: 967 NETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSL 1026
+ VYMY PPG V LKK++YGLKQ+PRAWY + + + GF S DH+L
Sbjct: 201 EDEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTL 22
Query: 1027 F 1027
F
Sbjct: 21 F 19
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 127 bits (320), Expect(2) = 5e-37
Identities = 62/139 (44%), Positives = 92/139 (65%)
Frame = -2
Query: 907 RYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNL 966
R K++LV G NQ+ G+D E FSPV + IR +++ A + L+Q+DVK+AF++G+L
Sbjct: 418 RNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFINGDL 239
Query: 967 NETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSL 1026
E V++ QPPGF D + P++V L K+LYGLKQAPRAWY+R + ++ GF D++L
Sbjct: 238 KEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDNTL 59
Query: 1027 FIYHSGDDTAYILLYVDDI 1045
F+ + I +YVDDI
Sbjct: 58 FLLKRE*ELLIIQVYVDDI 2
Score = 46.6 bits (109), Expect(2) = 5e-37
Identities = 24/64 (37%), Positives = 36/64 (55%)
Frame = -3
Query: 835 NLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWI 894
NL + S+ S P N AL+D +W +M++E +K W LVPRP +I + W+
Sbjct: 624 NLVSFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWV 445
Query: 895 FRHK 898
FR+K
Sbjct: 444 FRNK 433
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 140 bits (352), Expect = 4e-33
Identities = 84/242 (34%), Positives = 125/242 (50%), Gaps = 4/242 (1%)
Frame = +3
Query: 848 PTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFER 907
PT A++ W+ +M +E +A N TW+L S A I WIF+ K +G E+
Sbjct: 42 PTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIEK 221
Query: 908 YKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALS---KSWCLHQLDVKNAFLHG 964
YKARLV G +QQ GVD E F+PV + TIR V+++A C+ + ++ +
Sbjct: 222 YKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCMEN 401
Query: 965 NLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDH 1024
+ + + + R +K++LYGLKQAPRAWY R Y GF +H
Sbjct: 402 *MRKFLLI----NHRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCPYEH 569
Query: 1025 SLFIYHS-GDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVT 1083
+LF+ S G I LYVDD+I + + + + + EF M DLG + YFLG+ VT
Sbjct: 570 TLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGVEVT 749
Query: 1084 RH 1085
++
Sbjct: 750 QN 755
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 137 bits (344), Expect = 4e-32
Identities = 69/187 (36%), Positives = 107/187 (56%)
Frame = +1
Query: 1081 SVTRHSDDTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKT 1140
+++R+ + KL D ++Y+ + G L YL TRPD+ Y + + FM+ P
Sbjct: 91 NLSRNPIAPRCKLIKDENGVKVDATKYKQIVGCLMYLAATRPDLMYVLSLISRFMNCPTE 270
Query: 1141 QHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNL 1200
HM A+KR++RY+ GT G+ + +KL YTD+D+ G D RKSTSGY L
Sbjct: 271 LHMHAVKRVLRYLNGTINLGIMYKRNGSEKLEAYTDSDYAGDLDDRKSTSGYVFMLSSGA 450
Query: 1201 VSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYL 1260
VSWS+K+QP ++ S+ +AE+ A +S W+R +L +L + + +YCDN S + L
Sbjct: 451 VSWSSKKQPVVTLSTTKAEFIAAAFCACQSVWMRRVLEKLGYTQSGSITMYCDNNSTIKL 630
Query: 1261 SGNPIQH 1267
S NP+ H
Sbjct: 631 SKNPVLH 651
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 131 bits (329), Expect = 2e-30
Identities = 80/249 (32%), Positives = 128/249 (51%), Gaps = 5/249 (2%)
Frame = +1
Query: 466 GKQIKLPFYESLSSTLLPFDIVHSDIW-TSPILSSGGHHYYILFLDDFTDFLWTFPLTNK 524
G + K+ F + T D +HSD+W S + S GG Y + +DDF +W + L K
Sbjct: 43 GNRKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYK 222
Query: 525 SQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQN 584
++ F ++ ++TQ +++K DN E+ +S F++FC +G+ + P QN
Sbjct: 223 NETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQN 402
Query: 585 GKVERKIRTINNIIRTLLAHASL--PPSFWHHALQMATYLLNILPTKKLALQTPTTILYQ 642
G ER IRT+ R +L++A L W A A +L+N P L + P I
Sbjct: 403 GVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSG 582
Query: 643 KSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYK--CFELSSRKIII 700
YS+L++FGC + L+ KL R+ C+FL Y S +GY+ C + S+K+I+
Sbjct: 583 NLVDYSNLRIFGCPAYALV---NDGKLAPRAGECIFLSYASESKGYRLWCSDPKSQKLIL 753
Query: 701 SRHVIFDEN 709
SR V F+E+
Sbjct: 754 SRDVTFNED 780
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 129 bits (324), Expect = 8e-30
Identities = 60/137 (43%), Positives = 90/137 (64%)
Frame = +2
Query: 1177 ADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNL 1236
+DW G +TRKSTSGY +LG +SWS+K+QP ++ S+AEAEY + +++ WLR +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1237 LLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPS 1296
L + T +YCDN SA+ LS NP+ H R+KHI++ H +RE +A +V + + P+
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1297 RYQIADIFTKGLPLQLF 1313
+IADIFTK L ++ F
Sbjct: 362 EEKIADIFTKPLKIESF 412
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 119 bits (298), Expect = 8e-27
Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 3/239 (1%)
Frame = -3
Query: 399 SSGDLYPLATRP---YYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFR 455
+ GDLY L Y + S+ + + +WH RLGHP LN + L
Sbjct: 677 TKGDLYMLEKLDPVSNYKCSFTSSSSLNKDALWHARLGHPHGRALNLM------LPGVVF 516
Query: 456 NNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDF 515
N C++C LGK K F + + FD++++D+WT+P LS H Y++ F+D+ + +
Sbjct: 515 ENKNCEACILGKHCKNVFPRTSTVYENCFDLIYTDLWTAPSLSRDNHKYFVTFIDEKSKY 336
Query: 516 LWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRF 575
W + +K + F F ++ + IK + DNG EY + F +G++ +
Sbjct: 335 TWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLDHHGILHQT 156
Query: 576 SCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQ 634
SCP+T QNG +RK + + + R+L+ A+ + A YL+N +PTK L ++
Sbjct: 155 SCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---------VSTACYLINWIPTKVLRIK 6
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 103 bits (258), Expect = 3e-22
Identities = 55/128 (42%), Positives = 77/128 (59%), Gaps = 4/128 (3%)
Frame = +1
Query: 1121 RPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYP----STVDKLTTYTD 1176
RPDI Y+V + FMHDP+ H+ A RI+RY++GT +GL L+P S V +L Y+D
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGL-LFPYGAKSEVYELICYSD 297
Query: 1177 ADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNL 1236
+DW G R+STSGY D +SW K+QP + SS EAEY ++ WL ++
Sbjct: 298 SDWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSV 468
Query: 1237 LLELQCPV 1244
+ EL+C V
Sbjct: 469 IKELKCEV 492
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 103 bits (258), Expect = 3e-22
Identities = 54/164 (32%), Positives = 93/164 (55%), Gaps = 2/164 (1%)
Frame = +1
Query: 1145 ALKRIIRYIKGTSTHGLHLYPSTV--DKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVS 1202
ALK +++Y+ + L + D L Y DAD+ G DTRKS SG+ L +S
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1203 WSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSG 1262
W A +Q ++ S+ +AEY V ++ WL+ ++ EL + ++CD+ SA++L+
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGI-TQEYVKIHCDSQSAIHLAN 360
Query: 1263 NPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTK 1306
+ + H+RTKHI++ +HF+R+ + ++ V + S AD+FTK
Sbjct: 361 HQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 63.9 bits (154), Expect(2) = 3e-21
Identities = 33/85 (38%), Positives = 49/85 (56%)
Frame = +3
Query: 1229 ESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQ 1288
E+ W++ L+ EL + T VYCD+ SA++++ NP H RTKHI + HFVRE V G
Sbjct: 249 EAIWMQRLMEELGHKQEQIT-VYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGS 425
Query: 1289 VRVMHVPSRYQIADIFTKGLPLQLF 1313
V + + + +AD TK + F
Sbjct: 426 VDMQKIHTNDNLADAMTKSINTDKF 500
Score = 57.8 bits (138), Expect(2) = 3e-21
Identities = 33/75 (44%), Positives = 45/75 (60%)
Frame = +1
Query: 1146 LKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSA 1205
+KRI+RYIKGTS + S + + Y D+D+ G D RKST+GY L VSW +
Sbjct: 1 VKRIMRYIKGTSGVAVCFGGSELT-VRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1206 KRQPTLSRSSAEAEY 1220
K Q ++ S+ EAEY
Sbjct: 178 KLQTVVALSTTEAEY 222
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 97.8 bits (242), Expect = 2e-20
Identities = 42/99 (42%), Positives = 66/99 (66%)
Frame = -2
Query: 619 ATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVF 678
A YL+N +PT+ L Q P +L Q+ PS ++++VFGCLC+ L+P RNKL+ARS +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 679 LGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNSN 717
+GY + +GYKC++ +R++++SR V F E + N
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKN 408
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 70.5 bits (171), Expect(2) = 7e-17
Identities = 37/87 (42%), Positives = 50/87 (56%), Gaps = 1/87 (1%)
Frame = +1
Query: 999 QAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGD-DTAYILLYVDDIILTASSDTLRQS 1057
Q+PR W+ RFT V G+ DH++FI HS A +++YVDDI LT +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 1058 IMSKLNSEFAMKDLGPLSYFLGISVTR 1084
+ + L EF +KDLG L YFLG+ V R
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVAR 261
Score = 36.2 bits (82), Expect(2) = 7e-17
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +2
Query: 1088 DTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFM 1135
D KL D Y+ L G L YL+ TRPDIS+ V + FM
Sbjct: 359 DATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 85.5 bits (210), Expect = 1e-16
Identities = 44/114 (38%), Positives = 62/114 (53%)
Frame = +1
Query: 579 HTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTT 638
HT QNG ER RT+ R +L A + SFW A++ A Y++N P+ + L+TP
Sbjct: 82 HTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPME 261
Query: 639 ILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFE 692
+ K YS L VFGC + + S R KL +S C+FLGY N +GY ++
Sbjct: 262 MWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 73.2 bits (178), Expect = 6e-13
Identities = 37/91 (40%), Positives = 57/91 (61%)
Frame = +2
Query: 875 KTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVK 934
+T LV +P+ I WI++ K+ DG+ +YKARLV G +Q G+D E F+PVV+
Sbjct: 53 QTLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVR 232
Query: 935 PATIRTVLSIALSKSWCLHQLDVKNAFLHGN 965
TI +L++A + +H +DVK AFL+G+
Sbjct: 233 IETI*LLLALAATNGC*IHHIDVKIAFLNGH 325
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 71.6 bits (174), Expect = 2e-12
Identities = 32/66 (48%), Positives = 48/66 (72%)
Frame = +2
Query: 1243 PVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIAD 1302
P++++ L+ CD +SA YL+ NP+ H R KHI +DIHFVR+ V +G+++V HV + Q+AD
Sbjct: 2 PISQSGLLRCDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLAD 181
Query: 1303 IFTKGL 1308
TK L
Sbjct: 182 CLTKPL 199
>BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (5%)
Length = 721
Score = 56.6 bits (135), Expect(2) = 3e-12
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = -3
Query: 1220 YRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAV-YLSGNPIQHQRTKHIEMDIH 1278
YR + + + E WL LL +L+ K ++YCDN SA +++ N +RTKHIE+D H
Sbjct: 374 YRSI*STICEIKWLTYLLNDLKFTFIKPAMLYCDNQSAARHIAANSSFLERTKHIELDCH 195
Query: 1279 FVREKVARGQVRVMHVPS 1296
VR K+ ++H+ S
Sbjct: 194 IVRVKLQLKLFHILHILS 141
Score = 34.3 bits (77), Expect(2) = 3e-12
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 1178 DWGGCPDTRKSTSGYCVYLGDNLVSWSA 1205
D C DT KS S +C++LGD+L+ W +
Sbjct: 486 D*SSCLDT*KSISYFCIFLGDSLICWKS 403
>BI272602 GP|11602812|db avenaIII {Gallus gallus}, partial (3%)
Length = 488
Score = 70.5 bits (171), Expect = 4e-12
Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Frame = +1
Query: 761 ATPLTTPYSINTT-THQPTVAPSPQIQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQ- 818
+T ++P S N+ Q SP TS +L + +P PPP P A P +
Sbjct: 7 STQTSSPSSPNSNEVAQNIQISSPASPTSNELANITTSPTP---PPPPPPTARPHNNHTT 177
Query: 819 ----MTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDALIDN 874
+ TR+Q+ I K + LNLH I P +N AL+DH+W+ M+DE+DAL +N
Sbjct: 178 NVGGIITRSQNNIVKTIKKLNLHVRPLCPIEP--SNITQALRDHDWRSIMQDEFDALQNN 351
Query: 875 KTWDLVPRPSNANIIRSLWIFRHKKKA 901
TWDLV R N++ F ++ K+
Sbjct: 352 NTWDLVSRSFAQNLVGCKLGFSYQTKS 432
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse transcriptase
homolog - rape retrotransposon copia-like (fragment),
partial (84%)
Length = 249
Score = 67.0 bits (162), Expect = 5e-11
Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Frame = -1
Query: 966 LNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDY---VATLGFSHSVC 1022
L E +YM QP GF P D+VC L+KSLYGLKQ+PR WY+RF Y AT G +V
Sbjct: 246 LEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSYRSSWATTGVLMTVV 67
Query: 1023 D------HSLFIYHSGDDTAYILLYVDDII 1046
S +I Y++LYVDD++
Sbjct: 66 ST*TR*RMSRYI--------YLVLYVDDML 1
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,292,326
Number of Sequences: 36976
Number of extensions: 894800
Number of successful extensions: 9221
Number of sequences better than 10.0: 419
Number of HSP's better than 10.0 without gapping: 6901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8287
length of query: 1333
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1225
effective length of database: 5,021,319
effective search space: 6151115775
effective search space used: 6151115775
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Medicago: description of AC146720.2