
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146585.11 + phase: 0
(308 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC90837 weakly similar to GP|22202752|dbj|BAC07409. hypothetical... 37 0.010
BI271381 similar to GP|21397269|gb Unknown protein {Oryza sativa... 33 0.18
BQ149701 similar to PIR|G86160|G86 protein F10O3.17 [imported] -... 29 2.0
BG448898 similar to GP|19715622|gb| AT4g37080/C7A10_280 {Arabido... 28 3.4
TC82418 similar to PIR|C86204|C86204 hypothetical protein [impor... 28 5.8
TC84821 weakly similar to GP|17065212|gb|AAL32760.1 Unknown prot... 28 5.8
TC77245 similar to GP|6630556|gb|AAF19575.1| putative alpha-L-ar... 27 7.6
BF520057 similar to SP|Q05753|AKR_ Ankyrin repeat protein (AKRP)... 27 7.6
AL389755 similar to GP|21554158|gb amino acid permease-like prot... 27 9.9
>TC90837 weakly similar to GP|22202752|dbj|BAC07409. hypothetical
protein~similar to Oryza sativa chromosome10
OSJNBa0079H13.17, partial (7%)
Length = 596
Score = 37.0 bits (84), Expect = 0.010
Identities = 30/97 (30%), Positives = 45/97 (45%), Gaps = 11/97 (11%)
Frame = +1
Query: 156 YYLADGIYPS---YPTFVKSIRLPQSE--------PDKLFAKHQESCRKDIERAFGVLQA 204
YYL D YP Y IR QS+ + F + S R IER+FGVL+
Sbjct: 10 YYLVDKGYPDKEGYMVPYPRIRYHQSQFEHEPPTNAQEAFNRAHSSLRSCIERSFGVLKK 189
Query: 205 RFKIIREPARLWDIADLGIIMRSCIILHNMIVEDERD 241
R+KI+ + + + +I+ + LHN I + +D
Sbjct: 190 RWKILNKMPQFSVKTQIDVII-AAFALHNYIRINSQD 297
>BI271381 similar to GP|21397269|gb Unknown protein {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 407
Score = 32.7 bits (73), Expect = 0.18
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 180 PDKLFAKHQESCRKDIERAFGVLQARFKIIR 210
P++LF S R IER FGVL+ RF I++
Sbjct: 134 PEELFNYRHSSLRMTIERCFGVLKNRFPILK 226
>BQ149701 similar to PIR|G86160|G86 protein F10O3.17 [imported] - Arabidopsis
thaliana, partial (26%)
Length = 649
Score = 29.3 bits (64), Expect = 2.0
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 9/107 (8%)
Frame = +1
Query: 190 SCRKDIERAFGVL--QARFKIIREPARLWD-------IADLGIIMRSCIILHNMIVEDER 240
SCR D+ER G+ QA + I P L+ I D I+R I N+ EDE
Sbjct: 256 SCRSDLERRIGLQLDQAILEDILIPTSLYQNNNHSSTIYDTDSIVRIFSIFLNLDEEDED 435
Query: 241 DTYAQRWTDFEQSEGSGSSTQQPYSTEVLPTFANHVRARSELRDPNV 287
D+ + T+ S S +Q +V N++ DPN+
Sbjct: 436 DSRMRDETEMVYDFDSPGSPKQSSILKVSKLLDNYL--AEVALDPNL 570
>BG448898 similar to GP|19715622|gb| AT4g37080/C7A10_280 {Arabidopsis
thaliana}, partial (14%)
Length = 552
Score = 28.5 bits (62), Expect = 3.4
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +2
Query: 177 QSEPDKLFAK--HQESCRKDIERAF----GVLQARFKIIREPARLWDIADLGIIMRSCII 230
Q + DKL K H+E+ RK +ERAF G L R P L +A++ ++ +
Sbjct: 200 QQDVDKLKKKLKHEENIRKALERAFNRPLGAL-PRLPPYLPPYILALLAEVAVLEEEIVW 376
Query: 231 LHNMIVEDERDTY 243
L +V +D Y
Sbjct: 377 LEEKVVHFRQDLY 415
>TC82418 similar to PIR|C86204|C86204 hypothetical protein [imported] -
Arabidopsis thaliana, partial (83%)
Length = 731
Score = 27.7 bits (60), Expect = 5.8
Identities = 13/53 (24%), Positives = 25/53 (46%)
Frame = +2
Query: 136 EQGKTPRVNYFVNQRPYNMTYYLADGIYPSYPTFVKSIRLPQSEPDKLFAKHQ 188
++ P F+ PY T + + ++ YP F K +RL +++P F +
Sbjct: 452 QEAAAPNNILFIENLPYETTGRMLEMLFEQYPGF-KEVRLIEAKPGIAFVNFE 607
>TC84821 weakly similar to GP|17065212|gb|AAL32760.1 Unknown protein
{Arabidopsis thaliana}, partial (31%)
Length = 534
Score = 27.7 bits (60), Expect = 5.8
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +3
Query: 41 YLRAPTQDDLQRILHVSEMRGFPGMIGSIDCMHWEWKNCPKAW 83
+L +L++ H S GF GM DC HW P W
Sbjct: 306 FLNITALSELRKDGHPSSHNGFHGM----DCTHWCVAGVPDTW 422
>TC77245 similar to GP|6630556|gb|AAF19575.1| putative
alpha-L-arabinofuranosidase {Arabidopsis thaliana},
partial (89%)
Length = 2351
Score = 27.3 bits (59), Expect = 7.6
Identities = 15/40 (37%), Positives = 18/40 (44%)
Frame = -3
Query: 93 GTTTVILEAVASHDLWIWHAFFGCPGTLNDINVLDRSPVF 132
GT T + LWI FFGC + I +D S VF
Sbjct: 2130 GTITFMSFPTL*SRLWIGITFFGCEKEFSSIKFVDVSTVF 2011
>BF520057 similar to SP|Q05753|AKR_ Ankyrin repeat protein (AKRP). [Mouse-ear
cress] {Arabidopsis thaliana}, partial (37%)
Length = 632
Score = 27.3 bits (59), Expect = 7.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 104 SHDLWIWHAFFGCP 117
S D W+WHAFF P
Sbjct: 412 SRDNWLWHAFFQLP 371
>AL389755 similar to GP|21554158|gb amino acid permease-like protein
{Arabidopsis thaliana}, partial (36%)
Length = 509
Score = 26.9 bits (58), Expect = 9.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 64 GMIGSIDCMHWEWKNCPKAWEGQFTRGDKGTTT 96
G++ + C+H + NC WE T ++T
Sbjct: 256 GILKGLQCLHCHFHNCSNFWEWHIT*DTSNSST 354
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.324 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,512,850
Number of Sequences: 36976
Number of extensions: 147755
Number of successful extensions: 691
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of query: 308
length of database: 9,014,727
effective HSP length: 96
effective length of query: 212
effective length of database: 5,465,031
effective search space: 1158586572
effective search space used: 1158586572
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146585.11