TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146712.3 - phase: 0 /pseudo
         (276 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644741                                                               45  4e-05
AL366605                                                               40  0.001
BG580885                                                               35  0.024
BE999414                                                               33  0.091
TC82735 weakly similar to GP|6686408|gb|AAF23842.1| F1E22.7 {Ara...    28  2.9
TC79063 similar to GP|15215854|gb|AAK91471.1 At2g43170/F14B2.11 ...    28  2.9
BF004325 weakly similar to GP|11994465|dbj contains similarity t...    27  6.5
TC91305 similar to GP|6175169|gb|AAF04895.1| unknown protein {Ar...    27  8.5

>BG644741 
          Length = 735

 Score = 44.7 bits (104), Expect = 4e-05
 Identities = 33/109 (30%), Positives = 46/109 (41%), Gaps = 1/109 (0%)
 Frame = -2

Query: 77  LHLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMG- 135
           L +FP SL   A  WF  L   SI +W+ +R  FLAR+ P  K LN   + +  +   G 
Sbjct: 587 LRVFPLSLMGEADIWFTELPYNSIFTWNQLRDVFLARYYPVSKKLNHNDRVNNFVALPGE 408

Query: 136 SLSMKRGRVSRKSLDFVPTMAWKSGL*STPFNGLSYTTKMSVDAAAGGS 184
           S+S    R +               L    + G     K+ +D  AGGS
Sbjct: 407 SVSSSWDRFTSFLRSVPNHRIDDDSLKEYFYRGQDDNNKVVLDTIAGGS 261


>AL366605 
          Length = 422

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 23/69 (33%), Positives = 36/69 (51%), Gaps = 2/69 (2%)
 Frame = -3

Query: 54  PNLHISSFLRLSGTIKENQEAV*LHLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLAR 113
           P  HI  ++R  G  K+N   + +H F  SL + A+ W+ SL    I ++D +  AF + 
Sbjct: 291 PQNHIIKYVRKMGNYKDNDSLM-IHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSH 115

Query: 114 --FSPHLKP 120
             F+  LKP
Sbjct: 114 YGFNTRLKP 88


>BG580885 
          Length = 609

 Score = 35.4 bits (80), Expect = 0.024
 Identities = 19/71 (26%), Positives = 38/71 (52%), Gaps = 2/71 (2%)
 Frame = +3

Query: 46  FSGSPTEDPNLHISSFLRLSGTIKENQEAV*LHLFPFSLRDRASAWFH-SLEVGSIT-SW 103
           F G+P E P  H+S F ++      +   +   +FP +L + ++ W+  ++E   I+ SW
Sbjct: 54  FRGTPNESPITHLSRFNKVCRANNASSVEMQKKIFPVTLEEESALWYDLNIEPYYISLSW 233

Query: 104 DGMRRAFLARF 114
           D ++ +FL  +
Sbjct: 234 DEIKLSFLQAY 266


>BE999414 
          Length = 613

 Score = 33.5 bits (75), Expect = 0.091
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +3

Query: 42  QQNQFSGSPTEDPNLHISSFLRLSGTIKENQEAV*LHLFPFSLRDRASAWFHSLEVGSIT 101
           Q + + G  T DP+ H+ + + +  T +  + AV   LF  +LR  A  WF +L   SI 
Sbjct: 6   QMDSYDG--T*DPDEHMEN-IEVVLTYRSVRGAVKCKLFVTTLRRGAMTWFKNLRRNSIG 176

Query: 102 SWDGMRRAFLARFS 115
           SW  +   F   F+
Sbjct: 177 SWGDLCHEFTTHFT 218


>TC82735 weakly similar to GP|6686408|gb|AAF23842.1| F1E22.7 {Arabidopsis
           thaliana}, partial (74%)
          Length = 965

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 10/22 (45%), Positives = 17/22 (76%)
 Frame = -3

Query: 243 KNSKNLMLMLSHLLLHPLLVKS 264
           KNS +L  ++ HL+LHP ++K+
Sbjct: 960 KNSMHLKGLIEHLILHPFIIKN 895


>TC79063 similar to GP|15215854|gb|AAK91471.1 At2g43170/F14B2.11 {Arabidopsis
            thaliana}, partial (34%)
          Length = 1726

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 229  LNITTLLLRLKL*PKNSKNLMLMLSHLLLHPLL 261
            L +  LLL L L P+    LM+ L+H++LH LL
Sbjct: 1244 LPVHLLLLVLLLLPRKLSPLMISLTHVVLHQLL 1342


>BF004325 weakly similar to GP|11994465|dbj contains similarity to late
           embryogenesis abundant protein~gene_id:MLD14.16
           {Arabidopsis thaliana}, partial (8%)
          Length = 357

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 15/49 (30%), Positives = 29/49 (58%)
 Frame = +2

Query: 214 PLLLPLRKRQVYTKSLNITTLLLRLKL*PKNSKNLMLMLSHLLLHPLLV 262
           PL+  L++  +  K   I   LLR+  *PKN++  ++M+S  ++  L++
Sbjct: 170 PLVGKLQQTTLLLKLKEIVR*LLRVSQ*PKNTRGFIIMVSPKMIVVLIL 316


>TC91305 similar to GP|6175169|gb|AAF04895.1| unknown protein {Arabidopsis
           thaliana}, partial (34%)
          Length = 674

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 13  SMEEPQAIIVYPTVEGNNFEI 33
           ++EE   +I Y TVEGNNF +
Sbjct: 107 AVEEDGRLIKYGTVEGNNFHV 45


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.325    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,255,229
Number of Sequences: 36976
Number of extensions: 114564
Number of successful extensions: 753
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of query: 276
length of database: 9,014,727
effective HSP length: 95
effective length of query: 181
effective length of database: 5,502,007
effective search space: 995863267
effective search space used: 995863267
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)