BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146649.9 - phase: 0 /pseudo
(1684 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 52 4e-11
BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 59 2e-08
TC93065 57 6e-08
TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 56 1e-07
CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabi... 43 0.001
AW685995 similar to PIR|I51618|I516 nucleolar phosphoprotein - A... 41 0.005
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 37 0.065
TC83119 similar to GP|13357253|gb|AAK20050.1 putative zinc finge... 37 0.065
TC85720 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pi... 35 0.19
BF644693 homologue to GP|2598599|emb MtN4 {Medicago truncatula},... 35 0.32
TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finge... 34 0.42
TC80683 homologue to GP|8777424|dbj|BAA97014.1 gb|AAF56406.1~gen... 34 0.42
TC76916 MtN4 34 0.42
TC84935 similar to PIR|G96631|G96631 probable RNA-binding protei... 34 0.55
TC85721 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pi... 33 0.72
AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapi... 33 0.72
TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d... 33 0.72
TC78733 similar to GP|21592813|gb|AAM64762.1 ids4-like protein {... 33 0.94
TC87244 similar to GP|13374868|emb|CAC34502. putative protein {A... 33 0.94
TC83616 similar to GP|16226661|gb|AAL16226.1 At2g28910/F8N16.20 ... 32 1.6
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 51.6 bits (122), Expect(2) = 4e-11
Identities = 36/91 (39%), Positives = 48/91 (52%)
Frame = -1
Query: 1241 RIQSTRRH*LY*NICSSCKIGSNQVTSILCN*SWHNIISNGCQKCFS*WCH*RRSVCQTT 1300
RIQS RR+ L * + C+ GS + C + NGC++C *W R VCQ T
Sbjct: 392 RIQSKRRNRL**GFFTCCQNGSY*NFNSFCCIHGVQAVPNGCEECIY*WRSQRGGVCQAT 213
Query: 1301 SWV*GS*AS*PCL*T**ITIRLETSSQSLV* 1331
SW+* + C+ * TI E SS+S+V*
Sbjct: 212 SWI*RCRGTKSCVQIE*DTIWSEASSKSMV* 120
Score = 35.8 bits (81), Expect(2) = 4e-11
Identities = 24/53 (45%), Positives = 30/53 (56%)
Frame = -2
Query: 1172 *AKNC*RSSLR*WMDTSYARRAKSVSKK*CVGSGTQTQSEEHYWNKMGIQKQA 1224
*A+ C*RS +D YARR SV KK* + G+ T + WN +G KQA
Sbjct: 589 *AQEC*RSIA*CRLDQFYARRTPSV*KK*GMVPGSST*RQNSNWN*VGF*KQA 431
>BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (24%)
Length = 615
Score = 58.5 bits (140), Expect = 2e-08
Identities = 37/146 (25%), Positives = 77/146 (52%)
Frame = +1
Query: 13 PKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQKKT 72
P F+G E + W + +Y+ D LW+ +E+ + L L + K H ++KT
Sbjct: 178 PVFDG--ENYHIWAARIEAYLEAND--LWEAVEEDYEVLPLSDNPTMAQIKNHK--ERKT 339
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQYEL 132
K K R + A++ + ++ +A ++ L YEG +++R +AL L+ ++E+
Sbjct: 340 RKS--KARATLFAAVSEEIFTRIMTIKSAFEIWNFLKTEYEGDERIRGMQALNLIREFEM 513
Query: 133 FKMKDDESIEEMYSRFQTLVSGLQIL 158
KMK+ E+I+E ++ ++ + +++L
Sbjct: 514 QKMKESETIKEYANKLISIANKVRLL 591
>TC93065
Length = 783
Score = 57.0 bits (136), Expect = 6e-08
Identities = 30/115 (26%), Positives = 62/115 (53%)
Frame = +2
Query: 117 KVREAKALMLVHQYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLP 176
K +E ++ L ++E KMK+ E++ E R +V+ +++L + +V KIL LP
Sbjct: 188 KNKENESAKLRREFEALKMKETETVREFSDRISKVVTQIRLLGEDLSDQRVVEKILVCLP 367
Query: 177 SRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKS 231
+ K++++EE K+ + ++V +LV++L+ E + + +KGK+
Sbjct: 368 EMFEAKISSLEENKNFSEITVAELVNALQASEQRRSLRMEENVEGAFLANNKGKN 532
>TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (61%)
Length = 1288
Score = 55.8 bits (133), Expect = 1e-07
Identities = 79/303 (26%), Positives = 122/303 (40%), Gaps = 10/303 (3%)
Frame = +3
Query: 94 KMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQYELFKMKDDESIEEMYSRFQTLVS 153
K S KS K A + + S K + +A V K K +EE+ ++ + L
Sbjct: 108 KSSKKSATKVDAAPVVVSPVKSGKKGKRQAEEEVKAVSAKKQK----VEEVAAKQKAL-- 269
Query: 154 GLQILKKSYVTSDLVSKILRSLPSRWRPKVTAIEEAKDLNTLSVE-DLVSSLKVHEMSLN 212
+++KK +S+ S+ P P + AK N + + S + S +
Sbjct: 270 --KVVKKEESSSEESSESEDEQPVVKAPAPSKKTPAKKGNVKKAQPETTSEESDSDSSSS 443
Query: 213 EHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHS-VKMAMLSNKLEYLA 271
+ E KK S A+PSK + S+ A K SEEE + SDED A+ S A
Sbjct: 444 DEEEVKKPVSKAVPSK---NGSAPAKKVDTSEEEDSEESSDEDKKPAAKAVPSKNGSAPA 614
Query: 272 RKQKKFLSKRNGYKNWKREDQKGCFNC--KKPGHFIA-----DCPDLQKEKSKSRPKKPS 324
+K + + ED+K K G A + D E S KKP+
Sbjct: 615 KKAASDEEDTDESSDEDEEDEKPAAKAVPSKNGSVPAKKADTESSDEDSESSDEEDKKPA 794
Query: 325 FSSSK-FRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESESDSE 383
+SK KK+ ++ E+ D ES + D+DAK + A S+SD E
Sbjct: 795 AKASKNVSAPTKKAASSSDEESDEES-----DEDEDAKPVSKPAAVAKKSKKDSSDSDDE 959
Query: 384 DEN 386
D++
Sbjct: 960 DDD 968
>CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabidopsis
thaliana}, partial (35%)
Length = 837
Score = 42.7 bits (99), Expect = 0.001
Identities = 28/85 (32%), Positives = 44/85 (50%)
Frame = +1
Query: 139 ESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTAIEEAKDLNTLSVE 198
E + +SR ++ + L+ + ++ KILRSL ++ V IEE KDL T+++E
Sbjct: 472 ERVRVYFSRVISISNQLKRNSEKLEDVRIMEKILRSLDPKFEHIVEKIEETKDLETMTIE 651
Query: 199 DLVSSLKVHEMSLNEHESSKKSKSI 223
L SL+ +E E KK K I
Sbjct: 652 KLQGSLQAYE------EKHKKKKDI 708
>AW685995 similar to PIR|I51618|I516 nucleolar phosphoprotein - African
clawed frog, partial (5%)
Length = 516
Score = 40.8 bits (94), Expect = 0.005
Identities = 37/138 (26%), Positives = 64/138 (45%), Gaps = 5/138 (3%)
Frame = +3
Query: 264 SNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKK---PGHF-IADCPDLQKEKSKSR 319
S K++ K+ + + K G K K E++K KK P + + +E S S
Sbjct: 39 SKKVKAEEPKKVEKVEKTKGKKAAKAEEEKKKQQKKKEEKPAPMEVEEDSSSSEESSSSE 218
Query: 320 PKKPSFSSSKFRKQI-KKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSES 378
+ P+ ++ +K KK + E SES S++EE AA + ++ + SE
Sbjct: 219 DEAPAKKAAPAKKAAAKKESSSEEESSSSESESEEEEKPAKKAAAKKESSSEEESSSSEE 398
Query: 379 ESDSEDENEVYSKIPRQE 396
ESD E++NE + ++E
Sbjct: 399 ESDEEEKNEARRR*EQEE 452
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 37.0 bits (84), Expect = 0.065
Identities = 22/70 (31%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = +1
Query: 1231 NQKQS*TCCTRIQSTRRH*LY*NICSSCKIGSNQVTSILCN*SWHNIISNGCQKCFS*W- 1289
+Q QS C R++ T RH L ++C+SC ++ T + + W S+ C+ C W
Sbjct: 145 DQIQSKASCKRLRETTRHRLRRSVCTSCSNRNHMTTLGVSSN*WMLDPSHRCKNCIPKWT 324
Query: 1290 -CH*RRSVCQ 1298
C R S C+
Sbjct: 325 LCGNRNSHCR 354
>TC83119 similar to GP|13357253|gb|AAK20050.1 putative zinc finger protein
{Oryza sativa (japonica cultivar-group)}, partial (16%)
Length = 421
Score = 37.0 bits (84), Expect = 0.065
Identities = 25/102 (24%), Positives = 45/102 (43%), Gaps = 8/102 (7%)
Frame = +3
Query: 218 KKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKKF 277
KK K++ + S +S S++ S S SP + +K
Sbjct: 171 KKEKNLKMSSDSRSRSRSRS--RSRSRSRSP------------------------RIRKI 272
Query: 278 LSKRNGYKN--WKREDQKG------CFNCKKPGHFIADCPDL 311
S R+ Y++ ++R+ +G C NCK+PGH+ +CP++
Sbjct: 273 RSDRHSYRDAPYRRDSSRGFSRDNLCKNCKRPGHYARECPNV 398
>TC85720 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pisum
sativum}, partial (73%)
Length = 968
Score = 35.4 bits (80), Expect = 0.19
Identities = 35/145 (24%), Positives = 58/145 (39%), Gaps = 12/145 (8%)
Frame = +3
Query: 544 AVQSEPEASGSKAKIISKPENLKSKVMTKPDPKTP-KIKILKRSESVPQSLIKPESKILK 602
+ + +P A+ K K ++K +K+K KP K K K+ +++ V KP+ K
Sbjct: 342 SAEKKPAAAKPKTKAVAKVTAVKAKPGPKPKAKAVVKTKVAAKAKPVAA---KPKPAAAK 512
Query: 603 PKDQKNKAVTASEKTIPKGVKPKVLNDHKLLSTYPKVQGRKSKISRINP---------KG 653
PK K A+ K P V+ K T + K ++ P K
Sbjct: 513 PKAPAAKPKAAAAKAKPAAKAKTVVKPAKASRTSTRTTPGKKVVAAKKPAVKKAVAAKKA 692
Query: 654 PMK--IWVPKSELIKTAGVPKGKRE 676
P+K + KS + K +G R+
Sbjct: 693 PVKKAVAAKKSPVKKVVSTKRGGRK 767
>BF644693 homologue to GP|2598599|emb MtN4 {Medicago truncatula}, partial
(79%)
Length = 621
Score = 34.7 bits (78), Expect = 0.32
Identities = 15/49 (30%), Positives = 25/49 (50%), Gaps = 4/49 (8%)
Frame = -3
Query: 683 RQRVFKAYDRRESFVPYPYHERWRRSEVWWQPNWKDH----WYRYYW*F 727
R + + +Y+R + + Y WR +WW+ NW H WY +W*+
Sbjct: 319 RYKWWWSYNRWWLHIRWCYRHNWR*RNMWWKNNWWFHNWRCWYIRWW*W 173
>TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finger protein
{Oryza sativa (japonica cultivar-group)}, partial (96%)
Length = 1286
Score = 34.3 bits (77), Expect = 0.42
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 6/31 (19%)
Frame = +1
Query: 287 WKREDQKG------CFNCKKPGHFIADCPDL 311
++R+ ++G C NCK+PGH++ +CP++
Sbjct: 382 YRRDSRRGFSQDNLCKNCKRPGHYVRECPNV 474
Score = 31.6 bits (70), Expect = 2.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 291 DQKGCFNCKKPGHFIADCPD 310
++K C NC+K GH DCP+
Sbjct: 718 NEKACNNCRKTGHLARDCPN 777
Score = 31.2 bits (69), Expect = 3.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 295 CFNCKKPGHFIADCPD 310
C+NCK+PGH + CP+
Sbjct: 538 CWNCKEPGHMASSCPN 585
Score = 31.2 bits (69), Expect = 3.6
Identities = 22/89 (24%), Positives = 34/89 (37%), Gaps = 8/89 (8%)
Frame = +1
Query: 228 KGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNW 287
K S S++ S S + S D ++ S++ R ++ S+ N KN
Sbjct: 256 KMSSVSRSRSKSRSRSPMDRSRSRSPVDRRIRSERFSHREAPYRRDSRRGFSQDNLCKNC 435
Query: 288 KREDQ--------KGCFNCKKPGHFIADC 308
KR C NC PGH ++C
Sbjct: 436 KRPGHYVRECPNVAVCHNCSLPGHIASEC 522
>TC80683 homologue to GP|8777424|dbj|BAA97014.1
gb|AAF56406.1~gene_id:K9P8.7~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (16%)
Length = 1360
Score = 34.3 bits (77), Expect = 0.42
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Frame = +1
Query: 229 GKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWK 288
GK + K + +E+ D D +E+ S++M++L++ + + K+++ L K
Sbjct: 871 GKKISRGQKGKLKKMKEKYADQD-EEERSIRMSLLASSGKPI--KKEETLPVIETSDKGK 1041
Query: 289 REDQ------KGCFNCKKPGHFIADCPD-----LQKEKSKSRPKKPSFSSS 328
+ D K C+ CKK GH DC + L + + P+ ++S
Sbjct: 1042KSDSGPIDAPKICYKCKKVGHLSRDCKEQPNDLLHSHATSEAEENPNMNAS 1194
>TC76916 MtN4
Length = 1850
Score = 34.3 bits (77), Expect = 0.42
Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 4/43 (9%)
Frame = -3
Query: 689 AYDRRESFVPYPYHERWRRSEVWWQPNWKDH----WYRYYW*F 727
+Y+R + + Y WR +WW+ NW H WY +W*+
Sbjct: 1074 SYNRWWLHIRWCYRHNWR*RNMWWKNNWWFHNWRCWYIRWW*W 946
Score = 31.6 bits (70), Expect = 2.7
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Frame = -3
Query: 702 HERWRRSEVWWQPNWKDHWY---RYYW*F 727
H RW R WW NW WY YYW F
Sbjct: 840 HNRWFRDIWWWFHNW-GFWYVRWMYYWRF 757
>TC84935 similar to PIR|G96631|G96631 probable RNA-binding protein F8A5.17
[imported] - Arabidopsis thaliana, partial (41%)
Length = 552
Score = 33.9 bits (76), Expect = 0.55
Identities = 13/29 (44%), Positives = 15/29 (50%)
Frame = +2
Query: 281 RNGYKNWKREDQKGCFNCKKPGHFIADCP 309
R Y R Q CF C +PGH+ DCP
Sbjct: 431 RGSYGAGDRVGQDDCFKCGRPGHWARDCP 517
>TC85721 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pisum
sativum}, partial (60%)
Length = 995
Score = 33.5 bits (75), Expect = 0.72
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Frame = +1
Query: 551 ASGSKAKI-----ISKPENLKSKVMTKPDPKTPKIKILKRSESVPQSLIKPESKILKPKD 605
ASG K+ +S +KV KP K PK K + + ++ + + KPK
Sbjct: 442 ASGKLVKVKGSFKLSSATKPAAKVKAKPAAK-PKAKAVVKPKTKSVTAKPKAAAATKPKP 618
Query: 606 QKNKAVTASEKTIPKGVKP--KVLNDHKLLSTYPKVQGRK---SKISRINPKGPMKIWVP 660
K+ AS+ KP KV S KV K K++ K P+K P
Sbjct: 619 AATKSKAASKAKTAAKAKPNAKVAKTTARTSPGKKVAAAKPAAKKVAAAKKKAPVKSVKP 798
Query: 661 KSELIKT 667
K++ +K+
Sbjct: 799 KTKTVKS 819
>AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapiens},
partial (2%)
Length = 466
Score = 33.5 bits (75), Expect = 0.72
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Frame = +1
Query: 231 SSKSSKAYKASESEEESPDGDSDEDHSVKMAML-------SNKLEYLARKQKKFLSKRNG 283
SS SS + +S S D DS+ + K A+ ++ ++ + S +
Sbjct: 1 SSSSSSSSSSSSSSSSDSDSDSESEAPAKKAVPVVTKTAPTHAKSASSKMEVDSDSDSDS 180
Query: 284 YKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKS-RPKKPSFSSSKFRKQIKKSLMATW 342
+ + KKP A +KE+S S S SSS S ++
Sbjct: 181 DSSSSSSTSSSVSSVKKPAVSAAKATPAKKEESDSDSDSDSSSSSSSSSSSSSSSSSSSS 360
Query: 343 EDLDSESGSDKEEADDDAKAAMR 365
S S SD EE +++AK ++
Sbjct: 361 SSSSSSSNSDDEEEEEEAKPVVK 429
>TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
HD2-P39 {Glycine max}, partial (47%)
Length = 1233
Score = 33.5 bits (75), Expect = 0.72
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 309 PDLQKEKSK-SRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLV 367
P+ + E+ K S PKK ++ K + D E D +E+DD+ ++ +
Sbjct: 452 PEPKAEELKVSEPKKADAKNAAPAKNAATAKHVKVVDPKDEDSDDDDESDDEIGSSDDEM 631
Query: 368 ATVSSEAVSESESDSEDENE 387
S++ E +SD +DE E
Sbjct: 632 ENADSDSEDEDDSDEDDEEE 691
>TC78733 similar to GP|21592813|gb|AAM64762.1 ids4-like protein {Arabidopsis
thaliana}, partial (83%)
Length = 1260
Score = 33.1 bits (74), Expect = 0.94
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 226 PSKGKSSKSSKAYKASESEE-ESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGY 284
PS +++S E EE E + E+HS ++ M KLE AR+ F R
Sbjct: 841 PSTSTTTESDGLLIPKELEEIEYMEKPLYEEHSYQLCMF*RKLEVEARQLACFHCHRCNQ 1020
Query: 285 KNWKREDQKGCFNCKKPGHFI 305
+WK+ +K F K+P + +
Sbjct: 1021VDWKKHGRKFQFWNKRPSNLL 1083
>TC87244 similar to GP|13374868|emb|CAC34502. putative protein {Arabidopsis
thaliana}, partial (8%)
Length = 856
Score = 33.1 bits (74), Expect = 0.94
Identities = 49/184 (26%), Positives = 73/184 (39%), Gaps = 8/184 (4%)
Frame = +1
Query: 210 SLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGD---SDEDHSVKMAMLSNK 266
SL S+ S LP KG S+ K + + P+ S+ED K L ++
Sbjct: 289 SLRRTLSADMSSKKWLPPKGSSNLIKKISSSENLFQLHPNNSFSSSEEDGEFKETKLDDE 468
Query: 267 LEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIA----DCPDLQKEKSKSRPKK 322
E + + + S + KN K E QKG G F C E SKS P
Sbjct: 469 AEAERERLEIWSSIQ---KNKKEEQQKG-------GSFDTWGSLMCLKTNDEISKSLPPY 618
Query: 323 PSFSSSKFRKQI-KKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESESD 381
+ + + + +KSL E L SE+GSD + + L + S+ + S+
Sbjct: 619 IHPLAKRTKSSLSRKSLEICTESLGSETGSDGPVSSYPPSES--LGSDTGSDGLLSSDPP 792
Query: 382 SEDE 385
SE E
Sbjct: 793 SETE 804
>TC83616 similar to GP|16226661|gb|AAL16226.1 At2g28910/F8N16.20
{Arabidopsis thaliana}, partial (30%)
Length = 854
Score = 32.3 bits (72), Expect = 1.6
Identities = 28/105 (26%), Positives = 40/105 (37%), Gaps = 3/105 (2%)
Frame = +2
Query: 228 KGKSSKSSKAYKASESEEESPD---GDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGY 284
KGK+ K K SEEE D DS+ D ++ A++ R KK KR Y
Sbjct: 530 KGKAEKVDKGSNVESSEEEEDDSESSDSEIDSEIERAIVK-------RSGKKVSEKRGSY 688
Query: 285 KNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSK 329
+ D +D +K K + R KK S + +
Sbjct: 689 RKKDDSDDDE-----------SDKDSDRKRKKRGREKKRSVKTXR 790
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.361 0.158 0.581
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,039,636
Number of Sequences: 36976
Number of extensions: 752037
Number of successful extensions: 9232
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 2975
Number of HSP's successfully gapped in prelim test: 501
Number of HSP's that attempted gapping in prelim test: 5808
Number of HSP's gapped (non-prelim): 4131
length of query: 1684
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1575
effective length of database: 4,984,343
effective search space: 7850340225
effective search space used: 7850340225
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC146649.9