BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146588.6 - phase: 0 /pseudo
(670 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC83407 similar to GP|17385678|dbj|BAB78631. putative co-repress... 222 4e-58
AW775273 similar to PIR|T51447|T5 transcription regulator-like p... 212 3e-55
BE326062 similar to GP|17385678|db putative co-repressor protein... 149 1e-47
BE205344 similar to PIR|T00649|T0 hypothetical protein F3I6.12 -... 173 2e-43
AI737486 similar to GP|6094552|gb unknown protein {Arabidopsis t... 122 3e-28
BF633689 similar to GP|9945050|gb Similar to Arabidopsis chromos... 119 3e-27
BF648188 similar to GP|21903805|gb| hypothetical protein {Strept... 100 3e-21
TC93631 similar to EGAD|119721|127958 hypothetical protein F54D1... 90 2e-18
AW693766 similar to GP|16611746|gb| putative glycosyl transferas... 49 5e-06
BE325350 weakly similar to GP|13702821|gb| putative snRNP protei... 43 4e-04
TC77946 homologue to GP|10334491|emb|CAC10207. putative splicing... 42 6e-04
TC77947 homologue to GP|10334491|emb|CAC10207. putative splicing... 41 0.001
TC88447 similar to GP|21593015|gb|AAM64964.1 unknown {Arabidopsi... 41 0.002
TC78611 similar to GP|15450599|gb|AAK96571.1 AT5g17440/K3M16_10 ... 40 0.004
BQ149938 similar to GP|21166135|gb| hypothetical protein {Dictyo... 39 0.008
TC92431 homologue to PIR|H88465|H88465 protein B0244.3 [imported... 38 0.014
BQ137234 similar to EGAD|35719|3709 hypothetical protein {Burkho... 38 0.014
TC79918 similar to PIR|T06671|T06671 hypothetical protein T17F15... 37 0.019
AW560495 similar to PIR|H84748|H847 hypothetical protein At2g337... 36 0.042
BI273272 33 0.35
>TC83407 similar to GP|17385678|dbj|BAB78631. putative co-repressor protein
{Oryza sativa (japonica cultivar-group)}, partial (15%)
Length = 921
Score = 222 bits (565), Expect = 4e-58
Identities = 139/239 (58%), Positives = 156/239 (65%), Gaps = 20/239 (8%)
Frame = +3
Query: 427 GISNKDVSIPKVSLSKDK----------TSM*ESL*MNWTFLTVNNVLPATVSYPKIQKT 476
GISNKDVSIPKVSLSKDK S E ++ L N +P QKT
Sbjct: 78 GISNKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPLAS-----QKT 242
Query: 477 ELGAKVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDML---------LES 527
ELGAKVLNDHWVSVTSGSEDYSFKHMRKNQYEES L+++ +
Sbjct: 243 ELGAKVLNDHWVSVTSGSEDYSFKHMRKNQYEESXV*MXKTT-GLNLICC*SL*MQQVRK 419
Query: 528 INATSKKVEEI-IEKVNDDIIPGDIPIRIEEHLSALNLRCIERLYGDHGLDVMEVLKKNA 586
+ + KK+ I +++ ++ + I L ALN + G DVMEVLKKNA
Sbjct: 420 LKRS*KKLMMI*FQEIFQFVLRSIYQL*I---LGALNDYMVTM-----GFDVMEVLKKNA 575
Query: 587 SLALPVILTRLKQKQEEWARCREDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTK 645
SLALPVILTRLKQKQEEWARCREDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTK
Sbjct: 576 SLALPVILTRLKQKQEEWARCREDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTK 752
Score = 155 bits (392), Expect = 5e-38
Identities = 103/190 (54%), Positives = 113/190 (59%), Gaps = 15/190 (7%)
Frame = +2
Query: 402 KDRDRGRDDGVKERDRELRERDKST-----------GISNKDVSIPKVSLSKDKTSM*ES 450
KDRDRGRDDGVKERDRELRERDKST G+S + K +*
Sbjct: 2 KDRDRGRDDGVKERDRELRERDKSTWNFQQGCLYS*GVSKQGQVCRKAYK*TGPF*L*T- 178
Query: 451 L*MNWTFLTVNNVLPATVSYPK----IQKTELGAKVLNDHWVSVTSGSEDYSFKHMRKNQ 506
M + LP T+S P+ Q E N + + H +K+
Sbjct: 179 --MYSQLPSPTQKLPNTIS*PEN*TWRQSIE*SLGFCNVRK*GL------FL*THAQKSV 334
Query: 507 YEESLFRCEDDRFELDMLLESINATSKKVEEIIEKVNDDIIPGDIPIRIEEHLSALNLRC 566
E EDDRFELDMLLESINATSKKVEEIIEKVNDDIIPGDIPIRIEEHLSALNLRC
Sbjct: 335 *REXCLDAEDDRFELDMLLESINATSKKVEEIIEKVNDDIIPGDIPIRIEEHLSALNLRC 514
Query: 567 IERLYGDHGL 576
IERLYGDHGL
Sbjct: 515 IERLYGDHGL 544
>AW775273 similar to PIR|T51447|T5 transcription regulator-like protein -
Arabidopsis thaliana, partial (11%)
Length = 689
Score = 212 bits (540), Expect = 3e-55
Identities = 108/158 (68%), Positives = 125/158 (78%)
Frame = +1
Query: 5 QKLTTNDALSYLKAVREMFQNDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDL 64
+KLTT DALSYLK V+ F + KEKYD FL+VMKDFKAQ+ DT GVI VKELFKGH +L
Sbjct: 151 RKLTTIDALSYLKEVKNTFPDQKEKYDMFLQVMKDFKAQKTDTHGVIAAVKELFKGHNNL 330
Query: 65 ILGFNTFLPKGYAITLPSDDEQPLQKKPVEFEEAINFVGKIKNRFQGNDRVYKTFLDILN 124
I GFN +LPKG+ I L D+++ QKK VEFE+AI+FVGKIKNRFQ + VYK+FLDILN
Sbjct: 331 IYGFNAYLPKGHEIRL--DEDEASQKKKVEFEDAISFVGKIKNRFQNEEHVYKSFLDILN 504
Query: 125 MYRKELKPITAVYQEVSALFQDHGDLLEEFTHFLPDTS 162
MYR E K IT VY EV+ LF+DH DLLEEFT FLPD S
Sbjct: 505 MYR*EHKTITEVYSEVATLFKDHNDLLEEFTRFLPDNS 618
>BE326062 similar to GP|17385678|db putative co-repressor protein {Oryza
sativa (japonica cultivar-group)}, partial (1%)
Length = 632
Score = 149 bits (376), Expect(2) = 1e-47
Identities = 86/158 (54%), Positives = 112/158 (70%), Gaps = 5/158 (3%)
Frame = +2
Query: 217 DRGVMRTDKEQRRR-EREKDRREERDRRERERDDRDYDNDG--NLERLPHKKKSVHRATD 273
D G +R +KE++RR E+EKDR+E+R RRERERD RDY++D + ERL HK+KS H+A D
Sbjct: 11 DGGSLRAEKERKRRMEKEKDRKEDRGRRERERDYRDYEHDRGRDRERLSHKRKSDHKAED 190
Query: 274 PGTAEPLHDADEKLDLLPNSSTCEDKSSLKSLCSPVLAFLEKVKEKLKNPDDYQEFLKCL 333
G AEPL DAD+ N T + LAF +KVKE+L+NP DYQEFLKC+
Sbjct: 191 SG-AEPLLDADQ------NFGTQNQE----------LAFCDKVKERLQNPGDYQEFLKCV 319
Query: 334 HIYSREIITRQELLALVG--DLLGKYADIMEGFDDFVT 369
HIY++EIITRQEL +LVG LLG Y D+ME F++F++
Sbjct: 320 HIYNKEIITRQELQSLVGGCGLLGDYPDLMESFNEFLS 433
Score = 59.3 bits (142), Expect(2) = 1e-47
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Frame = +3
Query: 367 FVTQCEKNEG-FLAGVMNKKSLWNEGHGQKPLKVEEKDRDRGRDDG 411
F Q EKN G FLAGVMN+KSLW EG G KP+ E++DRDR D G
Sbjct: 426 FCLQAEKNGGGFLAGVMNRKSLWIEGRGLKPMNAEQRDRDRDDDRG 563
>BE205344 similar to PIR|T00649|T0 hypothetical protein F3I6.12 - Arabidopsis
thaliana, partial (8%)
Length = 559
Score = 173 bits (438), Expect = 2e-43
Identities = 82/110 (74%), Positives = 99/110 (89%)
Frame = +2
Query: 3 GGQKLTTNDALSYLKAVREMFQNDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHK 62
G QKLTTNDAL+YLKAV+++FQ+ KEKY++FLEVMKDFKAQR+DT GVIERVKELF+GH+
Sbjct: 224 GSQKLTTNDALAYLKAVKDIFQDKKEKYEDFLEVMKDFKAQRVDTDGVIERVKELFRGHR 403
Query: 63 DLILGFNTFLPKGYAITLPSDDEQPLQKKPVEFEEAINFVGKIKNRFQGN 112
DLILGFNTFLPKG+ ITL S+DEQP KK VEF+EA+++V IK RFQG+
Sbjct: 404 DLILGFNTFLPKGHEITLSSEDEQPQPKKKVEFDEAMSYVNTIKTRFQGD 553
>AI737486 similar to GP|6094552|gb unknown protein {Arabidopsis thaliana},
partial (9%)
Length = 473
Score = 122 bits (307), Expect = 3e-28
Identities = 76/176 (43%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Frame = +3
Query: 314 EKVKEKLKNPDDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADIMEGFDDFVTQCEK 373
+KVKEKL + +DYQ FLKCL+I+ II + +L LV DLLGK++D+M F+DF+ +CE
Sbjct: 6 DKVKEKLSSAEDYQTFLKCLNIFGNGIIKKNDLQNLVTDLLGKHSDLMSEFNDFLERCEN 185
Query: 374 NEGFLAGVMNKKSLWNEGHGQKPLKVEEKDRDRGRDDGVKERDRELRERDKSTGISNKDV 433
+GFLAGVM+KK L +GH + K+E+K+ R DG KE++ R ++K G
Sbjct: 186 IDGFLAGVMSKKPLAGDGHLSRSSKLEDKEH-RRETDGGKEKE---RYKEKYMG-----K 338
Query: 434 SIPKVSLSKDKTSM*ESL*MNWTFLTVNNVLPATVSYPKI-QKTELGAKVLNDHWV 488
SI ++ LS K +LPA P Q++ELGA VLNDHWV
Sbjct: 339 SIQELDLSDCKRCS-----------PSYRLLPADYPIPTASQRSELGAHVLNDHWV 473
Score = 30.0 bits (66), Expect = 3.0
Identities = 17/55 (30%), Positives = 27/55 (48%)
Frame = +3
Query: 104 KIKNRFQGNDRVYKTFLDILNMYRKELKPITAVYQEVSALFQDHGDLLEEFTHFL 158
K+K + + Y+TFL LN++ + + V+ L H DL+ EF FL
Sbjct: 9 KVKEKLSSAED-YQTFLKCLNIFGNGIIKKNDLQNLVTDLLGKHSDLMSEFNDFL 170
>BF633689 similar to GP|9945050|gb Similar to Arabidopsis chromosome I BAC
genomic sequence (AC002396); unknown protein {Oryza
sativa}, partial (12%)
Length = 398
Score = 119 bits (299), Expect = 3e-27
Identities = 56/59 (94%), Positives = 57/59 (95%)
Frame = +2
Query: 587 SLALPVILTRLKQKQEEWARCREDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTK 645
SLALPVILTRLKQKQEEWARCR DF KVWAEIYAKNYHKSLDHRSFYFKQQDT+SLSTK
Sbjct: 5 SLALPVILTRLKQKQEEWARCRADFGKVWAEIYAKNYHKSLDHRSFYFKQQDTRSLSTK 181
>BF648188 similar to GP|21903805|gb| hypothetical protein {Streptococcus
pyogenes MGAS315}, partial (17%)
Length = 627
Score = 99.8 bits (247), Expect = 3e-21
Identities = 61/147 (41%), Positives = 79/147 (53%)
Frame = +3
Query: 10 NDALSYLKAVREMFQNDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILGFN 69
+DA +Y AV+ Q EKY EF EVM D++ RID GV RV ELFKGHK LILG N
Sbjct: 213 DDACAYDNAVKSTCQ---EKYSEFAEVMSDYRDGRIDPGGVKARVHELFKGHKHLILGIN 383
Query: 70 TFLPKGYAITLPSDDEQPLQKKPVEFEEAINFVGKIKNRFQGNDRVYKTFLDILNMYRKE 129
+PK Y I LP DE+ V ++A F+ ++K FQ Y FL +++ Y
Sbjct: 384 NIMPKNYEIILPPSDEK------VNRQDATTFLKQVKVVFQDKMEKYYEFLQVIHDYMNL 545
Query: 130 LKPITAVYQEVSALFQDHGDLLEEFTH 156
I V + LF+ H DLL F +
Sbjct: 546 TIDILDVIEIGMKLFKGHVDLLSGFNY 626
Score = 62.4 bits (150), Expect = 5e-10
Identities = 31/65 (47%), Positives = 43/65 (65%)
Frame = +3
Query: 5 QKLTTNDALSYLKAVREMFQNDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDL 64
+K+ DA ++LK V+ +FQ+ EKY EFL+V+ D+ ID VIE +LFKGH DL
Sbjct: 429 EKVNRQDATTFLKQVKVVFQDKMEKYYEFLQVIHDYMNLTIDILDVIEIGMKLFKGHVDL 608
Query: 65 ILGFN 69
+ GFN
Sbjct: 609 LSGFN 623
>TC93631 similar to EGAD|119721|127958 hypothetical protein F54D1.6
{Caenorhabditis elegans}, partial (1%)
Length = 1081
Score = 90.1 bits (222), Expect = 2e-18
Identities = 43/76 (56%), Positives = 53/76 (69%)
Frame = +1
Query: 312 FLEKVKEKLKNPDDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADIMEGFDDFVTQC 371
FLEKVKEK NP+ YQ+FLKCLHIY+RE+ITR EL LV DL GKY D+M F+DF+ Q
Sbjct: 703 FLEKVKEKFSNPEIYQDFLKCLHIYARELITRGELQLLVYDLFGKYTDLMVEFNDFMAQS 882
Query: 372 EKNEGFLAGVMNKKSL 387
EK L + + +
Sbjct: 883 EKKNAKLVKALKGRQI 930
Score = 37.7 bits (86), Expect = 0.014
Identities = 19/43 (44%), Positives = 28/43 (64%), Gaps = 2/43 (4%)
Frame = +2
Query: 193 DKREKTTTLH--ADRDLSVDHPDPELDRGVMRTDKEQRRRERE 233
D R T+H +RDL V+HPDPE+D+G M + E+R ++E
Sbjct: 296 DGRNSDMTIHKKGNRDLIVEHPDPEIDKGSMSAN-EKRDEKKE 421
Score = 37.0 bits (84), Expect(2) = 2e-06
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 360 IMEGFDDFVTQCEKNEGFLAGVMNK 384
+ EGF++F+TQCE NEG V+NK
Sbjct: 604 LWEGFNEFLTQCESNEGLFGHVLNK 678
Score = 32.7 bits (73), Expect(2) = 2e-06
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 327 QEFLKCLHIYSREIITRQ-ELLALVGDLLGKYADIMEG 363
+ F K LH Y I ++ EL +VGDLLGK++D++ G
Sbjct: 501 KNFEKSLHSYRMGTIYKEKELQKMVGDLLGKHSDLVGG 614
>AW693766 similar to GP|16611746|gb| putative glycosyl transferase {Shigella
boydii}, partial (5%)
Length = 656
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Frame = +1
Query: 13 LSYLKAVREMFQNDKEKYDEFLE-------VMKDFKAQRIDTAGVIERVKELFKGHKDLI 65
L +++ V+ +F +E+Y+EF++ +M D + R+ R+K+L KGH LI
Sbjct: 55 LGFVEEVKSVFHGKREEYEEFIKDIDAFKTLMNDHRITRLPVQNFKGRMKKLLKGHNRLI 234
Query: 66 LGFNTFLPKGYAITLP 81
GFN ++ K ITLP
Sbjct: 235 FGFNAYM-KDRRITLP 279
>BE325350 weakly similar to GP|13702821|gb| putative snRNP protein {Oryza
sativa}, partial (6%)
Length = 473
Score = 42.7 bits (99), Expect = 4e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 198 TTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRREERDRRERERDDRDYDND 255
+T + +R D D + DRG R +R R+R+++R +RD R+RER RD + +
Sbjct: 200 STNNNINRSSDSDRRDRDRDRGHDRDSYRERDRDRDRERERDRDNRDRERRHRDRERE 373
Score = 34.7 bits (78), Expect = 0.12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 389 NEGHGQKPLKVEEKDRDRGRDDGVKERDRELRERDKSTGISNK 431
+ GH + + ++DRDR R+ RDRE R RD+ NK
Sbjct: 257 DRGHDRDSYRERDRDRDRERERDRDNRDRERRHRDREREEENK 385
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 401 EKDRDRGRD-DGVKERDRELRERDKSTGISNKD 432
++DRDRG D D +ERDR+ R+R++ N+D
Sbjct: 245 DRDRDRGHDRDSYRERDRD-RDRERERDRDNRD 340
>TC77946 homologue to GP|10334491|emb|CAC10207. putative splicing factor
{Cicer arietinum}, complete
Length = 2061
Score = 42.4 bits (98), Expect = 6e-04
Identities = 25/76 (32%), Positives = 45/76 (58%), Gaps = 3/76 (3%)
Frame = +3
Query: 188 RQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMR--TDKEQ-RRREREKDRREERDRRE 244
R+ + RE+++ H +RD + E ++ V R DKE+ R RE+E++RR++ +E
Sbjct: 327 RERDREHRERSSGRHRERDGERGSREKEREKDVERGGRDKERDREREKERERRDKEREKE 506
Query: 245 RERDDRDYDNDGNLER 260
RER D++ + + ER
Sbjct: 507 RERRDKEREKERA*ER 554
Score = 36.6 bits (83), Expect = 0.032
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Frame = +3
Query: 194 KREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQR--------RREREKDRREERDRRER 245
K T + ++R D +LD G R K R +++R++DR ERDR R
Sbjct: 171 KNTDITDIKSERTYRKHGIDDDLDGGEDRRSKRSRGGDDENGSKKDRDRDRDRERDREHR 350
Query: 246 ERDD-RDYDNDGNL-ERLPHKKKSVHR 270
ER R + DG R ++K V R
Sbjct: 351 ERSSGRHRERDGERGSREKEREKDVER 431
Score = 34.7 bits (78), Expect = 0.12
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 178 RDRSSAMTTGRQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRR 237
R+RSS R REK +R D E ++ R DKE+ + +D+
Sbjct: 348 RERSSGRHRERDGERGSREKEREKDVERGGRDKERDREREKERERRDKEREKERERRDKE 527
Query: 238 EERDRR-ERERDDRD 251
E++R ER+R +R+
Sbjct: 528 REKERA*ERKRGERE 572
Score = 30.4 bits (67), Expect = 2.3
Identities = 27/85 (31%), Positives = 37/85 (42%), Gaps = 25/85 (29%)
Frame = +1
Query: 215 ELDRGVMRTDKEQR-------RREREKDRREERD-----------------RRERERDDR 250
E+ RG+ R + R R RE+ RRE R R ER+R +R
Sbjct: 439 EIRRGIGREKRRGRGEIRKGKRNGREEIRRERRSVPEREKEEKERPRRSMSRPERDRGER 618
Query: 251 DYDN-DGNLERLPHKKKSVHRATDP 274
D++N DG R KK++V DP
Sbjct: 619 DFENRDG--RRFRDKKENVEPEADP 687
Score = 29.3 bits (64), Expect = 5.1
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 401 EKDRDRGRDDGVKERDRELRER 422
+KDRDR RD +ERDRE RER
Sbjct: 300 KKDRDRDRD---RERDREHRER 356
Score = 29.3 bits (64), Expect = 5.1
Identities = 23/80 (28%), Positives = 36/80 (44%), Gaps = 12/80 (15%)
Frame = +3
Query: 193 DKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRREERD------RRERE 246
D+R K + D + S D + DR ++++ RER R ERD +ERE
Sbjct: 252 DRRSKRSRGGDDENGSKKDRDRDRDR-----ERDREHRERSSGRHRERDGERGSREKERE 416
Query: 247 RD------DRDYDNDGNLER 260
+D D++ D + ER
Sbjct: 417 KDVERGGRDKERDREREKER 476
>TC77947 homologue to GP|10334491|emb|CAC10207. putative splicing factor
{Cicer arietinum}, partial (17%)
Length = 742
Score = 41.2 bits (95), Expect = 0.001
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +3
Query: 194 KREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRREERDRRERERDDRDYD 253
+R + + ++RD ++ + E R + + R RERE+ +R RR R R +RD++
Sbjct: 36 ERSRRSKSRSERDREIEREERERSRRSISRSERDREREREE---RDRSRRSRSRSERDFE 206
Query: 254 NDGNLERLPHKKKSVHRATDP 274
+ R KK++V DP
Sbjct: 207 MRDS-RRFREKKETVEPEADP 266
Score = 35.0 bits (79), Expect = 0.093
Identities = 17/44 (38%), Positives = 26/44 (58%)
Frame = +3
Query: 228 RRREREKDRREERDRRERERDDRDYDNDGNLERLPHKKKSVHRA 271
R REREK+R ER RR + R +RD + + E ++S+ R+
Sbjct: 3 REREREKERERERSRRSKSRSERDREIE--REERERSRRSISRS 128
>TC88447 similar to GP|21593015|gb|AAM64964.1 unknown {Arabidopsis
thaliana}, partial (47%)
Length = 1079
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/76 (36%), Positives = 39/76 (50%)
Frame = +2
Query: 178 RDRSSAMTTGRQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRR 237
+D + + R+ D+R + + H DRD D E DR D+++ R EKD
Sbjct: 245 KDYNRGRSPARERDRDRR-RDSHRHRDRDY-----DREYDRDY---DRDRYRLREEKDYG 397
Query: 238 EERDRRERERDDRDYD 253
ER+ RERER DRD D
Sbjct: 398 REREGRERERRDRDRD 445
Score = 38.1 bits (87), Expect = 0.011
Identities = 20/68 (29%), Positives = 34/68 (49%)
Frame = +2
Query: 188 RQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRREERDRRERER 247
RQ +++ + + D + + P+ + +RG R+ +R R+R +D RDR
Sbjct: 167 RQSALEEDFEEEEENEDNEQPAEEPEKDYNRG--RSPARERDRDRRRDSHRHRDRDYDRE 340
Query: 248 DDRDYDND 255
DRDYD D
Sbjct: 341 YDRDYDRD 364
>TC78611 similar to GP|15450599|gb|AAK96571.1 AT5g17440/K3M16_10 {Arabidopsis
thaliana}, partial (91%)
Length = 1636
Score = 39.7 bits (91), Expect = 0.004
Identities = 29/91 (31%), Positives = 43/91 (46%), Gaps = 9/91 (9%)
Frame = +1
Query: 179 DRSSAMTTGRQMHVDK---REKTTTLHADRDLS--VDHPDPELDRGVMRTDKEQRRRERE 233
DR A G ++H+ REK L +R+ S +D D + R + R+RE
Sbjct: 910 DRRLADHFGGKLHLGYMQIREKLAELQEERNKSRKIDRLDDRRSKERSRDRDREPSRDRE 1089
Query: 234 KDRREER----DRRERERDDRDYDNDGNLER 260
+ ER DRR R+RD+R +D D +R
Sbjct: 1090 RGESHERGRDNDRRSRDRDNRHHDRDRGYDR 1182
Score = 33.9 bits (76), Expect = 0.21
Identities = 28/85 (32%), Positives = 44/85 (50%), Gaps = 4/85 (4%)
Frame = +1
Query: 193 DKREKTTTLHADRDLSVDHPDPEL-DRGVMRTDKEQRRREREKDRREERDR---RERERD 248
D+R K + DR+ S D E +RG D ++R R+R+ +R +RDR R+R+RD
Sbjct: 1030 DRRSKERSRDRDREPSRDRERGESHERG---RDNDRRSRDRD-NRHHDRDRGYDRDRDRD 1197
Query: 249 DRDYDNDGNLERLPHKKKSVHRATD 273
YD+ R + +S R+ D
Sbjct: 1198 SSRYDS-----RSRRRSRSRERSRD 1257
>BQ149938 similar to GP|21166135|gb| hypothetical protein {Dictyostelium
discoideum}, partial (5%)
Length = 812
Score = 38.5 bits (88), Expect = 0.008
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 4/38 (10%)
Frame = +1
Query: 227 QRRREREKDRREERDR-RERERD---DRDYDNDGNLER 260
+R RERE++R ER+R RERERD +RD D + ++ER
Sbjct: 13 ERERERERERERERERERERERDRDRERDRDTERDIER 126
Score = 36.6 bits (83), Expect = 0.032
Identities = 20/39 (51%), Positives = 27/39 (68%), Gaps = 1/39 (2%)
Frame = +1
Query: 218 RGVMRTDKEQRRREREKDRREERDR-RERERDDRDYDND 255
RG R + +R RERE++R ER+R R+RER DRD + D
Sbjct: 4 RGRERERERERERERERERERERERDRDRER-DRDTERD 117
Score = 35.4 bits (80), Expect = 0.071
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Frame = +1
Query: 222 RTDKEQRRREREKDRREERDR-RERERD-DRDYDND 255
R + +R RERE++R ERDR RER+RD +RD + +
Sbjct: 22 RERERERERERERERERERDRDRERDRDTERDIERE 129
Score = 31.6 bits (70), Expect = 1.0
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 215 ELDRGVMRTDKEQRRREREKDRREERDRRERERD 248
E +R R + +R RERE+DR ERD R+ ERD
Sbjct: 19 ERERERERERERERERERERDRDRERD-RDTERD 117
>TC92431 homologue to PIR|H88465|H88465 protein B0244.3 [imported] -
Caenorhabditis elegans, partial (73%)
Length = 357
Score = 37.7 bits (86), Expect = 0.014
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 211 HPDPELDRGVMRTDKEQRRREREKDRREERDRRERERD 248
H + E +R R + +R RERE++R ER+R ERER+
Sbjct: 102 HTERERERERERERERERERERERERERERERGERERE 215
Score = 37.4 bits (85), Expect = 0.019
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +2
Query: 211 HPDPELDRGVMRTDKEQRRREREKDRREERDRRERERDDRDYDNDGNLERLPH 263
H E +R R + +R RERE++R ER+R ERER +GN PH
Sbjct: 104 HRKRERERERERERERERERERERERERERERGERER-------EGNYTGSPH 241
Score = 36.6 bits (83), Expect = 0.032
Identities = 17/40 (42%), Positives = 24/40 (59%)
Frame = +1
Query: 211 HPDPELDRGVMRTDKEQRRREREKDRREERDRRERERDDR 250
H E +R R + +R RERE++R ER+R RER+ R
Sbjct: 100 HTQKEREREREREREREREREREREREREREREGRERERR 219
>BQ137234 similar to EGAD|35719|3709 hypothetical protein {Burkholderia
cepacia}, partial (6%)
Length = 1184
Score = 37.7 bits (86), Expect = 0.014
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = +3
Query: 195 REKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRREERDRRERERDDRDYDN 254
R + T HA+ + P E RG RRRER++DR + R R R++D+
Sbjct: 654 RRRARTRHAEARRTTHAPRSEETRG------RARRRERQRDRGQSRSHRRRQKDET--QE 809
Query: 255 DGNLERLPHKKKS 267
+ +R P K+ S
Sbjct: 810 QEHRQREPRKRSS 848
Score = 31.6 bits (70), Expect = 1.0
Identities = 18/74 (24%), Positives = 32/74 (42%)
Frame = +3
Query: 178 RDRSSAMTTGRQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRR 237
R+R+ A T + +R + T +R R T+++ R+ ++ +
Sbjct: 858 RERAHARTARKARGAARRRRARTHGQERAHEQQKTSERRARRKEATERDDRKSADKRQAK 1037
Query: 238 EERDRRERERDDRD 251
EER+ R RER D
Sbjct: 1038EEREERNRERPAND 1079
>TC79918 similar to PIR|T06671|T06671 hypothetical protein T17F15.10 -
Arabidopsis thaliana, partial (39%)
Length = 1269
Score = 37.4 bits (85), Expect = 0.019
Identities = 30/106 (28%), Positives = 47/106 (44%)
Frame = +1
Query: 162 SGAAAAHFASARNPLLRDRSSAMTTGRQMHVDKREKTTTLHADRDLSVDHPDPELDRGVM 221
S ++ AS P DR S + + + K++ TT + D+ + DR
Sbjct: 208 SSSSTTTTASTTAPSDSDRKSQLQSIQNKL--KKKPTTESRVSEKTNRDYSSRDSDRRKR 381
Query: 222 RTDKEQRRREREKDRREERDRRERERDDRDYDNDGNLERLPHKKKS 267
R+ R RER +DR R R RER+ R D D + +R + +S
Sbjct: 382 RS--RSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRS 513
>AW560495 similar to PIR|H84748|H847 hypothetical protein At2g33730
[imported] - Arabidopsis thaliana, partial (3%)
Length = 391
Score = 36.2 bits (82), Expect = 0.042
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = -3
Query: 222 RTDKEQRRREREKDRREERDR-RERERD-DRDYDNDGNLER 260
R D EQR RE ++R+ R+R R+R RD DRDY + +L R
Sbjct: 362 RYDGEQRNREHNEERQSSRNRERDRGRDRDRDYGRERDLSR 240
>BI273272
Length = 315
Score = 33.1 bits (74), Expect = 0.35
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 215 ELDRGVMRTDKEQRRREREKDRREERDR-RERERD 248
E +R R + +R RERE++R ER+R RERER+
Sbjct: 15 ERERERERERERERERERERERERERERERERERE 119
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,601,827
Number of Sequences: 36976
Number of extensions: 228302
Number of successful extensions: 1940
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 1658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of query: 670
length of database: 9,014,727
effective HSP length: 103
effective length of query: 567
effective length of database: 5,206,199
effective search space: 2951914833
effective search space used: 2951914833
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC146588.6