BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146632.4 - phase: 0
(1038 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 208 8e-54
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 198 8e-51
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 164 2e-40
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 161 1e-39
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 132 2e-39
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 145 1e-34
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 142 7e-34
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 135 6e-32
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 127 2e-29
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 87 6e-24
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 104 2e-22
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 102 6e-22
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 97 2e-20
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 59 8e-20
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 86 6e-17
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 75 1e-13
BI272602 GP|11602812|db avenaIII {Gallus gallus}, partial (3%) 74 2e-13
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 72 8e-13
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 71 2e-12
BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F... 55 5e-12
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 208 bits (530), Expect = 8e-54
Identities = 110/231 (47%), Positives = 142/231 (60%), Gaps = 1/231 (0%)
Frame = +1
Query: 498 VTRSQHGIFKPKRQLNLNTSVPRSPLPRNPVSA-LRDPNWKMAMDDEFNALIKNKTWELV 556
+TR++ G KPK L P P++ + L DP W AM E+ ALI NKTW+LV
Sbjct: 1 ITRTKTGKLKPKVFLT-------EPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDLV 159
Query: 557 PRPPDVNVIRSMWIFTHKEKSDGVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRT 616
P PP I W++ KE DG ++KARLV G +Q +G D ETFSPV+KP TIR
Sbjct: 160 PLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRL 339
Query: 617 VLSLALSKAWSIHQLDVKNAFLHGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQA 676
+L++A++ W I Q+D+ NAFL+G L+E VYM QP GF N + VC L KSLYGLKQA
Sbjct: 340 ILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQPQGFEAAN-KSLVCKLNKSLYGLKQA 516
Query: 677 PRAWYKRFADYVSTIGFSHSTSDHSLFIYRKGTAMAYILLYVDDIILTASS 727
PRAWY+ GF+ S D SL IY + A Y+ +YVDDI++T SS
Sbjct: 517 PRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSS 669
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 198 bits (504), Expect = 8e-51
Identities = 103/240 (42%), Positives = 147/240 (60%)
Frame = +2
Query: 663 VCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDHSLFIYRKGTAMAYILLYVDDII 722
VC L+KS+YGLKQA R WY + ++ + + G+ S+SD SLF K ++ +L+YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 723 LTASSDALRVTIISLLSTEFAMKDLGSLHYFLGIAVTHHTGGLFLSQRKYAAEIIERAGM 782
L + + + L F +KDLGSL YFLG+ V G+ L+QRKY E++E +G
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 783 AACKSSSTPVDTKPKLSANSSAPHADPSHYRSLAGALQYLTFTRPDIAYAVQQVCLFMHD 842
A KS+ TP D KL + S + D + YR L G L YLT TRPDI++AVQQ+ F+
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 843 PREEHMHALKRIVRYIQGTLDHGLHLYPSSTSTLISYTDADWGGCPDTRRSTSGYCVFLG 902
P++ H A R+++Y++ GL +S L S+ D+DW CP TR+S +GY VFLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 164 bits (414), Expect = 2e-40
Identities = 80/217 (36%), Positives = 126/217 (57%)
Frame = +1
Query: 756 IAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHYRSL 815
+ V + G+++ QRKY +++ER GM S P+ + KL + + D + Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 816 AGALQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTST 875
G L YL TRPD+ Y + + FM+ P E HMHA+KR++RY+ GT++ G+ + +
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 876 LISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSES 935
L +YTD+D+ G D R+STSGY L +SWS+K+Q ++ S+ +AE+ A +S
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 936 CWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQH 972
W+R +L +L + +YCDN S I LS NPV H
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 161 bits (408), Expect = 1e-39
Identities = 88/192 (45%), Positives = 115/192 (59%)
Frame = -1
Query: 512 LNLNTSVPRSPLPRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIF 571
+NLN + +PR+ A+ D WK ++ E A+IKN TW P + S WIF
Sbjct: 582 VNLN----ENHIPRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIF 415
Query: 572 THKEKSDGVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQL 631
T K K+DG ER K RLV G T G D ETF+PV K TIR VLSLA++ W + Q+
Sbjct: 414 TIKYKADGSIERKKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQM 235
Query: 632 DVKNAFLHGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTI 691
DVKNAFL GEL++ VYM+ P G +V LKK++YGLKQ+PRAWY + + ++
Sbjct: 234 DVKNAFLQGELEDEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGR 55
Query: 692 GFSHSTSDHSLF 703
GF S DH+LF
Sbjct: 54 GFRKSELDHTLF 19
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 132 bits (332), Expect(2) = 2e-39
Identities = 63/142 (44%), Positives = 94/142 (65%)
Frame = -2
Query: 580 VFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFLH 639
V R K++LV G Q+ G+D E FSPV + IR +++ A + ++Q+DVK+AF++
Sbjct: 427 VITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFIN 248
Query: 640 GELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSD 699
G+LKE V++ QP GF D +PNHV L K+LYGLKQAPRAWY+R + ++ GF D
Sbjct: 247 GDLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKID 68
Query: 700 HSLFIYRKGTAMAYILLYVDDI 721
++LF+ ++ + I +YVDDI
Sbjct: 67 NTLFLLKRE*ELLIIQVYVDDI 2
Score = 49.7 bits (117), Expect(2) = 2e-39
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = -3
Query: 524 PRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHK 574
P+N ALRD +W +M +E + ++K W LVPRP VI + W+F +K
Sbjct: 585 PKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRNK 433
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 145 bits (365), Expect = 1e-34
Identities = 90/253 (35%), Positives = 127/253 (49%), Gaps = 5/253 (1%)
Frame = +1
Query: 156 HSCSLGKHIKLPFVSSNSCTIMPFDIIHSDIW-TSPVLSSSGHRYYVLFVDDYSNFLWTF 214
H G K+ F ++ T D IHSD+W S V S G RY + +DD+ +W +
Sbjct: 28 HLLFFGNRKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVY 207
Query: 215 PLSKKSQVFSIFLSFRTFIRTQFEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPH 274
L K++ F F +R + TQ + VK + DN EF + F EFC +G+A + P
Sbjct: 208 FLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPR 387
Query: 275 TSSQNGKAERKIRTINNIIRTLLVHASL--PPSFWHHALQMATYLINILPNKQLAYQSPL 332
QNG AER IRT+ R +L +A L W A A +L+N P+ L ++ P
Sbjct: 388 NPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPE 567
Query: 333 KILYQKEPSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVFLGYPSNHRSYK--CYDLSS 390
I YS+LR+FGC Y L KL R+ C+FL Y S + Y+ C D S
Sbjct: 568 DIWSGNLVDYSNLRIFGCPAYAL---VNDGKLAPRAGECIFLSYASESKGYRLWCSDPKS 738
Query: 391 RKIIISRHVIFDE 403
+K+I+SR V F+E
Sbjct: 739 QKLILSRDVTFNE 777
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 142 bits (358), Expect = 7e-34
Identities = 89/247 (36%), Positives = 126/247 (50%), Gaps = 9/247 (3%)
Frame = +3
Query: 530 ALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKEKSDGVFERYKARLV 589
A++ W+ +M++E A +N TWEL I WIF K +G E+YKARLV
Sbjct: 60 AVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIEKYKARLV 239
Query: 590 GDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKETVYMH 649
G +QQ GVD E F+PV + TIR V++LA Q+ + K M
Sbjct: 240 AKGYSQQYGVDYTEVFAPVARWDTIRMVIALAA-------QIKRDGVCIS*M*KAHSCME 398
Query: 650 QPMGFRDPNLPNHVCL--------LKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDHS 701
M R L NH + +K++LYGLKQAPRAWY R Y + GF +H+
Sbjct: 399 N*M--RKFLLINHRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCPYEHT 572
Query: 702 LFI-YRKGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHYFLGIAVTH 760
LF+ +G + I LYVDD+I + + + + EF M DLG +HYFLG+ VT
Sbjct: 573 LFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGVEVTQ 752
Query: 761 HTGGLFL 767
+ G+++
Sbjct: 753 NEKGIYI 773
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 135 bits (341), Expect = 6e-32
Identities = 72/236 (30%), Positives = 123/236 (51%), Gaps = 6/236 (2%)
Frame = -3
Query: 97 SRGDLY------PITTSQAISPSTFAALAPSLWHARLGHPGAPVVDSLRKNKFIECNRAS 150
++GDLY P++ + S+ + +LWHARLGHP ++ + E
Sbjct: 677 TKGDLYMLEKLDPVSNYKCSFTSSSSLNKDALWHARLGHPHGRALNLMLPGVVFENKN-- 504
Query: 151 GSHICHSCSLGKHIKLPFVSSNSCTIMPFDIIHSDIWTSPVLSSSGHRYYVLFVDDYSNF 210
C +C LGKH K F +++ FD+I++D+WT+P LS H+Y+V F+D+ S +
Sbjct: 503 ----CEACILGKHCKNVFPRTSTVYENCFDLIYTDLWTAPSLSRDNHKYFVTFIDEKSKY 336
Query: 211 LWTFPLSKKSQVFSIFLSFRTFIRTQFEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRL 270
W + K +V F +F+ ++ + ++K ++ DNG E+ + F +G+ +
Sbjct: 335 TWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLDHHGILHQT 156
Query: 271 SCPHTSSQNGKAERKIRTINNIIRTLLVHASLPPSFWHHALQMATYLINILPNKQL 326
SCP+T QNG A+RK + + + R+L+ A+ + A YLIN +P K L
Sbjct: 155 SCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---------VSTACYLINWIPTKVL 15
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 127 bits (319), Expect = 2e-29
Identities = 63/146 (43%), Positives = 91/146 (62%)
Frame = +2
Query: 882 ADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSESCWLRNL 941
+DW G +TR+STSGY LG ISWS+K+Q ++ S+AEAEY + +++ WLR +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 942 LLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPS 1001
L +H + +YCDN SAI LS NPV H R+KHI++ H +RE +A EV + + P+
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1002 RYQIADIFTKGLPLVLFEDFRNNLSV 1027
+IADIFTK L + F + L +
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGM 439
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 87.0 bits (214), Expect(2) = 6e-24
Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +1
Query: 675 QAPRAWYKRFADYVSTIGFSHSTSDHSLFIYRKGTAM-AYILLYVDDIILTASSDALRVT 733
Q+PR W+ RF V G+ +DH++FI T A +++YVDDI LT
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 734 IISLLSTEFAMKDLGSLHYFLGIAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTP 791
+ +LL+ EF +KDLG+L YFLG+ V G +SQRKY ++++ M CK+ P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Score = 43.1 bits (100), Expect(2) = 6e-24
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +2
Query: 786 KSSSTPVDTKPKLSANSSAPHADPSHYRSLAGALQYLTFTRPDIAYAVQQVCLFM 840
K S TP+D KL + D Y+ L G L YL+ TRPDI++ V + FM
Sbjct: 338 KPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 104 bits (259), Expect = 2e-22
Identities = 56/128 (43%), Positives = 77/128 (59%), Gaps = 4/128 (3%)
Frame = +1
Query: 826 RPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYP----SSTSTLISYTD 881
RPDI Y+V + FMHDPR+ H+ A RI+RY++GT+++GL L+P S LI Y+D
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGL-LFPYGAKSEVYELICYSD 297
Query: 882 ADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSESCWLRNL 941
+DW G RRSTSGY D ISW K+Q + SS EAEY ++ WL ++
Sbjct: 298 SDWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSV 468
Query: 942 LLELHCPI 949
+ EL C +
Sbjct: 469 IKELKCEV 492
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 102 bits (255), Expect = 6e-22
Identities = 56/164 (34%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Frame = +1
Query: 850 ALKRIVRYIQGTLDHGLHLYPSSTS--TLISYTDADWGGCPDTRRSTSGYCVFLGDNLIS 907
ALK +++Y+ +L L ++ L Y DAD+ G DTR+S SG+ L IS
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 908 WSAKRQATLSRSSAEAEYRGVANVVSESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSG 967
W A +Q+ ++ S+ +AEY V ++ WL+ ++ EL ++ ++CD+ SAI+L+
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGI-TQEYVKIHCDSQSAIHLAN 360
Query: 968 NPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIADIFTK 1011
+ V H+RTKHI++ +H +R+ + E+ V + S AD+FTK
Sbjct: 361 HQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 97.4 bits (241), Expect = 2e-20
Identities = 43/90 (47%), Positives = 63/90 (69%)
Frame = -2
Query: 314 ATYLINILPNKQLAYQSPLKILYQKEPSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVF 373
A YLIN +P + L Q+P ++L Q++PS +++RVFGCLCY L P NKL+ARS +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 374 LGYPSNHRSYKCYDLSSRKIIISRHVIFDE 403
+GY + + YKCYD +R++++SR V F E
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIE 435
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 58.9 bits (141), Expect(2) = 8e-20
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +3
Query: 934 ESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGE 993
E+ W++ L+ EL + + VYCD+ SA++++ NP H RTKHI + H VRE V G
Sbjct: 249 EAIWMQRLMEELGHKQEQIT-VYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGS 425
Query: 994 VRVLHVPSRYQIADIFTKGL 1013
V + + + +AD TK +
Sbjct: 426 VDMQKIHTNDNLADAMTKSI 485
Score = 57.4 bits (137), Expect(2) = 8e-20
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +1
Query: 851 LKRIVRYIQGTLDHGLHLYPSSTSTLISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSA 910
+KRI+RYI+GT + + S T+ Y D+D+ G D R+ST+GY L +SW +
Sbjct: 1 VKRIMRYIKGTSGVAV-CFGGSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 911 KRQATLSRSSAEAEY 925
K Q ++ S+ EAEY
Sbjct: 178 KLQTVVALSTTEAEY 222
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 86.3 bits (212), Expect = 6e-17
Identities = 44/114 (38%), Positives = 63/114 (54%)
Frame = +1
Query: 274 HTSSQNGKAERKIRTINNIIRTLLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLK 333
HT QNG AER RT+ R +L A + SFW A++ A Y+IN P+ + ++P++
Sbjct: 82 HTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPME 261
Query: 334 ILYQKEPSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVFLGYPSNHRSYKCYD 387
+ K YS L VFGC Y ++ S KL +S C+FLGY N + Y +D
Sbjct: 262 MWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 75.5 bits (184), Expect = 1e-13
Identities = 41/97 (42%), Positives = 56/97 (57%)
Frame = +2
Query: 549 KNKTWELVPRPPDVNVIRSMWIFTHKEKSDGVFERYKARLVGDGKTQQVGVDCGETFSPV 608
+ +T +LV +P V I WI+ K DG +YKARLV G +Q G+D E F+PV
Sbjct: 47 QKQTLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPV 226
Query: 609 VKPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKET 645
V+ TI +L+LA + IH +DVK AFL+G T
Sbjct: 227 VRIETI*LLLALAATNGC*IHHIDVKIAFLNGHFVGT 337
>BI272602 GP|11602812|db avenaIII {Gallus gallus}, partial (3%)
Length = 488
Score = 74.3 bits (181), Expect = 2e-13
Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Frame = +1
Query: 454 TTQPTTPEEQHA------HSPPSSSPNPSPSTTATPSPPYQPTPISVPKP---------V 498
T+ P++P SP S + N + T +P+PP P P + P +
Sbjct: 16 TSSPSSPNSNEVAQNIQISSPASPTSNELANITTSPTPPPPPPPTARPHNNHTTNVGGII 195
Query: 499 TRSQHGIFKPKRQLNLNTSVPRSPL-PRNPVSALRDPNWKMAMDDEFNALIKNKTWELVP 557
TRSQ+ I K ++LNL+ P P+ P N ALRD +W+ M DEF+AL N TW+LV
Sbjct: 196 TRSQNNIVKTIKKLNLHVR-PLCPIEPSNITQALRDHDWRSIMQDEFDALQNNNTWDLVS 372
Query: 558 RPPDVNVIRSMWIFTHKEKS 577
R N++ F+++ KS
Sbjct: 373 RSFAQNLVGCKLGFSYQTKS 432
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse
transcriptase homolog - rape retrotransposon copia-like
(fragment), partial (84%)
Length = 249
Score = 72.4 bits (176), Expect = 8e-13
Identities = 39/87 (44%), Positives = 54/87 (61%), Gaps = 5/87 (5%)
Frame = -1
Query: 641 ELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDH 700
EL+E +YM QP GF P +HVC L+KSLYGLKQ+PR WYKRF Y S S +T+
Sbjct: 249 ELEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSYRS----SWATTGV 82
Query: 701 SLFIYR-----KGTAMAYILLYVDDII 722
+ + + + Y++LYVDD++
Sbjct: 81 LMTVVST*TR*RMSRYIYLVLYVDDML 1
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 70.9 bits (172), Expect = 2e-12
Identities = 36/80 (45%), Positives = 51/80 (63%)
Frame = +2
Query: 948 PIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIAD 1007
PI ++ L+ CD +SA YL+ NPV H R KHI +DIH VR+ V +G+++V HV + Q+AD
Sbjct: 2 PISQSGLLRCDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLAD 181
Query: 1008 IFTKGLPLVLFEDFRNNLSV 1027
TK L + RN + V
Sbjct: 182 CLTKPLSKSRHQLLRNKIGV 241
>BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (5%)
Length = 721
Score = 55.1 bits (131), Expect(2) = 5e-12
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = -3
Query: 925 YRGVANVVSESCWLRNLLLELHCPIRKASLVYCDNVSAI-YLSGNPVQHQRTKHIEMDIH 983
YR + + + E WL LL +L K +++YCDN SA +++ N +RTKHIE+D H
Sbjct: 374 YRSI*STICEIKWLTYLLNDLKFTFIKPAMLYCDNQSAARHIAANSSFLERTKHIELDCH 195
Query: 984 SVREKVARGEVRVLHVPS 1001
VR K+ +LH+ S
Sbjct: 194 IVRVKLQLKLFHILHILS 141
Score = 34.7 bits (78), Expect(2) = 5e-12
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 883 DWGGCPDTRRSTSGYCVFLGDNLISWSA 910
D C DT +S S +C+FLGD+LI W +
Sbjct: 486 D*SSCLDT*KSISYFCIFLGDSLICWKS 403
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,393,153
Number of Sequences: 36976
Number of extensions: 701569
Number of successful extensions: 10298
Number of sequences better than 10.0: 528
Number of HSP's better than 10.0 without gapping: 6075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7990
length of query: 1038
length of database: 9,014,727
effective HSP length: 106
effective length of query: 932
effective length of database: 5,095,271
effective search space: 4748792572
effective search space used: 4748792572
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146632.4