TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146571.2 - phase: 0 
         (527 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC86609 homologue to GP|15809886|gb|AAL06871.1 AT5g20890/F22D1_6...   617  e-177
TC86610 similar to GP|15809886|gb|AAL06871.1 AT5g20890/F22D1_60 ...   333  1e-91
TC86594 homologue to GP|9293959|dbj|BAB01862.1 chaperonin  t-com...   303  1e-82
TC76913 similar to SP|O04450|TCPE_ARATH T-complex protein 1  eps...   279  2e-75
TC92400 homologue to GP|15809886|gb|AAL06871.1 AT5g20890/F22D1_6...   252  3e-67
TC79654 homologue to GP|17979243|gb|AAL49938.1 AT3g11830/F26K24_...   246  2e-65
AW687192 homologue to GP|15809886|gb AT5g20890/F22D1_60 {Arabido...   176  3e-56
TC87609 homologue to GP|22135966|gb|AAM91565.1 TCP-1 chaperonin-...   139  6e-53
CA859232 similar to PIR|T37665|T37 probable t-complex protein 1 ...   144  1e-34
BQ751277 similar to PIR|T37665|T37 probable t-complex protein 1 ...   127  8e-30
TC78742 similar to GP|3819164|emb|CAA09989.1 cytosolic chaperoni...   117  1e-26
TC81888 homologue to GP|3819164|emb|CAA09989.1 cytosolic chapero...   116  2e-26
TC89014 similar to PIR|T01855|T01855 probable chaperonin-contain...   111  6e-25
BQ751278 similar to PIR|T37665|T37 probable t-complex protein 1 ...    87  1e-22
BG644350 similar to GP|14423532|gb putative chaperonin {Arabidop...    67  9e-22
TC79552 similar to GP|13877579|gb|AAK43867.1 putative T-complex ...    97  1e-20
TC89333 homologue to PIR|T01855|T01855 probable chaperonin-conta...    72  2e-20
TC76847 homologue to SP|P08927|RUBB_PEA RuBisCO subunit binding-...    90  2e-18
TC91063 similar to GP|13877579|gb|AAK43867.1 putative T-complex ...    87  2e-17
BE325936 homologue to GP|13877579|gb putative T-complex protein ...    74  2e-13

>TC86609 homologue to GP|15809886|gb|AAL06871.1 AT5g20890/F22D1_60
           {Arabidopsis thaliana}, partial (60%)
          Length = 1268

 Score =  617 bits (1590), Expect = e-177
 Identities = 316/318 (99%), Positives = 317/318 (99%)
 Frame = +2

Query: 210 DEGFILDKKIGLGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVAEIEGAEKEK 269
           DEGFILDKKIG+GQPKRIENAKILVANTAMDTDKVKIYGARVRVDSM KVAEIEGAEKEK
Sbjct: 2   DEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMTKVAEIEGAEKEK 181

Query: 270 MKEKVNKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIAST 329
           MKEKVNKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIAST
Sbjct: 182 MKEKVNKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIAST 361

Query: 330 FDNPESVKLGQCELIEEIMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDAL 389
           FDNPESVKLGQCELIEEIMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDAL
Sbjct: 362 FDNPESVKLGQCELIEEIMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDAL 541

Query: 390 CVLSQTVNDSRVLLGGGWPEMVMAKEIDALARKTPGKKSLAMEAFSRALLAIPTTIADNA 449
           CVLSQTVNDSRVLLGGGWPEMVMAKEIDALARKTPGKKSLAMEAFSRALLAIPTTIADNA
Sbjct: 542 CVLSQTVNDSRVLLGGGWPEMVMAKEIDALARKTPGKKSLAMEAFSRALLAIPTTIADNA 721

Query: 450 GLDSAELISQLRAEHQNEGCTAGIDVISGSVGDMVERGICEAFKVKQAVLLSATEAAEMI 509
           GLDSAELISQLRAEHQNEGCTAGIDVISGSVGDMVERGICEAFKVKQAVLLSATEAAEMI
Sbjct: 722 GLDSAELISQLRAEHQNEGCTAGIDVISGSVGDMVERGICEAFKVKQAVLLSATEAAEMI 901

Query: 510 LRVDDIITCAPRRREDRM 527
           LRVDDIITCAPRRREDRM
Sbjct: 902 LRVDDIITCAPRRREDRM 955


>TC86610 similar to GP|15809886|gb|AAL06871.1 AT5g20890/F22D1_60
           {Arabidopsis thaliana}, partial (42%)
          Length = 1425

 Score =  333 bits (853), Expect = 1e-91
 Identities = 184/254 (72%), Positives = 194/254 (75%)
 Frame = +3

Query: 227 IENAKILVANTAMDTDKVKIYGARVRVDSMAKVAEIEGAEKEKMKEKVNKIIGHGINCFV 286
           I NA ILVANTAM T KVKIYGARVRVDSM+KVAEIE AEKEKMKEK+NKII HGI  FV
Sbjct: 507 INNANILVANTAMGTGKVKIYGARVRVDSMSKVAEIEEAEKEKMKEKINKIIAHGIKSFV 686

Query: 287 NRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGQCELIEE 346
           NRQL+ NFPEELFAD GILAIE AD D IERLALV  GEIAS+FDNPESVKLG C LI+E
Sbjct: 687 NRQLM*NFPEELFADVGILAIEQADLDVIERLALVPDGEIASSFDNPESVKLGLCGLIKE 866

Query: 347 IMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGG 406
           I+IGED LIKFSGVAMGQACTIVLRGASHH+LDEAERSLHDA+CVLSQTVNDSR+LLGG 
Sbjct: 867 IIIGEDILIKFSGVAMGQACTIVLRGASHHILDEAERSLHDAVCVLSQTVNDSRLLLGGR 1046

Query: 407 WPEMVMAKEIDALARKTPGKKSLAMEAFSRALLAIPTTIADNAGLDSAELISQLRAEHQN 466
           WPEMV  KEIDAL RKTPGK  L            P             +          
Sbjct: 1047WPEMVTTKEIDALVRKTPGKSLLQWRRH------FPNNHY**CWFGQC*VDFSAP**APE 1208

Query: 467 EGCTAGIDVISGSV 480
            GCTAGIDVISGSV
Sbjct: 1209RGCTAGIDVISGSV 1250


>TC86594 homologue to GP|9293959|dbj|BAB01862.1 chaperonin  t-complex
           protein alpha subunit {Arabidopsis thaliana}, partial
           (98%)
          Length = 2113

 Score =  303 bits (775), Expect = 1e-82
 Identities = 191/542 (35%), Positives = 312/542 (57%), Gaps = 26/542 (4%)
 Frame = +2

Query: 1   MTIGNIFKDEASE-EKGERARMSSFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTV 58
           M++ N   D + E + G+  R  + V   A+A++VKT+LGP G+DK+L    G   +VT+
Sbjct: 68  MSLVNQTPDISGERQSGQDVRTQNVVACQAVANIVKTSLGPVGLDKMLVDDIG---DVTI 238

Query: 59  TNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHP 118
           TNDGATILK L +++PAAKVLV+++++QD EVGDGTTSVV++A ELL+ A  LV  KIHP
Sbjct: 239 TNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHP 418

Query: 119 MTIIAGFRMAAECARSALVEKVVDNKGDAEKFRSD-LMNIARTTLSSKILSQDKEHFAKL 177
            +II+G+R+A   A   + EK+       EK   D L+N A+T++SSK+++ D + FA L
Sbjct: 419 TSIISGYRLAMREACKYVDEKLAVK---VEKLGKDSLINCAKTSMSSKLIAGDSDFFANL 589

Query: 178 AVDAVMRLKGSTN--------LESVQIIKKPGGSLIDSFLDEGFILDK-KIGLGQPKRIE 228
            V+AV  +K  TN        ++ + I+K  G S  DSFL  G+ L+  +   G P ++ 
Sbjct: 590 VVEAVQAVK-MTNARGEVRYPIKGINILKAHGKSARDSFLMNGYALNTGRAAQGMPLKVS 766

Query: 229 NAKILVANTAMDTDKVKIYGARVRVDSMAKVAEIEGAEKEKMKEKVNKIIGHGINCFVNR 288
            AKI   +  +   K+++ G +V V    ++ +I   E +  KE++ K++  G N  +  
Sbjct: 767 PAKIACLDFNLQKTKMQL-GVQVLVSDPRELEKIRQREADMTKERIEKLLKAGANVVLTT 943

Query: 289 QLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVK------LGQCE 342
           + I +   + F +AG +A+     + +  +A  TG  + STF + E  +      LG  +
Sbjct: 944 KGIDDMALKYFVEAGAIAVRRVRKEDMRHVAKATGATLVSTFADMEGEETFEPSFLGTAD 1123

Query: 343 LIEEIMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVL 402
            + E  I +D +I   G     A +++LRGA+ ++LDE +R+LHDAL ++ +T+  + V+
Sbjct: 1124EVVEERIADDAVIMIKGTKTSSAVSLILRGANDYMLDEMDRALHDALSIVKRTLESNTVV 1303

Query: 403 LGGGWPEMVMAKEIDALARKTPGKKSLAMEAFSRALLAIPTTIADNAGLDSAELISQLRA 462
            GGG  E  ++  ++ LA     ++ LA+  F+ +LL IP  +A NA  D+ +L+++LRA
Sbjct: 1304AGGGAVEAALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLAVNAAKDATDLVAKLRA 1483

Query: 463 EH--------QNEGCTAGIDVISGSVGDMVERGICEAFKVKQAVLLSATEAAEMILRVDD 514
            H        +    + G+D+  G   + +E G+ E    K  ++  ATEAA  ILR+DD
Sbjct: 1484CHYAAQTKADKKHLSSTGLDLSEGKTRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDD 1663

Query: 515 II 516
           +I
Sbjct: 1664MI 1669


>TC76913 similar to SP|O04450|TCPE_ARATH T-complex protein 1  epsilon
           subunit (TCP-1-epsilon) (CCT-epsilon). [Mouse-ear
           cress], complete
          Length = 1965

 Score =  279 bits (713), Expect = 2e-75
 Identities = 175/522 (33%), Positives = 292/522 (55%), Gaps = 10/522 (1%)
 Frame = +1

Query: 6   IFKDEASEEK--GERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGA 63
           I +++ S+ +  G  A+ ++     A+A +++T+LGPKGMDK+LQS     +V ++NDGA
Sbjct: 148 ILREQESKNRLRGLDAQKANISAGKAVARILRTSLGPKGMDKMLQSPDG--DVIISNDGA 321

Query: 64  TILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIA 123
           TIL+ + +DN  AK++V++S+ QD E+GDGTT VVVLAG LL +AE+L+   IHP+ I  
Sbjct: 322 TILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVLAGSLLEQAERLLERGIHPIRIAE 501

Query: 124 GFRMAAECARSALVEKVVDNKGDAEKFRSDLMNIARTTLSSKILSQDKEHFAKLAVDAVM 183
           G+ MA+  A   L EK+ +     E     L+    TTLSSKI+++ K   A++AV AV+
Sbjct: 502 GYEMASRIAVENL-EKIANKFEFGETILEPLIQTCMTTLSSKIVNRCKRSLAEIAVKAVL 678

Query: 184 RL----KGSTNLESVQIIKKPGGSLIDSFLDEGFILDKKIGLGQ-PKRIENAKILVANTA 238
            +    +   NL+ +++  K GG L D+ L  G I+DK +   Q PK+IE+AKI +    
Sbjct: 679 AVADLERKDVNLDLIKVEGKVGGKLEDTELVYGIIVDKDMSHPQMPKQIEDAKIAILTCP 858

Query: 239 MDTDKVKIYGARVRVDSMAKVAEIEGAEKEKMKEKVNKIIGHGINCFVNRQLIYNFPEEL 298
            +  K K    +V +D++ K   +   E++   + V +    G    + +    +    L
Sbjct: 859 FEPPKPKT-KHKVDIDTVEKFQTLRKQEQKYFDDMVQQCKDVGATLVICQWGFDDEANHL 1035

Query: 299 FADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGQCELIEEIMIG--EDKLIK 356
                + A+       +E +A+ TGG I   F    + KLG+  ++ E   G  +D+++ 
Sbjct: 1036LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTAEKLGKAGIVREKAFGTTKDRMLY 1215

Query: 357 FSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEI 416
               A  +A TI +RG +  +++E +RS+HDALCV    + ++ ++ GGG  E+  +  +
Sbjct: 1216IEHCANSRAVTIFIRGGNKMIIEETKRSIHDALCVARNLIRNNSIVYGGGSAEIACSIAV 1395

Query: 417 DALARKTPGKKSLAMEAFSRALLAIPTTIADNAGLDSAELISQLRAEHQNE-GCTAGIDV 475
           +A A + PG +  A+ AF  AL +IP  +A+N+GL   E +S ++++   E     GID 
Sbjct: 1396EAAADRYPGVEQYAIRAFGDALESIPMALAENSGLQPIETLSSVKSQQITEKNPHFGIDC 1575

Query: 476 ISGSVGDMVERGICEAFKVKQAVLLSATEAAEMILRVDDIIT 517
                 DM E+ + E    KQ  +L AT+  +MIL++DD+I+
Sbjct: 1576NDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 1701


>TC92400 homologue to GP|15809886|gb|AAL06871.1 AT5g20890/F22D1_60
           {Arabidopsis thaliana}, partial (25%)
          Length = 581

 Score =  252 bits (643), Expect = 3e-67
 Identities = 137/155 (88%), Positives = 140/155 (89%), Gaps = 1/155 (0%)
 Frame = +2

Query: 1   MTIGNIFKDEASEEKGERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTN 60
           M I  IFKDEASEEKGERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTN
Sbjct: 71  MAIDRIFKDEASEEKGERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTN 250

Query: 61  DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMT 120
           DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMT
Sbjct: 251 DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMT 430

Query: 121 IIAGFRMAAECARSALV-EKVVDNKGDAEKFRSDL 154
           IIAGFRMAAECA   +   ++   K DAEKFR  L
Sbjct: 431 IIAGFRMAAECAP*CIG*GRLWTTKEDAEKFRLGL 535



 Score = 28.5 bits (62), Expect = 6.6
 Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +3

Query: 133 RSALVEKVVDNKGDAEKFRS----DLMNIARTTLSSK 165
           R+ALVE   +  G  +K       DLMNIARTTLSSK
Sbjct: 468 RNALVE---EGCGQQKKMLRNSG*DLMNIARTTLSSK 569


>TC79654 homologue to GP|17979243|gb|AAL49938.1 AT3g11830/F26K24_12
           {Arabidopsis thaliana}, partial (72%)
          Length = 1235

 Score =  246 bits (628), Expect = 2e-65
 Identities = 147/392 (37%), Positives = 223/392 (56%), Gaps = 5/392 (1%)
 Frame = +1

Query: 6   IFKDEASEEKGERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATI 65
           + K+     +G+   +S+     A+AD+V+TTLGP+GMDK++    +G  VT++NDGATI
Sbjct: 58  LLKEGTDTSQGKPQLVSNINACTAVADVVRTTLGPRGMDKLIHDD-KG-SVTISNDGATI 231

Query: 66  LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGF 125
           +K L I +PAAK+LVDI+K QD EVGDGTT+VV+LA E LREA+  +   +H   +I  +
Sbjct: 232 MKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHSQNLIRSY 411

Query: 126 RMAAECARSALVEKVVDNKGDA-EKFRSDLMNIARTTLSSKILSQDKEHFAKLAVDAVMR 184
           R A   A   + E  V  +G + E+ +S L   A TTLSSK++  +KE FA + VDAV+ 
Sbjct: 412 RTAGSLAIEKVKELAVSIEGKSLEEKKSLLGKCAATTLSSKLIGGEKEFFASMVVDAVIA 591

Query: 185 LKGSTNLESVQIIKKPGGSLIDSFLDEGFILDKKIGLG----QPKRIENAKILVANTAMD 240
           +     L  + I K PGG++ DSFL  G    K         QPK+  + KIL+ N  ++
Sbjct: 592 IGTDDRLNMIGIKKVPGGNMRDSFLVNGVAFKKTFSYAGFEQQPKKFLDPKILLLNVELE 771

Query: 241 TDKVKIYGARVRVDSMAKVAEIEGAEKEKMKEKVNKIIGHGINCFVNRQLIYNFPEELFA 300
               K   A +R+   ++   I  AE   + +K +K +  G    ++R  I +   + FA
Sbjct: 772 LKSEK-ENAEIRLSDPSQYQSIVDAEWNIIYDKWDKCVQSGAKVVLSRLAIGDLATQYFA 948

Query: 301 DAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGQCELIEEIMIGEDKLIKFSGV 360
           D  I        + ++R+A  TGG + ++ +N     LG CE+ EE  +G ++   F+G 
Sbjct: 949 DRDIFCAGRVAEEDLKRVAAATGGTVQTSVNNIIDEVLGTCEIFEEKQVGNERFNIFNGC 1128

Query: 361 AMGQACTIVLRGASHHVLDEAERSLHDALCVL 392
             GQ  TIVLRG +   ++EAERSLHDA+ ++
Sbjct: 1129PSGQTATIVLRGGADQFIEEAERSLHDAIMIV 1224


>AW687192 homologue to GP|15809886|gb AT5g20890/F22D1_60 {Arabidopsis
           thaliana}, partial (21%)
          Length = 351

 Score =  176 bits (445), Expect(2) = 3e-56
 Identities = 87/89 (97%), Positives = 88/89 (98%)
 Frame = +2

Query: 336 VKLGQCELIEEIMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQT 395
           + LGQCELIEEIMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQT
Sbjct: 83  LSLGQCELIEEIMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQT 262

Query: 396 VNDSRVLLGGGWPEMVMAKEIDALARKTP 424
           VNDSRVLLGGGWPEMVMAKEIDALARKTP
Sbjct: 263 VNDSRVLLGGGWPEMVMAKEIDALARKTP 349



 Score = 61.6 bits (148), Expect(2) = 3e-56
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = +1

Query: 309 HADFDGIERLALVTGGEIASTFDNPESVK 337
           HADFDGIERLALVTGGEIASTFDNPESVK
Sbjct: 1   HADFDGIERLALVTGGEIASTFDNPESVK 87


>TC87609 homologue to GP|22135966|gb|AAM91565.1 TCP-1 chaperonin-like
           protein {Arabidopsis thaliana}, partial (96%)
          Length = 1899

 Score =  139 bits (350), Expect(2) = 6e-53
 Identities = 107/374 (28%), Positives = 188/374 (49%), Gaps = 16/374 (4%)
 Frame = +3

Query: 167 LSQDKEHFAKLAVDAVMRLKG---STNLESVQIIKKPGGSLIDSFLDEGFILDKKIGLGQ 223
           +S   +    + VDAV+ ++    + +L  V+I+       +D+ L EG +LD   G   
Sbjct: 483 MSHLXDQLTNIIVDAVLCIRKPEEAIDLFMVEIMHMRHKFDVDTRLVEGLVLDH--GSRH 656

Query: 224 P---KRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVAEIEGAEKEKMKEKVNKII-- 278
           P   +R EN  IL  N +++ +K +I       ++  + A +  AE+ ++ EKV KII  
Sbjct: 657 PDMKRRAENCHILTCNVSLEYEKSEINSGFFYSNAEQREAMVI-AERRQVDEKVRKIIEL 833

Query: 279 ------GHGINCFVNRQLIYNFPE-ELFADAGILAIEHADFDGIERLALVTGGEIASTFD 331
                  +  N  +  Q   + P  ++ A  GI+A+  A    +ERL L  GGE  ++ D
Sbjct: 834 KRKVCPDNDSNFVIINQKGIDPPSLDMLAREGIIALLRAKRRNMERLVLACGGEAVNSVD 1013

Query: 332 NPESVKLGQCELIEEIMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCV 391
           +     LG   L+ E ++GE+K      V    +CTI+++G + H + + + ++ D L  
Sbjct: 1014DLTPECLGWAGLVYEHVLGEEKYTFVENVKNPFSCTILIKGPNDHTIAQIKDAVRDGLRA 1193

Query: 392 LSQTVNDSRVLLGGGWPEMVMAKEIDALARKT-PGKKSLAMEAFSRALLAIPTTIADNAG 450
           +  T+ D  V+LG G  E+   + +    +KT  G+  L +EAF+ ALL +P T+A+N+G
Sbjct: 1194VKNTIEDESVVLGAGAFEVAARQHLMNEVKKTVQGRAQLGVEAFADALLVVPKTLAENSG 1373

Query: 451 LDSAELISQLRAEHQNEGCTAGIDVISGSVGDMVERGICEAFKVKQAVLLSATEAAEMIL 510
           LD+ ++I  L+ EH + G   G+   +G   D    GI + + VK+ ++ S    A  +L
Sbjct: 1374LDTQDVIIALKGEH-DRGNIVGLSQNTGEPIDPQMEGIFDNYSVKRQIINSGPVIASQLL 1550

Query: 511 RVDDIITCAPRRRE 524
            VD++I      R+
Sbjct: 1551LVDEVIRAGRNMRK 1592



 Score = 87.0 bits (214), Expect(2) = 6e-53
 Identities = 48/139 (34%), Positives = 77/139 (54%)
 Frame = +1

Query: 27  AMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQ 86
           A  +  ++K+ LGPKG  K+L   G   ++ +T DG T+LK + I NP A ++   +  Q
Sbjct: 67  AKGLQXVLKSNLGPKGTIKML--VGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQ 240

Query: 87  DDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGFRMAAECARSALVEKVVDNKGD 146
           DD  GDGTTS V+  GEL++++E+ +   +HP  ++ GF +A       L +        
Sbjct: 241 DDISGDGTTSTVLFIGELMKQSERYIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMG 420

Query: 147 AEKFRSDLMNIARTTLSSK 165
           AE  +  L  +ARTT+ +K
Sbjct: 421 AEPDKEILKMVARTTVRTK 477


>CA859232 similar to PIR|T37665|T37 probable t-complex protein 1  epsilon
           subunit - fission yeast (Schizosaccharomyces pombe),
           partial (39%)
          Length = 692

 Score =  144 bits (362), Expect = 1e-34
 Identities = 86/201 (42%), Positives = 124/201 (60%), Gaps = 8/201 (3%)
 Frame = +1

Query: 12  SEEKGERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHI 71
           S   G  A  S  + A  +A+++KT+LGP+G+DKIL S+    ++TVTNDGATIL  + +
Sbjct: 106 SRLSGIEAIKSHILAAKTVANIIKTSLGPRGLDKILISSDG--DITVTNDGATILTQMEV 279

Query: 72  DNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGFRMAAEC 131
           ++  AK+LV +SK QDDE+GDGTT VVVLAG LL + E L+   IHP+ I  GF  A + 
Sbjct: 280 EHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQCETLLDRGIHPIRISDGFERACKI 459

Query: 132 ARSALVEKVVDNKGDAEKFRSD----LMNIARTTLSSKILSQDKEHFAKLAVDAVMRL-- 185
           A   L     D+  D  +F  D    L+  A+T+L SKI+S+  + F K+AVDAV+ +  
Sbjct: 460 AVEHL-----DSISDVVEFTKDNTENLLKTAKTSLGSKIVSKHHDQFTKIAVDAVLSVAD 624

Query: 186 --KGSTNLESVQIIKKPGGSL 204
             +   + E +++  K GGSL
Sbjct: 625 LERKDVDFELIKVDGKVGGSL 687


>BQ751277 similar to PIR|T37665|T37 probable t-complex protein 1  epsilon
           subunit - fission yeast (Schizosaccharomyces pombe),
           partial (39%)
          Length = 785

 Score =  127 bits (320), Expect = 8e-30
 Identities = 70/208 (33%), Positives = 120/208 (57%), Gaps = 6/208 (2%)
 Frame = -3

Query: 315 IERLALVTGGEIASTFDNPESVKLGQCELIEEIMIG--EDKLIKFSGVAMGQACTIVLRG 372
           IE  A+ T G I   F++ +  KLG    + E+  G   +K++     A  +A T+ +RG
Sbjct: 765 IELFAIATNGRIVPRFEDLKPEKLGTAGSVREMTFGTTREKMLVIEECANTRAVTVFVRG 586

Query: 373 ASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEIDALARKTPGKKSLAME 432
           ++  ++DEA+RSLHDALCV+   V D+RV+ GGG  E+  +  ++  A KTPG +  AM 
Sbjct: 585 SNKMIIDEAKRSLHDALCVVRNLVRDNRVVYGGGAAEIACSLAVEDAAVKTPGLEQYAMR 406

Query: 433 AFSRALLAIPTTIADNAGLDSAELISQLRAEHQNEGC----TAGIDVISGSVGDMVERGI 488
           AF+ AL A+P  +A+N+GL+    +++++++    G       G+D +S    DM E  +
Sbjct: 405 AFAEALDAVPMALAENSGLNPIATLAEVKSQQVKAGAKERGRLGVDCMSRGNNDMKEAFV 226

Query: 489 CEAFKVKQAVLLSATEAAEMILRVDDII 516
            +    K+  L+ AT+   M+L+V+++I
Sbjct: 225 IDPLISKRQQLMLATQLCRMVLKVNNVI 142


>TC78742 similar to GP|3819164|emb|CAA09989.1 cytosolic chaperonin
           delta-subunit {Glycine max}, partial (38%)
          Length = 755

 Score =  117 bits (293), Expect = 1e-26
 Identities = 73/198 (36%), Positives = 112/198 (55%), Gaps = 5/198 (2%)
 Frame = +3

Query: 14  EKGERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDN 73
           ++ +  R S+ + A ++A+ V+T+LGPKGMDK++ ++    EV +TNDGATIL  + +  
Sbjct: 177 KRKDDVRQSNIIAARSVANAVRTSLGPKGMDKMISTSSN--EVIITNDGATILNKMQVLQ 350

Query: 74  PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGFRMAAECAR 133
           PAAK+LV++SK QD   GDGTT+VVV+AG LL +   L++  IHP  I      A+  A 
Sbjct: 351 PAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEKCLLLLSHGIHPTVISDSLHKASVKAV 530

Query: 134 SALVEKVVDNKGDAEKFRSDLMNIARTTLSSKILSQDKEHFAKLAVDAVMRL-----KGS 188
             L    V  +      R  L+  A T+L+SK++SQ     A +A D+ + +        
Sbjct: 531 DVLTAMAVPVE---LTDRDSLVKSASTSLNSKVVSQYSSLLAPIAXDSXLSVIDPARPEM 701

Query: 189 TNLESVQIIKKPGGSLID 206
            +L  V  + K GG+  D
Sbjct: 702 VDLRDVXXVXKLGGTXDD 755


>TC81888 homologue to GP|3819164|emb|CAA09989.1 cytosolic chaperonin
           delta-subunit {Glycine max}, partial (29%)
          Length = 728

 Score =  116 bits (290), Expect = 2e-26
 Identities = 57/151 (37%), Positives = 95/151 (62%)
 Frame = +3

Query: 367 TIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEIDALARKTPGK 426
           T+++RG++  VLDEAERSLHDALCV+   V    ++ GGG PE+ +++++ A A+   G 
Sbjct: 12  TVLVRGSNLLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGM 191

Query: 427 KSLAMEAFSRALLAIPTTIADNAGLDSAELISQLRAEHQNEGCTAGIDVISGSVGDMVER 486
           +   + AF+ AL  +P T+A+NAGL+   ++++LR  H       GI+V  G + +++E 
Sbjct: 192 EGYCIRAFAEALEVVPYTLAENAGLNPIAIVTELRNRHAKGEINTGINVRKGQITNILEE 371

Query: 487 GICEAFKVKQAVLLSATEAAEMILRVDDIIT 517
            + +   V  + +  ATE   MIL++DDI+T
Sbjct: 372 NVVQPLLVSTSAITLATECVRMILKIDDIVT 464


>TC89014 similar to PIR|T01855|T01855 probable chaperonin-containing TCP-1
           complex gamma chain F9D12.18 - Arabidopsis thaliana,
           partial (20%)
          Length = 736

 Score =  111 bits (278), Expect = 6e-25
 Identities = 55/131 (41%), Positives = 82/131 (61%)
 Frame = +2

Query: 6   IFKDEASEEKGERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATI 65
           + KD    E G +   ++   + A+AD+++TTLGP+ M K+L     G  + VTNDG  I
Sbjct: 284 VLKDSLKRESGPKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGG--IVVTNDGNAI 457

Query: 66  LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGF 125
           L+ L I +PAAK ++++S+ QD+EVGDGTTSV++LAGE+L  AE  +    HP  I   +
Sbjct: 458 LRELDIAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLHVAEAFIDKNYHPTVICRAY 637

Query: 126 RMAAECARSAL 136
             A E A +A+
Sbjct: 638 NKALEDAIAAI 670


>BQ751278 similar to PIR|T37665|T37 probable t-complex protein 1  epsilon
           subunit - fission yeast (Schizosaccharomyces pombe),
           partial (26%)
          Length = 596

 Score = 87.4 bits (215), Expect(2) = 1e-22
 Identities = 44/92 (47%), Positives = 66/92 (70%), Gaps = 2/92 (2%)
 Frame = +2

Query: 6   IFKDEASEEK--GERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGA 63
           + +D+  +++  G  A  +  + A  +A++VKT+LGP+G+DKIL S     ++TVTNDGA
Sbjct: 149 VVRDQGKKKRQYGNEAVKNHILAARTVANIVKTSLGPRGLDKILISPDG--DITVTNDGA 322

Query: 64  TILKSLHIDNPAAKVLVDISKVQDDEVGDGTT 95
           TIL+ + I N  AK+LV++SK QDDE+GDGTT
Sbjct: 323 TILQQMEISNHVAKLLVELSKSQDDEIGDGTT 418



 Score = 37.4 bits (85), Expect(2) = 1e-22
 Identities = 23/57 (40%), Positives = 30/57 (52%)
 Frame = +3

Query: 97  VVVLAGELLREAEKLVAAKIHPMTIIAGFRMAAECARSALVEKVVDNKGDAEKFRSD 153
           VVVLAG LL +A +L+   IHP+ I  G+  A + A + L     DN  D   F  D
Sbjct: 423 VVVLAGALLEQAAELIDKGIHPIRIADGYDQACDIAVAEL-----DNISDTINFTKD 578


>BG644350 similar to GP|14423532|gb putative chaperonin {Arabidopsis
           thaliana}, partial (41%)
          Length = 672

 Score = 67.0 bits (162), Expect(2) = 9e-22
 Identities = 37/124 (29%), Positives = 64/124 (50%)
 Frame = +2

Query: 300 ADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGQCELIEEIMIGEDKLIKFSG 359
           A  GI+A+  A    +ERL L  GGE  ++ D+     LG   L+ E ++GE+K      
Sbjct: 44  AREGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPECLGWAGLVYEHVLGEEKYTFVEN 223

Query: 360 VAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEIDAL 419
           V    +CTI+++G + H + + + ++ D L  +  T+ D  V+LG G  E+   + +   
Sbjct: 224 VKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVILGAGAFEVAARQHLINE 403

Query: 420 ARKT 423
            +KT
Sbjct: 404 VKKT 415



 Score = 54.7 bits (130), Expect(2) = 9e-22
 Identities = 29/79 (36%), Positives = 48/79 (60%)
 Frame = +3

Query: 421 RKTPGKKSLAMEAFSRALLAIPTTIADNAGLDSAELISQLRAEHQNEGCTAGIDVISGSV 480
           R   G+  L +EAF+ ALL IP T+A+N+GLD+ ++I  L  EH ++G   G++  +G  
Sbjct: 411 RLCKGRAQLGVEAFANALLVIPKTLAENSGLDTQDVIIALTGEH-DKGNVVGLNQHTGEP 587

Query: 481 GDMVERGICEAFKVKQAVL 499
            D    GI + + VK+ ++
Sbjct: 588 VDPQMEGIFDNYSVKRQIV 644


>TC79552 similar to GP|13877579|gb|AAK43867.1 putative T-complex protein 1
           theta subunit; TCP-1-Theta {Arabidopsis thaliana},
           partial (39%)
          Length = 1063

 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 62/207 (29%), Positives = 97/207 (45%), Gaps = 1/207 (0%)
 Frame = +3

Query: 315 IERLALVTGGEIASTFDNPESVKLGQCELIEEIMIGEDKLIKFSGVAMGQA-CTIVLRGA 373
           + R    TG         P    LG  + +    IG  ++        G +  T+VLRG+
Sbjct: 24  LRRFCRTTGSVAMLKLSRPNPDDLGYVDSVSVEEIGGARVTIVKNEEGGNSVATVVLRGS 203

Query: 374 SHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEIDALARKTPGKKSLAMEA 433
           +  +LD+ ER++ D +        DSR++ G    E+ +AK +   + K  G    A+  
Sbjct: 204 TDSILDDIERAVDDGVNTYKTMCRDSRIVPGAAATEIELAKRVKEFSFKETGLDQYAIAK 383

Query: 434 FSRALLAIPTTIADNAGLDSAELISQLRAEHQNEGCTAGIDVISGSVGDMVERGICEAFK 493
           F+ +   IP T+A+NAGL++ E+IS L AEH +     GID+  G   D+    + +   
Sbjct: 384 FAESFEMIPRTLAENAGLNAMEIISSLYAEHASGNTKVGIDLDEGVCKDVTTTHVWDLHM 563

Query: 494 VKQAVLLSATEAAEMILRVDDIITCAP 520
            K   L  A +AA  +LRVD II   P
Sbjct: 564 AKLFALKYAADAACTVLRVDQIIMAKP 644


>TC89333 homologue to PIR|T01855|T01855 probable chaperonin-containing TCP-1
           complex gamma chain F9D12.18 - Arabidopsis thaliana,
           partial (52%)
          Length = 1182

 Score = 72.4 bits (176), Expect(2) = 2e-20
 Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
 Frame = +3

Query: 401 VLLGGGWPEMVMAKEIDALARKTPGKKSLAMEAFSRALLAIPTTIADNAGLDSAELISQL 460
           + LGGG  EM ++  +   +    G +    EA + A  +IP T+A N G++    ++ L
Sbjct: 459 LFLGGGATEMTVSAALKQKSSSIEGIEKWPYEAAAIAFESIPRTLAQNCGVNVIRTMTAL 638

Query: 461 RAEHQN-EGCTAGIDVISGSVGDMVERGICEAFKVKQAVLLSATEAAEMILRVDDIIT 517
           + +H N E    GID  +G + DM ER I +A+ VK     +A EAA M+LR+DDI++
Sbjct: 639 QGKHANGENAWIGIDGNTGVIADMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 812



 Score = 45.1 bits (105), Expect(2) = 2e-20
 Identities = 32/106 (30%), Positives = 50/106 (46%), Gaps = 1/106 (0%)
 Frame = +2

Query: 303 GILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGQ-CELIEEIMIGEDKLIKFSGVA 361
           G+ AI         R+A   G  I +  D  +   +G    L E   IG++         
Sbjct: 161 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEYFAFIVDCK 340

Query: 362 MGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGW 407
             +ACT++LRGAS  +L+E ER+L DA+ V    + + + L+ G W
Sbjct: 341 EPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPK-LVPGRW 475


>TC76847 homologue to SP|P08927|RUBB_PEA RuBisCO subunit binding-protein
           beta subunit  chloroplast precursor (60 kDa chaperonin
           beta subunit), partial (96%)
          Length = 2096

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 120/524 (22%), Positives = 221/524 (41%), Gaps = 33/524 (6%)
 Frame = +3

Query: 26  GAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPA----AKVLVD 81
           G   +ADLV  TLGPKG + +L+S  +     + NDG T+ + + +++P     AK++  
Sbjct: 330 GVNKLADLVGVTLGPKGRNVVLES--KYGSPKIVNDGVTVAREVELEDPVENIGAKLVRQ 503

Query: 82  ISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGFRMAAEC--ARSALVEK 139
            +   +D  GDGTT+ VVLA  L+ E  K+VAA  +P+ I  G    A+   A   L+ K
Sbjct: 504 AAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTAKALVAELKLMSK 683

Query: 140 VVDNKGDAEKFRSDLMNIARTTLSS--KILSQDKEHFAKLAVDAVMRLKGSTNLESVQII 197
            V++        S+L ++A  +  +  ++ +   E  +K+    V+ L+   + E+  + 
Sbjct: 684 EVED--------SELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGRSAEN-NLY 836

Query: 198 KKPGGSLIDSFLDEGFILDKKIGLGQPKRIENAKILVANTAMDT--DKVKIYGARVRVDS 255
              G      ++   F+ D +         EN K+L+ +  +    D + I    +R + 
Sbjct: 837 VVEGMQFDRGYISPYFVTDSE---KMTVEFENCKLLLVDKKISNARDLINILEDAIR-NG 1004

Query: 256 MAKVAEIEGAEKEKMKE-KVNKIIGH------GINCFVNRQLIYNFPEELFADAGILAIE 308
              +   E  E+E +    VNK+ G           F  R+  Y     +     ++  E
Sbjct: 1005FPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREE 1184

Query: 309 -HADFDGIERLALVTGGEIASTFD---------NPESVKLGQCELIEEIMIGE-----DK 353
                D      L T  ++  T D           E+V     ++  +I   E     +K
Sbjct: 1185VGLSLDKAGNEVLGTAAKVVLTKDTTTIVGDGSTQEAVTKRVSQIKNQIEAAEQDYEKEK 1364

Query: 354 LIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMA 413
           L +      G    I +   +   L E +  + DAL      V +  +++GGG   + +A
Sbjct: 1365LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLA 1541

Query: 414 KEIDAL-ARKTPGKKSLAMEAFSRALLAIPTTIADNAGLDSAELISQLRAEHQNEGCTAG 472
            ++DA+ A     ++ +  +   RAL      IA NAG++ + +  ++ +   N+    G
Sbjct: 1542SKVDAIKATLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLS---NDDTRYG 1712

Query: 473 IDVISGSVGDMVERGICEAFKVKQAVLLSATEAAEMILRVDDII 516
            +  +G   D++  GI +  KV +  L  A   A+  L  D ++
Sbjct: 1713YNAATGKYEDLMSAGIIDPTKVVRCCLEHAASVAKTFLMSDCVV 1844


>TC91063 similar to GP|13877579|gb|AAK43867.1 putative T-complex protein 1
           theta subunit; TCP-1-Theta {Arabidopsis thaliana},
           partial (35%)
          Length = 758

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 50/157 (31%), Positives = 88/157 (55%), Gaps = 1/157 (0%)
 Frame = +3

Query: 30  IADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDE 89
           ++ + +T+LGP GM+K++       ++ VTND ATI+  L + +PAAK+LV   K Q +E
Sbjct: 225 LSTITRTSLGPNGMNKMV--INHLDKLFVTNDAATIVNELEVQHPAAKILVLAGKAQQEE 398

Query: 90  VGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGFRMAAECARSALVEKVVDNKGDAE- 148
           +GDG    +  AGELL  AE+L+   +HP  II+G+  A       L E V +   + + 
Sbjct: 399 IGDGANLTISFAGELLHGAEELIRMGLHPSEIISGYTKAIAKTMEILDELVEEGSDNMDV 578

Query: 149 KFRSDLMNIARTTLSSKILSQDKEHFAKLAVDAVMRL 185
           + +  +++  +  ++SK   Q+ +    L  DA +++
Sbjct: 579 RDKEQVISRMKAAVASKQFGQE-DTICSLVADACIQV 686


>BE325936 homologue to GP|13877579|gb putative T-complex protein 1  theta
           subunit; TCP-1-Theta {Arabidopsis thaliana}, partial
           (23%)
          Length = 473

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 38/102 (37%), Positives = 61/102 (59%)
 Frame = +2

Query: 17  ERARMSSFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAA 76
           + A + +      ++ + +T+LGP GM+K++       ++ VTND ATI+  L + +PAA
Sbjct: 125 DEAVLKNIDACKQLSTITRTSLGPNGMNKMV--INHLDKLFVTNDAATIVNELEVQHPAA 298

Query: 77  KVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHP 118
           K+LV  SK Q +E+GDG    +  AGELL+ AE+L+     P
Sbjct: 299 KILVLASKAQQEEIGDGANLTISFAGELLQGAEELIRMGFAP 424


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.317    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,086,329
Number of Sequences: 36976
Number of extensions: 112810
Number of successful extensions: 526
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of query: 527
length of database: 9,014,727
effective HSP length: 101
effective length of query: 426
effective length of database: 5,280,151
effective search space: 2249344326
effective search space used: 2249344326
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)