BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146664.11 + phase: 0
(248 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79074 homologue to GP|21111803|gb|AAM40099.1 glycine rich prot... 39 0.002
AL374081 weakly similar to GP|21553841|gb| unknown {Arabidopsis ... 37 0.007
AL374080 37 0.007
TC90578 homologue to GP|10178144|dbj|BAB11589. gene_id:MPO12.6~u... 32 0.17
BQ144020 homologue to PIR|B84620|B846 hypothetical protein At2g2... 30 0.66
TC80871 similar to GP|17977868|emb|CAD12663. casein kinase II al... 28 2.5
TC88331 weakly similar to GP|21593279|gb|AAM65228.1 unknown {Ara... 28 3.3
TC92328 similar to PIR|T52080|T52080 multi resistance protein [i... 28 4.3
TC86977 weakly similar to GP|19880625|gb|AAM00426.1 putative ter... 28 4.3
BQ135452 28 4.3
BG585334 similar to GP|20161490|db beta-1 3 glucanase-like prote... 27 5.6
TC81070 similar to GP|14586364|emb|CAC42895. putative protein {A... 27 5.6
TC87825 similar to GP|21553995|gb|AAM63076.1 PP2A regulatory sub... 27 7.3
>TC79074 homologue to GP|21111803|gb|AAM40099.1 glycine rich protein
{Xanthomonas campestris pv. campestris str. ATCC 33913},
partial (3%)
Length = 1209
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/82 (29%), Positives = 37/82 (44%), Gaps = 5/82 (6%)
Frame = -2
Query: 1 MGNCLLGANSDPDTLIKVITFDGNIMEFYPPITVNFITNEFQGHAIFPTND-----QSSK 55
MG C +S I+++ G + +F PI+VN + N F SSK
Sbjct: 767 MGGCFSSRSSCTSKKIRLVHLSGYVEDFEQPISVNQVINSRNPPTHFVCTSLQLLSSSSK 588
Query: 56 PLCQFDELVAGQSYYLLPMTVL 77
PL +L G Y++LP ++L
Sbjct: 587 PLKGDTQLQPGNVYFMLPYSIL 522
>AL374081 weakly similar to GP|21553841|gb| unknown {Arabidopsis thaliana},
partial (24%)
Length = 524
Score = 37.0 bits (84), Expect = 0.007
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +3
Query: 171 WKVKLCITPEKLLEILSQEVSTKELIESVRIVA 203
WKVKL I +L EILS++V+T LIE +R+ A
Sbjct: 3 WKVKLVIDTRQLEEILSEQVNTGALIEKMRMAA 101
>AL374080
Length = 490
Score = 37.0 bits (84), Expect = 0.007
Identities = 20/67 (29%), Positives = 34/67 (49%)
Frame = +1
Query: 16 IKVITFDGNIMEFYPPITVNFITNEFQGHAIFPTNDQSSKPLCQFDELVAGQSYYLLPMT 75
I+++ G+I++F P TV + G+ +F + PL + L G YYLLP+
Sbjct: 100 IRILCDSGSILQFKGPKTVAQVLENHPGYGVFRQGHVA--PLSDQESLSYGLLYYLLPLK 273
Query: 76 VLSPNNK 82
+ P+ K
Sbjct: 274 EVQPDQK 294
>TC90578 homologue to GP|10178144|dbj|BAB11589. gene_id:MPO12.6~unknown
protein {Arabidopsis thaliana}, partial (1%)
Length = 1100
Score = 32.3 bits (72), Expect = 0.17
Identities = 23/62 (37%), Positives = 31/62 (49%), Gaps = 2/62 (3%)
Frame = -3
Query: 175 LCITPEKLLEILSQEVSTKELIESVRIVAKCGVTAASSGGCGISS--TTSIVSDQWSLSS 232
LC P + E+L E + L E V + CG+TAAS IS+ T + + S SS
Sbjct: 414 LCNDPSRYNELLMTETKSTSLSEEVPFLEICGLTAASRILDRISTEGTLTFSGSRVSFSS 235
Query: 233 SG 234
SG
Sbjct: 234 SG 229
>BQ144020 homologue to PIR|B84620|B846 hypothetical protein At2g23070
[imported] - Arabidopsis thaliana, partial (14%)
Length = 573
Score = 30.4 bits (67), Expect = 0.66
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 76 VLSPNNKIDYPSTCATAETGGGG 98
+L+P ++D+P+ CA + GGGG
Sbjct: 378 MLAPGRRVDFPNFCAMSTGGGGG 310
>TC80871 similar to GP|17977868|emb|CAD12663. casein kinase II alpha subunit
{Sinapis alba}, partial (41%)
Length = 731
Score = 28.5 bits (62), Expect = 2.5
Identities = 9/21 (42%), Positives = 15/21 (70%)
Frame = -2
Query: 78 SPNNKIDYPSTCATAETGGGG 98
+P ++D+P+ CA + GGGG
Sbjct: 244 APGRRVDFPNFCAMSTGGGGG 182
>TC88331 weakly similar to GP|21593279|gb|AAM65228.1 unknown {Arabidopsis
thaliana}, partial (43%)
Length = 1085
Score = 28.1 bits (61), Expect = 3.3
Identities = 20/38 (52%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Frame = -1
Query: 207 VTAASSGGCGISST-TSIVSDQWSLSSSGRSAPSKVDA 243
VT SS G SS+ +S VS ++SLSSSG S P V A
Sbjct: 641 VT*LSS*GLDSSSSFSSSVSTKFSLSSSGSSGPKPVKA 528
>TC92328 similar to PIR|T52080|T52080 multi resistance protein [imported] -
Arabidopsis thaliana, partial (18%)
Length = 1133
Score = 27.7 bits (60), Expect = 4.3
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = -1
Query: 115 PLPAPYRMSLDYQYYQGVGLLKRT-STESFSCRTNRSSVNKSTISSSRRSSRKSTGIWKV 173
PLP +S+D G+ L + S +F + SS +++ +S+S ST +
Sbjct: 887 PLPTIMFLSIDLI*NSGIPLDREEYSVTNFRNMDDLSSNSRNGVSNSATRPSLSTRT*SL 708
Query: 174 KLCITPEKLLEILSQEVSTKELIESVRIVAKCGVTAASSGGCGISSTTSI 223
+ + I VST + + SVRI+ ++ A S SS+TSI
Sbjct: 707 SMTVG------IRCAMVSTVQSLNSVRIIFWIRLSVAVSTDAVASSSTSI 576
>TC86977 weakly similar to GP|19880625|gb|AAM00426.1 putative terpene
synthase {Citrus x paradisi}, partial (49%)
Length = 1812
Score = 27.7 bits (60), Expect = 4.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 105 HVRSQSVPTTPLPAPYRMSLDYQYYQGVGLLKRTS 139
H R TP+P R+ +Q +GVGLL +T+
Sbjct: 757 HFRKIGFQFTPIPTSKRVWKHFQMVEGVGLLYQTT 861
>BQ135452
Length = 744
Score = 27.7 bits (60), Expect = 4.3
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = -1
Query: 38 TNEFQGHAIFPTNDQSSKPLCQFDELVA 65
+N+F GH +F N KP C + ++ A
Sbjct: 729 SNQFSGHDVFFLNKVKKKPFCSWGKMKA 646
>BG585334 similar to GP|20161490|db beta-1 3 glucanase-like protein {Oryza
sativa (japonica cultivar-group)}, partial (39%)
Length = 835
Score = 27.3 bits (59), Expect = 5.6
Identities = 18/52 (34%), Positives = 26/52 (49%)
Frame = +1
Query: 75 TVLSPNNKIDYPSTCATAETGGGGQIIRQGHVRSQSVPTTPLPAPYRMSLDY 126
T +P + P+T T +GGGG Q V S+S T L +++LDY
Sbjct: 400 TTTTPTSPTVTPTTPGTGSSGGGGGGGGQWCVASESAAETTL----KVALDY 543
>TC81070 similar to GP|14586364|emb|CAC42895. putative protein {Arabidopsis
thaliana}, partial (23%)
Length = 767
Score = 27.3 bits (59), Expect = 5.6
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 23 GNIMEFYPPITVNFITNEFQGHAIFPTNDQSSKPLCQFD-ELVAGQSYYLLPM 74
G IM +P + V + F GH I P+ D EL+ GQ+Y++LP+
Sbjct: 145 GEIMFEFPEMMVCHADSFFIGHPI---------PVLSIDDELMLGQTYFVLPI 276
>TC87825 similar to GP|21553995|gb|AAM63076.1 PP2A regulatory subunit
{Arabidopsis thaliana}, partial (94%)
Length = 1448
Score = 26.9 bits (58), Expect = 7.3
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 123 SLDYQYYQGVGLLKRTSTESFSCRTNRSSVNKSTISSSRRSSRKSTGIWKVKLC 176
SL Q + + ST +R S KST +S R+ +T IW K C
Sbjct: 796 SLASQCCSSCTVYEAISTNHMCYLRSRCSGRKSTSLTSTRTQTPTTDIWATKSC 957
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,037,547
Number of Sequences: 36976
Number of extensions: 112288
Number of successful extensions: 586
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of query: 248
length of database: 9,014,727
effective HSP length: 94
effective length of query: 154
effective length of database: 5,538,983
effective search space: 853003382
effective search space used: 853003382
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146664.11