Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146683.17 - phase: 0 
         (494 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87697 similar to PIR|T47802|T47802 hypothetical protein F24G16...   328  0.0
BE204873 similar to GP|18767124|gb| unknown {Saccharomyces cerev...   105  2e-24
BQ141914                                                               64  1e-10
BQ141705                                                               44  1e-06
TC88683 similar to GP|21593856|gb|AAM65823.1 unknown {Arabidopsi...    28  6.2

>TC87697 similar to PIR|T47802|T47802 hypothetical protein F24G16.50 -
           Arabidopsis thaliana, partial (7%)
          Length = 1514

 Score =  328 bits (841), Expect(4) = 0.0
 Identities = 172/173 (99%), Positives = 172/173 (99%)
 Frame = +1

Query: 121 GINETFSDSINKGENALRSSVDTATSFIDSVVKNATTSADNAFSKVFSAADQTGDLANKK 180
           GINETFSDSINKGENALRSSVDTATSFIDSV KNATTSADNAFSKVFSAADQTGDLANKK
Sbjct: 634 GINETFSDSINKGENALRSSVDTATSFIDSVAKNATTSADNAFSKVFSAADQTGDLANKK 813

Query: 181 ITSFSSEIDGVTSKAPGLVIDVLRRTVVAVESSLSSGASYVVYLYGSAKEFIPAEIRDTV 240
           ITSFSSEIDGVTSKAPGLVIDVLRRTVVAVESSLSSGASYVVYLYGSAKEFIPAEIRDTV
Sbjct: 814 ITSFSSEIDGVTSKAPGLVIDVLRRTVVAVESSLSSGASYVVYLYGSAKEFIPAEIRDTV 993

Query: 241 NIYEDKAAQVLRPVGSATQQIYMAFYSLEKSLGLDPNDPIIPFVVFVGSSATL 293
           NIYEDKAAQVLRPVGSATQQIYMAFYSLEKSLGLDPNDPIIPFVVFVGSSATL
Sbjct: 994 NIYEDKAAQVLRPVGSATQQIYMAFYSLEKSLGLDPNDPIIPFVVFVGSSATL 1152



 Score =  235 bits (600), Expect(4) = 0.0
 Identities = 121/121 (100%), Positives = 121/121 (100%)
 Frame = +3

Query: 1   DFESRGVVEENVHLGLYHGTPSLRSSFTAQAIKTVSAWDNSSLSTGEFRYSLSTVPEELV 60
           DFESRGVVEENVHLGLYHGTPSLRSSFTAQAIKTVSAWDNSSLSTGEFRYSLSTVPEELV
Sbjct: 273 DFESRGVVEENVHLGLYHGTPSLRSSFTAQAIKTVSAWDNSSLSTGEFRYSLSTVPEELV 452

Query: 61  DFAKQSTEVSEPLVAPTVHPEAILSSTDITSGKIESVPSLIKGGNESLAATKASATEVFA 120
           DFAKQSTEVSEPLVAPTVHPEAILSSTDITSGKIESVPSLIKGGNESLAATKASATEVFA
Sbjct: 453 DFAKQSTEVSEPLVAPTVHPEAILSSTDITSGKIESVPSLIKGGNESLAATKASATEVFA 632

Query: 121 G 121
           G
Sbjct: 633 G 635



 Score =  174 bits (442), Expect(4) = 0.0
 Identities = 94/107 (87%), Positives = 95/107 (87%), Gaps = 8/107 (7%)
 Frame = +2

Query: 296  QIYAGLFIGCGNMEVTQEIYPLNQLSSSWPGTQML--------TCEKKMVFLIFDGLLGF 347
            Q + GLFIGCGNMEVTQEIYPLNQLSSSWPGTQML        TCEKKMVFLIFDGLLGF
Sbjct: 1142 QQHYGLFIGCGNMEVTQEIYPLNQLSSSWPGTQMLYL*MSAPRTCEKKMVFLIFDGLLGF 1321

Query: 348  AMQV*LQLRLMAPYASC*RGVET*MTP*LLLLFKI*KLLRTVPRLLC 394
            AMQV*LQLRLMAPYASC*RGVET*MTP*LLLLFKI*KLLRTVPR  C
Sbjct: 1322 AMQV*LQLRLMAPYASC*RGVET*MTP*LLLLFKI*KLLRTVPRGYC 1462



 Score = 29.6 bits (65), Expect(4) = 0.0
 Identities = 16/19 (84%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = +1

Query: 392  LLCWML-MVLVLKALQDP* 409
            LLCW   MVLVLKALQDP*
Sbjct: 1456 LLCWDAEMVLVLKALQDP* 1512


>BE204873 similar to GP|18767124|gb| unknown {Saccharomyces cerevisiae},
           partial (30%)
          Length = 574

 Score =  105 bits (262), Expect(2) = 2e-24
 Identities = 64/81 (79%), Positives = 66/81 (81%)
 Frame = +2

Query: 306 GNMEVTQEIYPLNQLSSSWPGTQMLTCEKKMVFLIFDGLLGFAMQV*LQLRLMAPYASC* 365
           G M+ TQ +Y    L  S P T    CEKKMVFLIFDGLLGFAMQV*LQLRLMAPYASC*
Sbjct: 326 GKMKRTQMLY----L*MSAPRT----CEKKMVFLIFDGLLGFAMQV*LQLRLMAPYASC* 481

Query: 366 RGVET*MTP*LLLLFKI*KLL 386
           RGVET*MTP*LLLLFKI*KLL
Sbjct: 482 RGVET*MTP*LLLLFKI*KLL 544



 Score = 25.0 bits (53), Expect(2) = 2e-24
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 389 VPRLLCWML 397
           VPRLLCWML
Sbjct: 546 VPRLLCWML 572


>BQ141914 
          Length = 810

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 33/55 (60%), Positives = 40/55 (72%)
 Frame = +1

Query: 6   GVVEENVHLGLYHGTPSLRSSFTAQAIKTVSAWDNSSLSTGEFRYSLSTVPEELV 60
           GV ++N H G +HGTPSL SSFTAQAIKTV   DN+SL TG+   SL TVP  ++
Sbjct: 154 GVAQQNAH*G*HHGTPSLISSFTAQAIKTVLYRDNTSLHTGQSTLSLFTVPR*II 318


>BQ141705 
          Length = 740

 Score = 43.9 bits (102), Expect(2) = 1e-06
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +1

Query: 70  SEPLVAPTVHPEAILSSTDITSGKIESVPSLIKGGNE 106
           ++P++ PT HPEA+L ++DI +GKI   P+L  GGNE
Sbjct: 415 NDPIIPPTEHPEALLFTSDINTGKIAYHPTLN*GGNE 525



 Score = 26.6 bits (57), Expect(2) = 1e-06
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 12  VHLGLYHGTPSLRSSFTAQAIKTVSAWDNSSLSTGEFRYSLSTVP 56
           VH+    GTP LR   + +  +T   WD   LST +  Y ++  P
Sbjct: 237 VHMR*CGGTP*LRYKCSGKL*RTGGNWDIP*LSTEQLTYIITPAP 371


>TC88683 similar to GP|21593856|gb|AAM65823.1 unknown {Arabidopsis
           thaliana}, partial (77%)
          Length = 673

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 17/78 (21%), Positives = 36/78 (45%), Gaps = 2/78 (2%)
 Frame = -2

Query: 210 VESSLSSGASYVVYLYGSAKEFIPAEIRDTVNIYEDKAAQVLRPVGSATQQIYMAFYS-- 267
           VE  L+   S  + +  +   F+P   +  +NI   +    ++P+GS    I M  ++  
Sbjct: 453 VEDPLNRSFSNNILIIPNKINFLPNITKKIINILLTQIVSTIKPIGSKNTHIKMKPFASV 274

Query: 268 LEKSLGLDPNDPIIPFVV 285
           +++   ++    I+PF V
Sbjct: 273 IKRVESIEKGGAIVPFEV 220


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.333    0.143    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,286,665
Number of Sequences: 36976
Number of extensions: 149589
Number of successful extensions: 1122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of query: 494
length of database: 9,014,727
effective HSP length: 100
effective length of query: 394
effective length of database: 5,317,127
effective search space: 2094948038
effective search space used: 2094948038
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 60 (27.7 bits)


Medicago: description of AC146683.17