TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146681.9 + phase: 2 /pseudo
         (249 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BM779095 weakly similar to PIR|B84431|B8 probable receptor prote...    30  0.87
TC86171 weakly similar to GP|13507547|gb|AAK28636.1 unknown prot...    30  0.87
TC87983 similar to SP|Q10128|YSO2_CAEEL Hypothetical 81.6 kDa pr...    29  1.5
TC80652 similar to GP|14161088|emb|CAB76907. alpha-fucosidase {C...    29  1.9
TC80264 similar to GP|21689699|gb|AAM67471.1 putative F-box fami...    29  1.9
TC82409 similar to GP|13249030|gb|AAK16647.1 F-box containing pr...    28  2.5
AW689938 weakly similar to GP|22296343|db similar to leucine-ric...    27  5.6
TC86614 similar to PIR|T06308|T06308 protein phosphatase 2C homo...    27  7.4
TC88413 weakly similar to GP|10176786|dbj|BAB09900. gene_id:MIK1...    27  7.4
TC85262 similar to GP|9279671|dbj|BAB01228.1 transport inhibitor...    27  7.4
TC90163 similar to SP|Q9U6A1|PRO_DROVI Protein prospero. [Fruit ...    27  9.6

>BM779095 weakly similar to PIR|B84431|B8 probable receptor protein kinase
           [imported] - Arabidopsis thaliana, partial (15%)
          Length = 721

 Score = 30.0 bits (66), Expect = 0.87
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
 Frame = +3

Query: 82  RLACLKLEACDLSCDVVNHLLDSLPVLNG---TLKSLSIAENCLGSKVAGALGRFLSTPI 138
           ++ C  L   DLS    N+L DS P+      +LKSL++A N +   +  ALG+     +
Sbjct: 138 KIDCKSLLQLDLSG---NNLSDSFPISLSNCTSLKSLNLASNFISGGIPKALGQL--NKL 302

Query: 139 EVLDASGIDL---LPSGFLELQNMLTIEEELSLVIINIS 174
           + LD S   +   +PS   EL N+     EL L   NI+
Sbjct: 303 QSLDLSHNQITGWIPS---ELSNVCGSLLELKLSFNNIT 410


>TC86171 weakly similar to GP|13507547|gb|AAK28636.1 unknown protein
           {Arabidopsis thaliana}, partial (89%)
          Length = 2343

 Score = 30.0 bits (66), Expect = 0.87
 Identities = 32/116 (27%), Positives = 50/116 (42%), Gaps = 1/116 (0%)
 Frame = +1

Query: 49  PNLEDLDISDNPIEDEGLRYLIPYFAGTSEMCSRLACLKLEACDLSCDVVNHLLDSLPVL 108
           P+L  +D+S + + D GLR L        + C  L  L L  CD       H L  L  L
Sbjct: 619 PSLLAVDVSGSNVTDHGLRLL--------KDCLNLQALTLNYCD---QFSEHGLKHLSGL 765

Query: 109 NGTLKSLSIAENCLGSKVAGALGRFLS-TPIEVLDASGIDLLPSGFLELQNMLTIE 163
           +  L SLSI ++C  +     +  F +   +E LD      +  GF+  + +  +E
Sbjct: 766 S-NLTSLSIRKSC--AVTPDGMRAFSNLVNLEKLDLERCSDIHGGFVHFKGLKKLE 924



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 17/54 (31%), Positives = 27/54 (49%)
 Frame = +1

Query: 48   MPNLEDLDISDNPIEDEGLRYLIPYFAGTSEMCSRLACLKLEACDLSCDVVNHL 101
            M  L  L++S++ + +EGLRYL P           L  L LE+C ++   +  L
Sbjct: 1780 MTALRSLNVSNSRVTNEGLRYLKP--------LKNLRTLSLESCKVNAADIKKL 1917


>TC87983 similar to SP|Q10128|YSO2_CAEEL Hypothetical 81.6 kDa protein
           F56D1.2 in chromosome II precursor. {Caenorhabditis
           elegans}, partial (2%)
          Length = 745

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 64  EGLRYLIPYFAGTSEMCSRLACLKLEACDLSCDVVNHLLDSLPVLNGTLKSLSIAENC 121
           E L ++ PY+ G +       C  L    L   V +HLL  +P +N    SL I+ +C
Sbjct: 692 EILAFICPYYFGYNNDIKL*ICFHLIK*TLFSCVASHLLLLVPCINSLALSLDISFHC 519


>TC80652 similar to GP|14161088|emb|CAB76907. alpha-fucosidase {Cicer
           arietinum}, partial (81%)
          Length = 788

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 30/101 (29%), Positives = 40/101 (38%)
 Frame = +2

Query: 40  NLGYAFAYMPNLEDLDISDNPIEDEGLRYLIPYFAGTSEMCSRLACLKLEACDLSCDVVN 99
           NL  AF+     + LDI+ NPI   G  Y++P   G      RL       C+     V 
Sbjct: 53  NLSLAFSNDAVEQVLDINGNPIFPGGKYYILPAIRGPLGGGLRLGKSSNSDCE-----VT 217

Query: 100 HLLDSLPVLNGTLKSLSIAENCLGSKVAGALGRFLSTPIEV 140
            + D   V+NG     SI E   G         F  TPI++
Sbjct: 218 VVQDYNEVINGVPVKFSIPEISPGI-------IFTGTPIDI 319


>TC80264 similar to GP|21689699|gb|AAM67471.1 putative F-box family protein
           AtFBL3 {Arabidopsis thaliana}, partial (4%)
          Length = 1305

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 80  CSRLACLKLEACDLSCDV 97
           C  LACLKLE+CD+  ++
Sbjct: 645 CPNLACLKLESCDMVTEI 698


>TC82409 similar to GP|13249030|gb|AAK16647.1 F-box containing protein TIR1
           {Populus tremula x Populus tremuloides}, partial (37%)
          Length = 1038

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +2

Query: 36  DDAENLGYAFAYMPNLEDLDISDNPIEDEGLRYLIPYFAGTSEMCSRLACLKLEACDLSC 95
           D   +L Y     PNL+ L+I D+P  D  LR  + ++         +  L + +C L+ 
Sbjct: 458 DTDNSLKYVLEGCPNLQKLEIRDSPFGDGALRSGLHHY-------YNMRFLWMSSCKLTR 616

Query: 96  DVVNHLLDSLP-----VLNGTLKSLSIAE 119
                +  +LP     V+N  +++++  E
Sbjct: 617 QACQEVARALPQMVMEVINNDVEAVNDIE 703


>AW689938 weakly similar to GP|22296343|db similar to leucine-rich repeat
           transmembrane protein kinase 1, partial (16%)
          Length = 655

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 13/31 (41%), Positives = 20/31 (63%)
 Frame = +3

Query: 41  LGYAFAYMPNLEDLDISDNPIEDEGLRYLIP 71
           LGY  + + +L  LD+SDN I D+ + Y +P
Sbjct: 339 LGYLLSDLMSLRKLDLSDNKIHDQ-IPYQLP 428


>TC86614 similar to PIR|T06308|T06308 protein phosphatase 2C homolog
           F11C18.60 - Arabidopsis thaliana, partial (92%)
          Length = 1556

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
 Frame = +3

Query: 108 LNGTLKSLSIAENCLGSKVAGALGRFLSTP-IEVLDASG-IDLLPSGFLELQNMLTIEEE 165
           L  +L S S + NC  S    A+G +LSTP  E     G  D L  G   +Q      E+
Sbjct: 120 LINSLFSSSFSINCSSSPQKIAMGIYLSTPKTEKFSEDGENDRLRYGLSSMQGWRASMED 299

Query: 166 LSLVIINISKN---------RGGIQTARFLSKLLPQ 192
                 ++ K+          GG   A+F +K L Q
Sbjct: 300 AHAAYTDLDKSTSFFGVYDGHGGKVVAKFCAKFLHQ 407


>TC88413 weakly similar to GP|10176786|dbj|BAB09900.
           gene_id:MIK19.29~pir||T01344~similar to unknown protein
           {Arabidopsis thaliana}, partial (10%)
          Length = 1288

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 26  LSHRGNNLRKDDAENLGYAF 45
           LSH+GN L+K DAE +   F
Sbjct: 539 LSHKGNGLKKGDAERIVTVF 480


>TC85262 similar to GP|9279671|dbj|BAB01228.1 transport inhibitor
            response-like protein {Arabidopsis thaliana}, partial
            (47%)
          Length = 1291

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 95   CDVVNHLLDSLPVLNGTLKSLSIAEN 120
            C +  HLLDSLP+ + T+   +  EN
Sbjct: 1031 CTIQIHLLDSLPIFHVTICLFTFTEN 954


>TC90163 similar to SP|Q9U6A1|PRO_DROVI Protein prospero. [Fruit fly]
           {Drosophila virilis}, partial (1%)
          Length = 951

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 206 MPIESLSIISSALKFAKGIYGVPVSYIGDLLDLRCWQVVTSW 247
           +PI  LS +  +L F   I+ +PVSY    LDL  ++  TS+
Sbjct: 792 LPISILSYVPCSLTF---IHNLPVSYFSYSLDLVYYRGSTSY 676


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.330    0.146    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,912,541
Number of Sequences: 36976
Number of extensions: 107171
Number of successful extensions: 644
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of query: 249
length of database: 9,014,727
effective HSP length: 94
effective length of query: 155
effective length of database: 5,538,983
effective search space: 858542365
effective search space used: 858542365
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)