TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146649.7 - phase: 0 /pseudo
         (859 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG448304                                                              160  9e-41
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ...   115  5e-26
AL367832 weakly similar to GP|14091845|gb Putative retroelement ...    49  1e-05
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna...    36  0.055
TC83528                                                                35  0.094
TC83556                                                                33  0.61
BF006363 similar to GP|23496060|gb hypothetical protein {Plasmod...    32  0.80
AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia...    32  1.4
TC91575 similar to GP|20073183|gb|AAH27195.1 Similar to xylosylp...    29  6.7

>BG448304 
          Length = 637

 Score =  160 bits (404), Expect(2) = 9e-41
 Identities = 75/117 (64%), Positives = 88/117 (75%)
 Frame = +2

Query: 68  KDAGVKPPKAHSQEKRRVDKTKYCRFYKCHGHVTDHCIHLKDAIKMLIQ*GRLN*FTKNS 127
           K  G  PPK  +QE +  DKTKYCRF+KCH H+TD CIHLKD I++LIQ GRLN  TKN 
Sbjct: 44  KKLGSNPPKTPTQENKGTDKTKYCRFHKCHRHLTDDCIHLKDTIEILIQRGRLNQLTKNP 223

Query: 128 ETERQAVKLKTDGKEKNPAVAMSVEQLDTFLEHMDTTPYACSWEHFPDANIIVGGTS 184
           E E+Q VKL TD K K+  VAMSVEQLD F+EH+D TPY+C+WE FP AN+I GG S
Sbjct: 224 EPEKQTVKLITDKKNKDIVVAMSVEQLDEFVEHVDITPYSCTWEPFPTANVITGGIS 394



 Score = 26.2 bits (56), Expect(2) = 9e-41
 Identities = 10/21 (47%), Positives = 16/21 (75%)
 Frame = +1

Query: 56 EKILVEISVAELKDAGVKPPK 76
          +KIL  I++ +LK+ G+KP K
Sbjct: 7  KKILA*IAITDLKEVGIKPAK 69


>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
           thaliana, partial (13%)
          Length = 763

 Score =  115 bits (289), Expect = 5e-26
 Identities = 54/117 (46%), Positives = 80/117 (68%)
 Frame = +3

Query: 729 GMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGE 788
           G + +L RF+++S    LPF+ LL    +F W  +CE+A + LK  L+ PPVLS+P+ G+
Sbjct: 408 GRIAALNRFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGD 587

Query: 789 TLYLYLSVSSEAVSGTLNIETQEGQKPTYFTSKALLGPETRYQKIEKVALALVTAAR 845
           TL LY+++SS AVS  L  E +  QKP ++TSK +  PETRY  +EK+A A++T+AR
Sbjct: 588 TLSLYIAISSTAVSSVLIREDRGEQKPIFYTSKRMTDPETRYPTLEKMAFAVITSAR 758


>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
           sativa}, partial (2%)
          Length = 384

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 25/96 (26%), Positives = 46/96 (47%)
 Frame = -1

Query: 443 KLGKGIPEHARAHLIACLWLNTDLFARSITDMPDIDPSVACHQLTVSPSASVVAQRRKKQ 502
           K+G  + E  +  +   L    D+FA S  DMP +DP +  H++   P    V  + ++ 
Sbjct: 303 KVGAALEEGVKRKIFQLLREYLDIFACSYEDMPGLDPKIVEHRIPTKPECPPVR*KLRRT 124

Query: 503 FPEKAEGTEKFVKDLAEEKFIAEAKYTTWLSNILLV 538
            P+ A   +  V+   +  F+   +Y  W++NI+ V
Sbjct: 123 HPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPV 16


>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
            alternata}, partial (21%)
          Length = 1540

 Score = 36.2 bits (82), Expect = 0.055
 Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
 Frame = +1

Query: 737  FVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLSV 796
            F+   ++   P   L +K+  F W  E E A   LK   +  PVL   D      +    
Sbjct: 1198 FIPGYSEITEPLTRLTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTTVETDC 1377

Query: 797  SSEAVSGTLNIETQEG-QKPTYFTSKALLGPETRYQKIEKVALALVTAAR 845
            S  A+ G L  E   G   P  F S+ L   E  Y   +K  LA+    R
Sbjct: 1378 SGFALGGVLTQEDGTGAAHPVAFHSQRLSPAEYNYPIHDKELLAVWACLR 1527


>TC83528 
          Length = 555

 Score = 35.4 bits (80), Expect = 0.094
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 304 GDGNRTKTIKIPFLVIEV---TFLYNCIIGMTGLVQLGAVC*TAHLKLKY 350
           G G  TKTIK+ + V+E      +YN ++G   L  L AV   A   +KY
Sbjct: 390 GKGENTKTIKVRYFVVESPPSVSIYNVVLGWPSLKDLKAVLSVAEFTIKY 539


>TC83556 
          Length = 842

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
 Frame = +1

Query: 125 KNSETERQAVKLKTD-GKEKNPAVAMSVEQ---LDTFLEHMDTTPYACSWEHFPDANIIV 180
           K +++ + A K K++  K+K   V +S+ +    + FL  M+ +  AC         I+ 
Sbjct: 427 KATDSNKAAAKEKSEESKDKGLQVPISITKQ*DFNIFLAIMEMSNNACI--------ILD 582

Query: 181 GGTSTLSLGSMKRKFEELLSVNHLVH 206
           GG    ++G  KRKFEE++ +   VH
Sbjct: 583 GGLCHKNMGFNKRKFEEMMCIT*WVH 660


>BF006363 similar to GP|23496060|gb hypothetical protein {Plasmodium
           falciparum 3D7}, partial (0%)
          Length = 583

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -1

Query: 80  QEKRRVDKTKYCRFYKCHGHVTDHCIH---LKDAIK 112
           +E    D +KYCRF++C G+ T+ C     +K++IK
Sbjct: 526 KETSWTDISKYCRFHRCTGYDTNDCFQ*EAIKESIK 419


>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana
           chromosome II BAC F26H6; putative retroelement pol
           polyprotein, partial (1%)
          Length = 488

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/37 (37%), Positives = 22/37 (58%)
 Frame = +1

Query: 314 IPFLVIEVTFLYNCIIGMTGLVQLGAVC*TAHLKLKY 350
           I F V+++   Y+C++G   +   GAV  T H KLK+
Sbjct: 1   ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKF 111


>TC91575 similar to GP|20073183|gb|AAH27195.1 Similar to xylosylprotein
           beta1 4-galactosyltransferase  polypeptide 7
           (galactosyltransferase I), partial (4%)
          Length = 722

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 13/40 (32%), Positives = 20/40 (49%)
 Frame = -3

Query: 398 YSGVQPDRSRSTLHKVIVERAEEGKQGPTQRGNTSPFGDD 437
           YSG+ P+      +KVI   +E+G  GPT+      +  D
Sbjct: 414 YSGIDPNLKEINPNKVIPTLSEQGLAGPTEASQVGSYSLD 295


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.335    0.146    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,736,323
Number of Sequences: 36976
Number of extensions: 379646
Number of successful extensions: 2679
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 1623
length of query: 859
length of database: 9,014,727
effective HSP length: 104
effective length of query: 755
effective length of database: 5,169,223
effective search space: 3902763365
effective search space used: 3902763365
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 63 (28.9 bits)