Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146585.11 + phase: 0 
         (308 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC90837 weakly similar to GP|22202752|dbj|BAC07409. hypothetical...    37  0.010
BI271381 similar to GP|21397269|gb Unknown protein {Oryza sativa...    33  0.18
BQ149701 similar to PIR|G86160|G86 protein F10O3.17 [imported] -...    29  2.0
BG448898 similar to GP|19715622|gb| AT4g37080/C7A10_280 {Arabido...    28  3.4
TC82418 similar to PIR|C86204|C86204 hypothetical protein [impor...    28  5.8
TC84821 weakly similar to GP|17065212|gb|AAL32760.1 Unknown prot...    28  5.8
TC77245 similar to GP|6630556|gb|AAF19575.1| putative alpha-L-ar...    27  7.6
BF520057 similar to SP|Q05753|AKR_ Ankyrin repeat protein (AKRP)...    27  7.6
AL389755 similar to GP|21554158|gb amino acid permease-like prot...    27  9.9

>TC90837 weakly similar to GP|22202752|dbj|BAC07409. hypothetical
           protein~similar to Oryza sativa chromosome10
           OSJNBa0079H13.17, partial (7%)
          Length = 596

 Score = 37.0 bits (84), Expect = 0.010
 Identities = 30/97 (30%), Positives = 45/97 (45%), Gaps = 11/97 (11%)
 Frame = +1

Query: 156 YYLADGIYPS---YPTFVKSIRLPQSE--------PDKLFAKHQESCRKDIERAFGVLQA 204
           YYL D  YP    Y      IR  QS+          + F +   S R  IER+FGVL+ 
Sbjct: 10  YYLVDKGYPDKEGYMVPYPRIRYHQSQFEHEPPTNAQEAFNRAHSSLRSCIERSFGVLKK 189

Query: 205 RFKIIREPARLWDIADLGIIMRSCIILHNMIVEDERD 241
           R+KI+ +  +      + +I+ +   LHN I  + +D
Sbjct: 190 RWKILNKMPQFSVKTQIDVII-AAFALHNYIRINSQD 297


>BI271381 similar to GP|21397269|gb Unknown protein {Oryza sativa (japonica
           cultivar-group)}, partial (2%)
          Length = 407

 Score = 32.7 bits (73), Expect = 0.18
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 180 PDKLFAKHQESCRKDIERAFGVLQARFKIIR 210
           P++LF     S R  IER FGVL+ RF I++
Sbjct: 134 PEELFNYRHSSLRMTIERCFGVLKNRFPILK 226


>BQ149701 similar to PIR|G86160|G86 protein F10O3.17 [imported] - Arabidopsis
           thaliana, partial (26%)
          Length = 649

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 9/107 (8%)
 Frame = +1

Query: 190 SCRKDIERAFGVL--QARFKIIREPARLWD-------IADLGIIMRSCIILHNMIVEDER 240
           SCR D+ER  G+   QA  + I  P  L+        I D   I+R   I  N+  EDE 
Sbjct: 256 SCRSDLERRIGLQLDQAILEDILIPTSLYQNNNHSSTIYDTDSIVRIFSIFLNLDEEDED 435

Query: 241 DTYAQRWTDFEQSEGSGSSTQQPYSTEVLPTFANHVRARSELRDPNV 287
           D+  +  T+      S  S +Q    +V     N++       DPN+
Sbjct: 436 DSRMRDETEMVYDFDSPGSPKQSSILKVSKLLDNYL--AEVALDPNL 570


>BG448898 similar to GP|19715622|gb| AT4g37080/C7A10_280 {Arabidopsis
           thaliana}, partial (14%)
          Length = 552

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = +2

Query: 177 QSEPDKLFAK--HQESCRKDIERAF----GVLQARFKIIREPARLWDIADLGIIMRSCII 230
           Q + DKL  K  H+E+ RK +ERAF    G L  R      P  L  +A++ ++    + 
Sbjct: 200 QQDVDKLKKKLKHEENIRKALERAFNRPLGAL-PRLPPYLPPYILALLAEVAVLEEEIVW 376

Query: 231 LHNMIVEDERDTY 243
           L   +V   +D Y
Sbjct: 377 LEEKVVHFRQDLY 415


>TC82418 similar to PIR|C86204|C86204 hypothetical protein [imported] -
           Arabidopsis thaliana, partial (83%)
          Length = 731

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 13/53 (24%), Positives = 25/53 (46%)
 Frame = +2

Query: 136 EQGKTPRVNYFVNQRPYNMTYYLADGIYPSYPTFVKSIRLPQSEPDKLFAKHQ 188
           ++   P    F+   PY  T  + + ++  YP F K +RL +++P   F   +
Sbjct: 452 QEAAAPNNILFIENLPYETTGRMLEMLFEQYPGF-KEVRLIEAKPGIAFVNFE 607


>TC84821 weakly similar to GP|17065212|gb|AAL32760.1 Unknown protein
           {Arabidopsis thaliana}, partial (31%)
          Length = 534

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 41  YLRAPTQDDLQRILHVSEMRGFPGMIGSIDCMHWEWKNCPKAW 83
           +L      +L++  H S   GF GM    DC HW     P  W
Sbjct: 306 FLNITALSELRKDGHPSSHNGFHGM----DCTHWCVAGVPDTW 422


>TC77245 similar to GP|6630556|gb|AAF19575.1| putative
            alpha-L-arabinofuranosidase {Arabidopsis thaliana},
            partial (89%)
          Length = 2351

 Score = 27.3 bits (59), Expect = 7.6
 Identities = 15/40 (37%), Positives = 18/40 (44%)
 Frame = -3

Query: 93   GTTTVILEAVASHDLWIWHAFFGCPGTLNDINVLDRSPVF 132
            GT T +        LWI   FFGC    + I  +D S VF
Sbjct: 2130 GTITFMSFPTL*SRLWIGITFFGCEKEFSSIKFVDVSTVF 2011


>BF520057 similar to SP|Q05753|AKR_ Ankyrin repeat protein (AKRP). [Mouse-ear
           cress] {Arabidopsis thaliana}, partial (37%)
          Length = 632

 Score = 27.3 bits (59), Expect = 7.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 104 SHDLWIWHAFFGCP 117
           S D W+WHAFF  P
Sbjct: 412 SRDNWLWHAFFQLP 371


>AL389755 similar to GP|21554158|gb amino acid permease-like protein
           {Arabidopsis thaliana}, partial (36%)
          Length = 509

 Score = 26.9 bits (58), Expect = 9.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 64  GMIGSIDCMHWEWKNCPKAWEGQFTRGDKGTTT 96
           G++  + C+H  + NC   WE   T     ++T
Sbjct: 256 GILKGLQCLHCHFHNCSNFWEWHIT*DTSNSST 354


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.324    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,512,850
Number of Sequences: 36976
Number of extensions: 147755
Number of successful extensions: 691
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of query: 308
length of database: 9,014,727
effective HSP length: 96
effective length of query: 212
effective length of database: 5,465,031
effective search space: 1158586572
effective search space used: 1158586572
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)


Medicago: description of AC146585.11