TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146711.3 - phase: 0 
         (61 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2...    52  5e-08
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate...    47  1e-06
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr...    45  4e-06
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen...    43  3e-05
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu...    36  0.003
CA989471 similar to GP|11994367|dbj gb|AAF17567.1~gene_id:MDC16....    25  6.0

>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
           Arabidopsis thaliana, partial (11%)
          Length = 732

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 25/49 (51%), Positives = 32/49 (65%)
 Frame = +1

Query: 12  DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAA 60
           D+DYAGD  +RKSTSG    L      WS +KQ  + LSTT+AE+ +AA
Sbjct: 376 DSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAA 522


>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
           polyprotein from transposon TNT 1-94 [Contains: Protease
           (EC 3.4.23.-);, partial (7%)
          Length = 705

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 23/49 (46%), Positives = 31/49 (62%)
 Frame = +1

Query: 11  LDADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESA 59
           +D+D+AGD  +RKST+G    L      W  + Q  +ALSTTEAEY +A
Sbjct: 85  VDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAA 231


>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein
          {Oryza sativa}, partial (9%)
          Length = 542

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 23/49 (46%), Positives = 29/49 (58%)
 Frame = +2

Query: 13 ADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
          +D+AGD   RKSTSG    L      WS +KQ  +A ST EAEY ++ S
Sbjct: 2  SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTS 148


>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (10%)
          Length = 814

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 21/46 (45%), Positives = 27/46 (58%)
 Frame = +1

Query: 11  LDADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEY 56
           +DADYAG+   RKS SG    L      W   +Q+ + LSTT+AEY
Sbjct: 100 VDADYAGNVDTRKSLSGFVFTLYGTTISWKANQQSVVTLSTTQAEY 237


>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
           partial (13%)
          Length = 494

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +1

Query: 12  DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEY 56
           D+D+ GD   R+STSG       A   W  +KQ   ALS+ EAEY
Sbjct: 295 DSDWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEY 420


>CA989471 similar to GP|11994367|dbj gb|AAF17567.1~gene_id:MDC16.8~similar to
           unknown protein {Arabidopsis thaliana}, partial (7%)
          Length = 652

 Score = 25.0 bits (53), Expect = 6.0
 Identities = 13/42 (30%), Positives = 20/42 (46%)
 Frame = -3

Query: 8   CSLLDADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIAL 49
           CSL+      D++  + +   C  L   LT   C KQN++ L
Sbjct: 527 CSLVSTHQRNDEVVSELSHFLCPCLLFLLT*CQCLKQNSVVL 402


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.332    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,746,436
Number of Sequences: 36976
Number of extensions: 16436
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of query: 61
length of database: 9,014,727
effective HSP length: 37
effective length of query: 24
effective length of database: 7,646,615
effective search space: 183518760
effective search space used: 183518760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (24.3 bits)