BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146569.5 + phase: 0
(211 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82276 similar to GP|8778331|gb|AAF79340.1| F14J16.3 {Arabidops... 147 2e-36
CA860408 GP|10728858|g CG10600 gene product {Drosophila melanoga... 42 1e-04
TC77900 similar to GP|9759182|dbj|BAB09797.1 ATP-dependent Clp p... 29 1.5
TC90040 homologue to GP|9294658|dbj|BAB03007.1 gene_id:F14O13.8~... 29 1.5
BQ143756 similar to GP|1322451|emb| ORF YGL003c {Saccharomyces c... 28 2.0
TC87589 similar to GP|20268752|gb|AAM14079.1 unknown protein {Ar... 28 2.6
TC79928 similar to SP|Q39054|CNX1_ARATH Molybdopterin biosynthes... 28 2.6
CA990541 weakly similar to GP|9758600|dbj gene_id:MDF20.10~pir||... 28 3.4
TC90790 similar to GP|18086412|gb|AAL57663.1 At2g17250/T23A1.11 ... 28 3.4
TC93519 similar to GP|10176862|dbj|BAB10068. emb|CAB80929.1~gene... 28 3.4
BE323961 28 3.4
BG449943 similar to GP|14583010|gb putative translesion synthesi... 27 4.4
TC87133 similar to GP|10176730|dbj|BAB09960. gene_id:MXM12.20~un... 27 4.4
BQ151141 26 9.8
>TC82276 similar to GP|8778331|gb|AAF79340.1| F14J16.3 {Arabidopsis
thaliana}, partial (4%)
Length = 603
Score = 147 bits (372), Expect = 2e-36
Identities = 74/145 (51%), Positives = 99/145 (68%), Gaps = 1/145 (0%)
Frame = +1
Query: 7 KHYSSFHNILLVGEGDFSFALCLAKAFGSAVNMVATSLDDRGSLAMKYRGAIRNLIELEG 66
KHYSS H IL VGEGDFSF+LCLA+AFGSA N++ATSLD + + KY + N ELE
Sbjct: 172 KHYSSKHKILFVGEGDFSFSLCLARAFGSAHNLIATSLDSQEKIEKKYSNGMSNARELEE 351
Query: 67 LGCTIMHEVDVHNMNQHHQLKHHNFFDRIIFNFPHSGFFQNESDAWVIGEHKKLVSGFLG 126
GC ++++VDV M+QH LK FD +++NFPH GF E+ I +KKL+ GF+
Sbjct: 352 RGCIVLYDVDVKVMSQHFFLKTQR-FDLVVYNFPHVGFLYPENSYCQIQLNKKLLKGFMA 528
Query: 127 SAKYML-NVGGEIHITHKTAHPFSN 150
+AK ++ GGEIH+THK P++N
Sbjct: 529 NAKALVKKEGGEIHVTHKEGDPYTN 603
>CA860408 GP|10728858|g CG10600 gene product {Drosophila melanogaster},
partial (0%)
Length = 451
Score = 42.4 bits (98), Expect = 1e-04
Identities = 26/74 (35%), Positives = 43/74 (57%), Gaps = 1/74 (1%)
Frame = +2
Query: 14 NILLVGEGDFSFALCLAK-AFGSAVNMVATSLDDRGSLAMKYRGAIRNLIELEGLGCTIM 72
++LLVGEG+FSFA LA+ + +++AT+LD L KY A ++ L G +M
Sbjct: 230 SVLLVGEGNFSFAHTLAENILKTGDSIIATTLDSERILKRKYDDAHEHISALIQKGGKVM 409
Query: 73 HEVDVHNMNQHHQL 86
+ VD +++ +L
Sbjct: 410 YNVDATQLDKCKEL 451
>TC77900 similar to GP|9759182|dbj|BAB09797.1 ATP-dependent Clp protease
regulatory subunit CLPX {Arabidopsis thaliana}, partial
(61%)
Length = 2144
Score = 28.9 bits (63), Expect = 1.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 78 HNMNQHHQLKHHNFFDRIIFNFPHSGFFQNESDAWVIGEHKKL 120
H++++HH KHHN D F H Q + G +K+L
Sbjct: 597 HHLHRHHHQKHHNSQDE--QQFHHQTKLQEDQQTKKQGPYKRL 475
>TC90040 homologue to GP|9294658|dbj|BAB03007.1 gene_id:F14O13.8~unknown
protein {Arabidopsis thaliana}, partial (2%)
Length = 1571
Score = 28.9 bits (63), Expect = 1.5
Identities = 23/89 (25%), Positives = 36/89 (39%), Gaps = 7/89 (7%)
Frame = +3
Query: 116 EHKKLVSGFLGSAKYM------LNVGGEIHITHKTAHPFSNW-NIKNLAENEKLLFIEEV 168
E K SG G +M + G H+ + T P N ++ N+ N L+ E
Sbjct: 870 EKTKFGSGSAGDKPHMSDGENGTSEGNSKHLENATQEPILNVKDLTNMNANGILISENEN 1049
Query: 169 TFYQHFYPGYGNKKGAGFKCDKSFPIGKC 197
T + + G +G+KC + GKC
Sbjct: 1050TKFNGWTENAGADDNSGWKCVEEVRSGKC 1136
>BQ143756 similar to GP|1322451|emb| ORF YGL003c {Saccharomyces cerevisiae},
partial (5%)
Length = 785
Score = 28.5 bits (62), Expect = 2.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 83 HHQLKHHNFFDRIIFNFPHSGFFQNESDA 111
HHQ++ R++F+FP S Q+E+DA
Sbjct: 262 HHQIQSLPQSSRLVFSFP*SFLMQDEADA 176
>TC87589 similar to GP|20268752|gb|AAM14079.1 unknown protein {Arabidopsis
thaliana}, partial (81%)
Length = 1615
Score = 28.1 bits (61), Expect = 2.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -1
Query: 70 TIMHEVDVHNMNQHHQLKHHNFFDRIIFNFPHSGFFQNESDAWVIGE 116
T++ D + + HH +HH+ R++ F H + ++ W GE
Sbjct: 424 TLLLCFDPYPLILHHHRRHHHLLHRLLLRFRHHC*WMHKWRLWEDGE 284
>TC79928 similar to SP|Q39054|CNX1_ARATH Molybdopterin biosynthesis CNX1
protein (Molybdenum cofactor biosynthesis enzyme CNX1).,
partial (60%)
Length = 1714
Score = 28.1 bits (61), Expect = 2.6
Identities = 18/61 (29%), Positives = 32/61 (51%)
Frame = +1
Query: 6 VKHYSSFHNILLVGEGDFSFALCLAKAFGSAVNMVATSLDDRGSLAMKYRGAIRNLIELE 65
V+H+ ++ + + + S L KAF S +N++ TS G ++M + IR L+E
Sbjct: 868 VQHHCKVVDLGIAKDDEESQGRILDKAFASGINILITS----GGVSMGDKDFIRPLLEKR 1035
Query: 66 G 66
G
Sbjct: 1036G 1038
>CA990541 weakly similar to GP|9758600|dbj
gene_id:MDF20.10~pir||T08929~similar to unknown protein
{Arabidopsis thaliana}, partial (13%)
Length = 712
Score = 27.7 bits (60), Expect = 3.4
Identities = 10/26 (38%), Positives = 18/26 (68%)
Frame = -1
Query: 149 SNWNIKNLAENEKLLFIEEVTFYQHF 174
+NW +K + E ++LLF+ V F+ +F
Sbjct: 175 ANWYVKQIREFQQLLFVTFVKFFFYF 98
>TC90790 similar to GP|18086412|gb|AAL57663.1 At2g17250/T23A1.11
{Arabidopsis thaliana}, partial (23%)
Length = 812
Score = 27.7 bits (60), Expect = 3.4
Identities = 14/38 (36%), Positives = 20/38 (51%)
Frame = -3
Query: 72 MHEVDVHNMNQHHQLKHHNFFDRIIFNFPHSGFFQNES 109
M + N+N+ HQ HNF +R I GF +NE+
Sbjct: 450 MKRSTISNLNKLHQRIKHNFLNRFI------GFIRNEN 355
>TC93519 similar to GP|10176862|dbj|BAB10068.
emb|CAB80929.1~gene_id:MRO11.1~similar to unknown
protein {Arabidopsis thaliana}, partial (12%)
Length = 1151
Score = 27.7 bits (60), Expect = 3.4
Identities = 12/29 (41%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Frame = -2
Query: 70 TIMHEVDV-HNMNQHHQLKHHNFFDRIIF 97
T +H+V V H+M+ H +HH DR+ F
Sbjct: 502 TNLHQVQVEHHMDSHKDEEHHKVHDRLNF 416
>BE323961
Length = 534
Score = 27.7 bits (60), Expect = 3.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 171 YQHFYPGYGNKKGAGFKCDKSFPIGKCSTFKFGSL 205
Y+H P G +G ++CD++ G C F+ L
Sbjct: 36 YRHHQPAGGGAEGPSWRCDQNLEAG-CHAFRVAQL 137
>BG449943 similar to GP|14583010|gb putative translesion synthesis polymerase
zeta subunit {Arabidopsis thaliana}, partial (75%)
Length = 658
Score = 27.3 bits (59), Expect = 4.4
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = -2
Query: 136 GEIHITHKTAHPFSNWNIKNLAENEKLLF 164
GE+H K + F WNI ++ EN LLF
Sbjct: 294 GEVHC--KLENKFLEWNIISIEENNXLLF 214
>TC87133 similar to GP|10176730|dbj|BAB09960. gene_id:MXM12.20~unknown
protein {Arabidopsis thaliana}, partial (85%)
Length = 635
Score = 27.3 bits (59), Expect = 4.4
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = -2
Query: 82 QHHQLKHHNFFDRIIFNFPH-----SGFFQNESDAWVIGEH 117
+HH HHN F +IIFN PH S ++++ +I EH
Sbjct: 289 KHHS--HHNLF-KIIFNIPHINNGLSTKYESQPRTQLIPEH 176
>BQ151141
Length = 1216
Score = 26.2 bits (56), Expect = 9.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 170 FYQHFYPGYGNKKGAGFK 187
F HF+PG G GAGFK
Sbjct: 485 FKNHFFPGKGFFWGAGFK 432
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.324 0.141 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,986,662
Number of Sequences: 36976
Number of extensions: 124726
Number of successful extensions: 1041
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of query: 211
length of database: 9,014,727
effective HSP length: 92
effective length of query: 119
effective length of database: 5,612,935
effective search space: 667939265
effective search space used: 667939265
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146569.5