TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146568.9 + phase: 0 /pseudo
         (19 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85636 homologue to GP|4959710|gb|AAD34458.1| Skp1 {Medicago sa...    36  0.003
TC85635 homologue to GP|4959710|gb|AAD34458.1| Skp1 {Medicago sa...    36  0.003
AL376690 similar to PIR|T02710|T027 putative kinetechore (Skp1p-...    31  0.13

>TC85636 homologue to GP|4959710|gb|AAD34458.1| Skp1 {Medicago sativa},
           complete
          Length = 898

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +1

Query: 3   SSTRKITLKSSDGETFE 19
           SSTRKITLKSSDGETFE
Sbjct: 139 SSTRKITLKSSDGETFE 189


>TC85635 homologue to GP|4959710|gb|AAD34458.1| Skp1 {Medicago sativa},
           complete
          Length = 914

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   SSTRKITLKSSDGETFE 19
           SSTRKITLKSSDGETFE
Sbjct: 135 SSTRKITLKSSDGETFE 185


>AL376690 similar to PIR|T02710|T027 putative kinetechore (Skp1p-like)
           protein [imported] - Arabidopsis thaliana, partial (22%)
          Length = 402

 Score = 30.8 bits (68), Expect = 0.13
 Identities = 14/19 (73%), Positives = 16/19 (83%)
 Frame = +3

Query: 1   MSSSTRKITLKSSDGETFE 19
           + SST+KITL SSDGE FE
Sbjct: 111 VESSTKKITLTSSDGEIFE 167


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.298    0.112    0.266 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,512
Number of Sequences: 36976
Number of extensions: 925
Number of successful extensions: 4
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 19
length of database: 9,014,727
effective HSP length: 0
effective length of query: 24
effective length of database: 9,014,727
effective search space: 216353448
effective search space used: 216353448
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 52 (24.6 bits)