BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146705.10 - phase: 0
(146 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC77756 similar to PIR|T06796|T06796 glycine-rich RNA-binding pr... 301 6e-83
BE124733 similar to PIR|T06796|T06 glycine-rich RNA-binding prot... 283 2e-77
TC93504 weakly similar to PIR|S46286|S46286 RNA-binding protein ... 120 2e-37
TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr... 131 8e-32
TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-bi... 131 1e-31
AL374421 similar to PIR|S59529|S59 RNA-binding glycine-rich prot... 112 4e-26
AL371197 homologue to GP|6273331|gb| glycine-rich RNA binding pr... 112 4e-26
TC76561 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr... 102 5e-23
TC76557 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr... 102 7e-23
CA859237 weakly similar to PIR|T45886|T458 RNA-binding protein c... 93 4e-20
AL388260 weakly similar to SP|Q08937|ROC2_ 29 kDa ribonucleoprot... 91 1e-19
TC86535 similar to GP|9758076|dbj|BAB08520.1 contains similarity... 91 2e-19
TC89523 weakly similar to GP|17065276|gb|AAL32792.1 Unknown prot... 84 3e-17
TC76790 similar to PIR|T06817|T06817 RNA-binding protein - garde... 82 1e-16
TC76948 similar to SP|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein... 81 1e-16
TC84935 similar to PIR|G96631|G96631 probable RNA-binding protei... 79 7e-16
TC76789 similar to GP|15294254|gb|AAK95304.1 AT4g24770/F22K18_30... 78 1e-15
BG586379 similar to PIR|T03442|T034 glycine-rich protein - rice,... 78 1e-15
TC90024 similar to GP|21537200|gb|AAM61541.1 RNA recognition mot... 76 4e-15
TC77624 similar to PIR|T12196|T12196 RNA-binding protein - fava ... 75 7e-15
>TC77756 similar to PIR|T06796|T06796 glycine-rich RNA-binding protein -
garden pea, partial (89%)
Length = 813
Score = 301 bits (771), Expect = 6e-83
Identities = 146/146 (100%), Positives = 146/146 (100%)
Frame = +3
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 60
MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG
Sbjct: 81 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 260
Query: 61 DVVEARVITDRETGRSRGFGFVNFTSEESATSALSMDGQDLNGRNIRVSYANDRQAGGPR 120
DVVEARVITDRETGRSRGFGFVNFTSEESATSALSMDGQDLNGRNIRVSYANDRQAGGPR
Sbjct: 261 DVVEARVITDRETGRSRGFGFVNFTSEESATSALSMDGQDLNGRNIRVSYANDRQAGGPR 440
Query: 121 PGGGYGGGGGYSGGGGGYSGGGGGGW 146
PGGGYGGGGGYSGGGGGYSGGGGGGW
Sbjct: 441 PGGGYGGGGGYSGGGGGYSGGGGGGW 518
>BE124733 similar to PIR|T06796|T06 glycine-rich RNA-binding protein - garden
pea, partial (86%)
Length = 580
Score = 283 bits (724), Expect = 2e-77
Identities = 145/173 (83%), Positives = 145/173 (83%), Gaps = 27/173 (15%)
Frame = +3
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 60
MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG
Sbjct: 39 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 218
Query: 61 DVVEARVITDRETGRSRGFGFVNFTSEESATSALSMDGQ--------------------- 99
DVVEARVITDRETGRSRGFGFVNFTSEESATSALSMDGQ
Sbjct: 219 DVVEARVITDRETGRSRGFGFVNFTSEESATSALSMDGQVVILC**MLIIF*LSF*LVV* 398
Query: 100 ------DLNGRNIRVSYANDRQAGGPRPGGGYGGGGGYSGGGGGYSGGGGGGW 146
DLNGRNIRVSYANDRQAGGPRPGGGYGGGGGYSGGGGGYSGGGG GW
Sbjct: 399 HALVY*DLNGRNIRVSYANDRQAGGPRPGGGYGGGGGYSGGGGGYSGGGGCGW 557
>TC93504 weakly similar to PIR|S46286|S46286 RNA-binding protein - wood
tobacco, partial (55%)
Length = 576
Score = 120 bits (301), Expect(2) = 2e-37
Identities = 60/99 (60%), Positives = 76/99 (76%), Gaps = 8/99 (8%)
Frame = +3
Query: 56 FTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDR 114
F+ YGDV++A++I DR+TGRSRGFGF+ F + E A+SAL +MD ++L+GR +RV+YA +R
Sbjct: 201 FSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAMDNKELDGRTVRVNYATER 380
Query: 115 Q-----AGGPRPGGGYGGGGGYSGGGGGYSGGGG--GGW 146
GG GGGYGGGGGY GGGGGYSGGGG GGW
Sbjct: 381 ARPGFGGGGYGGGGGYGGGGGY-GGGGGYSGGGGNYGGW 494
Score = 50.8 bits (120), Expect(2) = 2e-37
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Frame = +2
Query: 1 MAFCNKIGNLLRQGATQSTQAPVS----SMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAF 56
MAF K+G LL+ A + +S S+ +R MSS+KLFIGG+SY+ D+ LR+AF
Sbjct: 23 MAFFGKMGKLLQNSAVKHINHDLSMSTPSLFQAIRSMSSAKLFIGGVSYSTDETGLREAF 202
>TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
- wheat, partial (95%)
Length = 754
Score = 131 bits (330), Expect = 8e-32
Identities = 66/122 (54%), Positives = 89/122 (72%), Gaps = 12/122 (9%)
Frame = +2
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL++ D+++L AF+ YG++V++++I DRETGRSRGFGFV F +E+S A+ +
Sbjct: 104 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 283
Query: 96 MDGQDLNGRNIRVSYANDRQA----GGPRPGGGY-GGGGGYS------GGGGGYSGGGGG 144
M+GQDL+GRNI V+ A R + GG R GGGY GGGGGY GGGGGY GGGGG
Sbjct: 284 MNGQDLDGRNITVNQAQSRGSGGGGGGGRGGGGYGGGGGGYGGERRGYGGGGGYGGGGGG 463
Query: 145 GW 146
G+
Sbjct: 464 GY 469
>TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-binding
protein {Glycine max}, partial (90%)
Length = 488
Score = 131 bits (329), Expect = 1e-31
Identities = 62/111 (55%), Positives = 81/111 (72%), Gaps = 4/111 (3%)
Frame = +3
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS- 95
+ F+GGL++ D Q+L AF+ +G++ +++VI DRETGRSRGFGFV F E+S A+
Sbjct: 54 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 233
Query: 96 MDGQDLNGRNIRVSYANDRQAGG---PRPGGGYGGGGGYSGGGGGYSGGGG 143
M+GQD++GRNI V+ A R +GG GGGYGGGGGY GGGGGY GGGG
Sbjct: 234 MNGQDIDGRNITVNEAQSRGSGGGGRGGGGGGYGGGGGYGGGGGGYGGGGG 386
>AL374421 similar to PIR|S59529|S59 RNA-binding glycine-rich protein-1
(RGP-1c) - wood tobacco, partial (62%)
Length = 310
Score = 112 bits (281), Expect = 4e-26
Identities = 53/102 (51%), Positives = 74/102 (71%), Gaps = 1/102 (0%)
Frame = +2
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL++ D ++L AF+ YG+++++++I DRETGRSRGFGFV F E+S A+
Sbjct: 17 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 196
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGYSGGGGG 137
M+GQD++GRNI V+ A R +G GGG GGGGY GGGGG
Sbjct: 197 MNGQDMDGRNITVNEAQSRGSG----GGGGRGGGGYGGGGGG 310
>AL371197 homologue to GP|6273331|gb| glycine-rich RNA binding protein
{Medicago sativa}, complete
Length = 437
Score = 112 bits (281), Expect = 4e-26
Identities = 55/103 (53%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Frame = +1
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL++ D+++L AF+ YG++V++++I DRETGRSRGFGFV F +E+S A+ +
Sbjct: 61 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 240
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGYSGGGGGY 138
M+GQDL+GRNI V+ A R GG GGG GG GY GGG GY
Sbjct: 241 MNGQDLDGRNITVNQAQSRGIGG--GGGGGPGGCGYRGGGVGY 363
>TC76561 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
- wheat, partial (95%)
Length = 1054
Score = 102 bits (254), Expect = 5e-23
Identities = 55/93 (59%), Positives = 66/93 (70%), Gaps = 12/93 (12%)
Frame = +1
Query: 66 RVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQA----GGPR 120
++I DRETGRSRGFGFV F +E+S A+ +M+GQDL+GRNI V+ A R + GG R
Sbjct: 445 QIINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNITVNQAQSRGSGGGGGGGR 624
Query: 121 PGGGY-GGGGGYS------GGGGGYSGGGGGGW 146
GGGY GGGGGY GGGGGY GGGGGG+
Sbjct: 625 GGGGYGGGGGGYGGERRGYGGGGGYGGGGGGGY 723
Score = 35.8 bits (81), Expect = 0.006
Identities = 12/31 (38%), Positives = 25/31 (79%)
Frame = +1
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARV 67
+ F+GGL++ D+++L AF+ YG++V+++V
Sbjct: 43 RCFVGGLAWATDNEALEKAFSQYGEIVDSKV 135
>TC76557 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
- wheat, partial (95%)
Length = 912
Score = 102 bits (253), Expect = 7e-23
Identities = 55/92 (59%), Positives = 65/92 (69%), Gaps = 12/92 (13%)
Frame = +1
Query: 67 VITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQA----GGPRP 121
+I DRETGRSRGFGFV F +E+S A+ +M+GQDL+GRNI V+ A R + GG R
Sbjct: 352 IINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNITVNQAQSRGSGGGGGGGRG 531
Query: 122 GGGY-GGGGGYS------GGGGGYSGGGGGGW 146
GGGY GGGGGY GGGGGY GGGGGG+
Sbjct: 532 GGGYGGGGGGYGGERRGYGGGGGYGGGGGGGY 627
Score = 35.8 bits (81), Expect = 0.006
Identities = 12/31 (38%), Positives = 25/31 (79%)
Frame = +3
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARV 67
+ F+GGL++ D+++L AF+ YG++V+++V
Sbjct: 75 RCFVGGLAWATDNEALEKAFSQYGEIVDSKV 167
>CA859237 weakly similar to PIR|T45886|T458 RNA-binding protein cp29 protein
- Arabidopsis thaliana, partial (20%)
Length = 298
Score = 92.8 bits (229), Expect = 4e-20
Identities = 49/97 (50%), Positives = 66/97 (67%), Gaps = 1/97 (1%)
Frame = +2
Query: 51 SLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVS 109
+L+ F +G+V +A VI DRETGRSRGFGFV ++S E A +A+ S++ Q+ +GR I+V
Sbjct: 2 ALKGKFEEFGNVEDAVVIRDRETGRSRGFGFVTYSSNEEAEAAIQSLNDQEFDGRTIKVD 181
Query: 110 YANDRQAGGPRPGGGYGGGGGYSGGGGGYSGGGGGGW 146
A++R PR GGYGGG GGGGGYS G G+
Sbjct: 182 RASERSTPAPR-SGGYGGG----GGGGGYSSRGNSGY 277
>AL388260 weakly similar to SP|Q08937|ROC2_ 29 kDa ribonucleoprotein B
chloroplast precursor (CP29B). [Wood tobacco] {Nicotiana
sylvestris}, partial (26%)
Length = 346
Score = 91.3 bits (225), Expect = 1e-19
Identities = 46/95 (48%), Positives = 64/95 (66%), Gaps = 1/95 (1%)
Frame = +3
Query: 27 LNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTS 86
+ +L + S KLF+GGLS+ DD++LR F YG V +A VI DR+TGRSRGFGFV F S
Sbjct: 57 IKFLTFIMSVKLFVGGLSWGTDDRTLRSKFEEYGTVEDAVVIRDRDTGRSRGFGFVTFAS 236
Query: 87 EESATSAL-SMDGQDLNGRNIRVSYANDRQAGGPR 120
E A A+ +++ + +GRNI+V A +R + PR
Sbjct: 237 NEEAEIAIQNLNDAEFDGRNIKVDRAAERSSPAPR 341
>TC86535 similar to GP|9758076|dbj|BAB08520.1 contains similarity to RNA
binding protein~gene_id:MNF13.1 {Arabidopsis thaliana},
partial (48%)
Length = 1555
Score = 90.5 bits (223), Expect = 2e-19
Identities = 47/122 (38%), Positives = 66/122 (53%), Gaps = 12/122 (9%)
Frame = +1
Query: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
+ K+F+GG+ NV + RD FT YG+V + +++ D T RSRGFGFV F +EE+ L
Sbjct: 529 TKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLL 708
Query: 95 SMDGQ-DLNGRNIRVSYANDRQAGGPRPG--------GGYGGGG---GYSGGGGGYSGGG 142
SM + + G + + A ++A P P YG GG Y G GGG+ G G
Sbjct: 709 SMGNKIEFAGTQVEIKKAEPKKANAPPPSSKRYNDSRSSYGSGGYGDAYDGFGGGFGGVG 888
Query: 143 GG 144
GG
Sbjct: 889 GG 894
Score = 50.8 bits (120), Expect = 2e-07
Identities = 25/87 (28%), Positives = 45/87 (50%)
Frame = +1
Query: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
S K+FIGGL+ F YG++ ++ ++ DR+TG+ RGFGF+ + ++ S
Sbjct: 262 SPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITY-ADPSVVDK 438
Query: 94 LSMDGQDLNGRNIRVSYANDRQAGGPR 120
+ D +N + + + R A G +
Sbjct: 439 VIEDSHIINSKQVEIKRTIPRGAVGSK 519
Score = 31.2 bits (69), Expect = 0.16
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +1
Query: 103 GRNIRVSYANDRQAGGPRPGGGYGGGGGYSGGGGGYSGGGG 143
G + R SY G G YGG G + GGG S G G
Sbjct: 1039 GGSFRSSYDLSGYGGPGESYGAYGGAGAGAAAGGGGSSGAG 1161
Score = 30.8 bits (68), Expect = 0.20
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Frame = +1
Query: 116 AGGPRPGGGYGGGGGYSGG-----GGGYSGGGGG 144
AG GGG G G Y G GGGY G G
Sbjct: 1120 AGAAAGGGGSSGAGAYQSGYDASLGGGYGGAASG 1221
Score = 29.6 bits (65), Expect = 0.45
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Frame = +1
Query: 122 GGGYGG---GGGYSGGGGGYSGGG 142
GGGYGG G + G GGY G G
Sbjct: 1192 GGGYGGAASGASFYGSRGGYGGAG 1263
Score = 28.5 bits (62), Expect = 1.0
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Frame = +1
Query: 124 GYGGGG----GYSGGGGGYSGGGGG 144
GYGG G Y G G G + GGGG
Sbjct: 1072 GYGGPGESYGAYGGAGAGAAAGGGG 1146
>TC89523 weakly similar to GP|17065276|gb|AAL32792.1 Unknown protein
{Arabidopsis thaliana}, partial (64%)
Length = 729
Score = 83.6 bits (205), Expect = 3e-17
Identities = 43/90 (47%), Positives = 63/90 (69%), Gaps = 1/90 (1%)
Frame = +3
Query: 23 VSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFV 82
VS L R + KLF+GGLS++ +++L DAF+ YG VVEA+VITDR + +S+G+GFV
Sbjct: 87 VSPFLLTFRRAIAFKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFV 266
Query: 83 NFTSEESATSALS-MDGQDLNGRNIRVSYA 111
F S++ A A++ M+ + LNGR + V YA
Sbjct: 267 TFASQDEAEKAITEMNEKALNGRVVFVDYA 356
>TC76790 similar to PIR|T06817|T06817 RNA-binding protein - garden pea,
partial (79%)
Length = 1141
Score = 81.6 bits (200), Expect = 1e-16
Identities = 39/83 (46%), Positives = 54/83 (64%), Gaps = 1/83 (1%)
Frame = +1
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
++++ L++ VD+ L F+ +G +V ARV+ DRETGRSRGFGFV + E A+ +
Sbjct: 655 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 834
Query: 96 MDGQDLNGRNIRVSYANDRQAGG 118
+DGQ L GR IRVS A DR G
Sbjct: 835 LDGQSLEGRTIRVSVAEDRPRRG 903
Score = 61.6 bits (148), Expect = 1e-10
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +1
Query: 15 ATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETG 74
A T A S+ ++ +KLF+G ++VD + L F G V A VI +R+T
Sbjct: 298 AETETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTD 477
Query: 75 RSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQAGGPRP 121
SRGFGFV ++ E A SA+ +G D NGR++ V+ A+ + G RP
Sbjct: 478 LSRGFGFVTMSTVEEAESAVEKFNGYDYNGRSLVVNKASPK---GSRP 612
>TC76948 similar to SP|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A
chloroplast precursor (CP29A). [Wood tobacco] {Nicotiana
sylvestris}, partial (61%)
Length = 1374
Score = 81.3 bits (199), Expect = 1e-16
Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Frame = +1
Query: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL- 94
+++ +G L++ VD+ +L F G V+EA+VI DRE+GRSRGFGFV F+S + SA+
Sbjct: 676 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 855
Query: 95 SMDGQDLNGRNIRVSYANDR 114
++DG DLNGR IRVS A+ R
Sbjct: 856 TLDGADLNGRAIRVSPADSR 915
Score = 66.2 bits (160), Expect = 4e-12
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Frame = +1
Query: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTS-EESATSA 93
+ +LF+G L ++VD L + F GDV VI D+ TGRSRGFGFV +S E +A
Sbjct: 337 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 516
Query: 94 LSMDGQDLNGRNIRVS-------------YANDRQAGGPRPGGGYGGG 128
++G ++GR +RV+ + + + GG RP G GG
Sbjct: 517 QQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGG 660
>TC84935 similar to PIR|G96631|G96631 probable RNA-binding protein F8A5.17
[imported] - Arabidopsis thaliana, partial (41%)
Length = 552
Score = 79.0 bits (193), Expect = 7e-16
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Frame = +2
Query: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL- 94
+++F+GGL ++V ++ L AF YG ++E +++ +R+TGR RGFGF+ F+ A+
Sbjct: 137 NRIFVGGLGWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFSDRRGMEDAIK 316
Query: 95 SMDGQDLNGRNIRVSYANDRQAG---GPRPGGGYGGGGGYSGGGGGYSG 140
MDG+++ R I V+ A R G R GG+ GG S G G G
Sbjct: 317 EMDGREIGDRIISVNKAQPRMGGDDADQRYRGGFSSGGRGSYGAGDRVG 463
>TC76789 similar to GP|15294254|gb|AAK95304.1 AT4g24770/F22K18_30
{Arabidopsis thaliana}, partial (62%)
Length = 1294
Score = 78.2 bits (191), Expect = 1e-15
Identities = 38/82 (46%), Positives = 55/82 (66%), Gaps = 1/82 (1%)
Frame = +3
Query: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
S + ++G L ++VD+ SL F+ +G V A+V+ DRETGRSRGFGFV ++E A
Sbjct: 729 SGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDA 908
Query: 94 L-SMDGQDLNGRNIRVSYANDR 114
+ ++DGQ NGR IRV+ A +R
Sbjct: 909 IAALDGQSFNGRAIRVNVAEER 974
Score = 63.2 bits (152), Expect = 4e-11
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Frame = +3
Query: 14 GATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRET 73
G T+S + + ++ K+F+G L ++VD + L F G V A VI +R+T
Sbjct: 387 GETESNENEEVEVASFEEPSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDT 566
Query: 74 GRSRGFGFVNF-TSEESATSALSMDGQDLNGRNIRVSYANDRQAGGPR 120
RSRGFGFV TSEE + G +L+GR + V+ A R G PR
Sbjct: 567 DRSRGFGFVTMSTSEEVERAVNKFSGFELDGRLLTVNKAAPR--GTPR 704
>BG586379 similar to PIR|T03442|T034 glycine-rich protein - rice, partial
(28%)
Length = 701
Score = 77.8 bits (190), Expect = 1e-15
Identities = 46/103 (44%), Positives = 62/103 (59%), Gaps = 18/103 (17%)
Frame = +1
Query: 58 TYGDVVEARVITDRET-GRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQ 115
+Y V+ R +++ E GRSRGFGFV ++S E A +A+ S++ Q+ +GR I+V A++R
Sbjct: 103 SYLFVISCRDLSNFENKGRSRGFGFVTYSSNEEAEAAIQSLNDQEFDGRTIKVDRASERS 282
Query: 116 AGGPRPG--GGYGGGGGYS--------------GGGGGYSGGG 142
PR G GG GGGGGYS GGGGGY GGG
Sbjct: 283 TPAPRSGGYGGGGGGGGYSSRGNSGYRSSRGRGGGGGGYGGGG 411
>TC90024 similar to GP|21537200|gb|AAM61541.1 RNA recognition
motif-containing protein SEB-4 {Arabidopsis thaliana},
partial (43%)
Length = 1209
Score = 76.3 bits (186), Expect = 4e-15
Identities = 40/107 (37%), Positives = 59/107 (54%)
Frame = +2
Query: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
+K+F+GGL++ +R F +GD++EA +ITD+ TG+S+G+GFV F ESA A +
Sbjct: 140 TKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACA 319
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGYSGGGGGYSGGG 142
++GR + A+ G PRP G G GG G S G
Sbjct: 320 DPNPVIDGRRANCNIAS---LGRPRPSPPRGRGTYQGGGCGDRSSSG 451
>TC77624 similar to PIR|T12196|T12196 RNA-binding protein - fava bean
(fragment), partial (90%)
Length = 1214
Score = 75.5 bits (184), Expect = 7e-15
Identities = 38/83 (45%), Positives = 57/83 (67%), Gaps = 1/83 (1%)
Frame = +1
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS- 95
KLF+G L++ V +SL AF +G VV ARV+ D ETG+SRG+GFV++ ++ +AL+
Sbjct: 667 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 846
Query: 96 MDGQDLNGRNIRVSYANDRQAGG 118
MD +L GR +RVS A +++ G
Sbjct: 847 MDNVELEGRTLRVSLAQGKRS*G 915
Score = 59.3 bits (142), Expect = 5e-10
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +1
Query: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL- 94
+KL+ G L Y+VD L YG V+ DR+TG+SRGF FV + E + +
Sbjct: 391 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQ 570
Query: 95 SMDGQDLNGRNIRVSYAN 112
++DG++ GR +RV++++
Sbjct: 571 NLDGKEFMGRTLRVNFSD 624
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,427,102
Number of Sequences: 36976
Number of extensions: 51903
Number of successful extensions: 8290
Number of sequences better than 10.0: 602
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4395
length of query: 146
length of database: 9,014,727
effective HSP length: 87
effective length of query: 59
effective length of database: 5,797,815
effective search space: 342071085
effective search space used: 342071085
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC146705.10