BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146567.1 - phase: 0
(178 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC84097 similar to GP|22093623|dbj|BAC06919. hypothetical protei... 206 3e-54
CB893247 weakly similar to GP|20466612|g unknown protein {Arabid... 29 0.86
TC77435 similar to GP|7211427|gb|AAF40306.1| RNA helicase {Vigna... 28 1.9
TC77844 similar to PIR|T49049|T49049 hypothetical protein T5P19.... 27 5.6
BG645818 PIR|S58801|S58 ubiquinol--cytochrome-c reductase (EC 1.... 26 7.3
TC77323 similar to SP|O48670|RERA_ARATH RER1A protein (AtRER1A).... 26 7.3
BG454151 26 9.6
TC86209 weakly similar to SP|Q9SSK5|ML43_ARATH MLP-like protein ... 26 9.6
BG451415 weakly similar to SP|Q9SSK5|ML43_ MLP-like protein 43. ... 26 9.6
BG449417 similar to GP|15810385|gb| unknown protein {Arabidopsis... 26 9.6
>TC84097 similar to GP|22093623|dbj|BAC06919. hypothetical protein~predicted
by FGENESH etc. {Oryza sativa (japonica
cultivar-group)}, partial (33%)
Length = 686
Score = 206 bits (525), Expect = 3e-54
Identities = 105/110 (95%), Positives = 109/110 (98%)
Frame = +3
Query: 1 MISMKIGCALLGSLGASYNGVSLINLAISLFALVAIESSSQSLGRTYAFLLFCSILLDIS 60
+I ++IGCALLGSLGASYNGVSLINLAISLFALVAIESSSQSLGRTYAFLLFCSILLDIS
Sbjct: 357 LIYIQIGCALLGSLGASYNGVSLINLAISLFALVAIESSSQSLGRTYAFLLFCSILLDIS 536
Query: 61 WFILFTHEIWNISSDDYAKFFIFSVKLTLAMQIIGFIVRLSSSLLWIQIY 110
WFILFTHEIWNISSDDYAKFFIFSVKLTLAMQIIGFIVRLSSSL+WIQIY
Sbjct: 537 WFILFTHEIWNISSDDYAKFFIFSVKLTLAMQIIGFIVRLSSSLVWIQIY 686
>CB893247 weakly similar to GP|20466612|g unknown protein {Arabidopsis
thaliana}, partial (24%)
Length = 853
Score = 29.3 bits (64), Expect = 0.86
Identities = 25/75 (33%), Positives = 34/75 (45%)
Frame = -2
Query: 98 VRLSSSLLWIQIYRLGASYVDTASRAADFDLRSSFLSPVTPAVARQISNSNEILGGSIYD 157
V S S + + R+ Y +RA+ + S FL P +V Q N +IY
Sbjct: 792 VHTSISATYKHLVRINRRY----ARASKYWTTSYFL-PNYRSVGIQCKNM------AIYQ 646
Query: 158 PAYYSSLFEDSQENK 172
YYSS+F DSQ K
Sbjct: 645 ATYYSSIFGDSQRTK 601
>TC77435 similar to GP|7211427|gb|AAF40306.1| RNA helicase {Vigna radiata},
partial (67%)
Length = 1828
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 73 SSDDYAKFFIFSVKLTLAMQIIGFIVRLSSSLLWIQIYRLGASYVDTASRAADFDLRSSF 132
S+ D+ FF F L + ++I V SSS L+ + L + +TAS + SF
Sbjct: 365 STFDFFFFFSFFTFLEPSSELISLFVSSSSSELFFLFFELSFFFAETASTSETTSFWRSF 186
>TC77844 similar to PIR|T49049|T49049 hypothetical protein T5P19.130 -
Arabidopsis thaliana, partial (70%)
Length = 1969
Score = 26.6 bits (57), Expect = 5.6
Identities = 16/35 (45%), Positives = 21/35 (59%), Gaps = 4/35 (11%)
Frame = +1
Query: 35 AIESSSQSLGRTYAFLLFCSILLDI----SWFILF 65
AI+SSS S ++ LL C+IL+ I S F LF
Sbjct: 76 AIDSSSSSYSSSFFLLLLCTILVVILQLQSCFFLF 180
>BG645818 PIR|S58801|S58 ubiquinol--cytochrome-c reductase (EC 1.10.2.2)
cytochrome b - Leptothorax acervorum mitochondrion,
partial (10%)
Length = 701
Score = 26.2 bits (56), Expect = 7.3
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Frame = -2
Query: 67 HEIWNISSDDYAKFFIFSVKLTLAMQII------------GFIVRLSSSLLWIQIYRLGA 114
+ I++ +SD Y F +++T M +I G++V SSSL + I+ +G
Sbjct: 631 NHIFHETSDGYIILISFLMQVTCVM*VIQASKT*MRIRGIGYVV*FSSSLFRLCIFSIGG 452
Query: 115 SYVDTASR 122
V+ +R
Sbjct: 451 FKVENLNR 428
>TC77323 similar to SP|O48670|RERA_ARATH RER1A protein (AtRER1A). [Mouse-ear
cress] {Arabidopsis thaliana}, partial (85%)
Length = 1086
Score = 26.2 bits (56), Expect = 7.3
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 59 ISWFILFTHEIWNISSDDYAK--FFIFSVKLTLAMQIIGFIVRLSSSLLWIQIYR 111
+ +++LF + ++ Y K F+ F + + M ++ FIV + L+ IYR
Sbjct: 780 LDFYLLFVVRVLRMAICSYRKYSFYGFMIPEDMLMLVVNFIVDIRQYLIQF*IYR 944
>BG454151
Length = 598
Score = 25.8 bits (55), Expect = 9.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 51 LFCSILLDI--SWFILFTHEIWNISSDDYAKFFIFSVKLTLA 90
+FCSI+ +I F +WN+ Y +FF+F + L L+
Sbjct: 569 VFCSIIPTFFSDRYITF---LWNVYDKIYFRFFLFGIFLLLS 453
>TC86209 weakly similar to SP|Q9SSK5|ML43_ARATH MLP-like protein 43.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (41%)
Length = 807
Score = 25.8 bits (55), Expect = 9.6
Identities = 14/43 (32%), Positives = 23/43 (52%)
Frame = -2
Query: 3 SMKIGCALLGSLGASYNGVSLINLAISLFALVAIESSSQSLGR 45
+ +I C LL + GV+LI +IS+F++ + LGR
Sbjct: 167 TFEIWCVLLHKTS*NCWGVALIGTSISIFSIADVAIFVSPLGR 39
>BG451415 weakly similar to SP|Q9SSK5|ML43_ MLP-like protein 43. [Mouse-ear
cress] {Arabidopsis thaliana}, partial (20%)
Length = 546
Score = 25.8 bits (55), Expect = 9.6
Identities = 14/43 (32%), Positives = 23/43 (52%)
Frame = -2
Query: 3 SMKIGCALLGSLGASYNGVSLINLAISLFALVAIESSSQSLGR 45
+ +I C LL + GV+LI +IS+F++ + LGR
Sbjct: 137 TFEIWCVLLHKTS*NCWGVALIGTSISIFSIADVAIFVSPLGR 9
>BG449417 similar to GP|15810385|gb| unknown protein {Arabidopsis thaliana},
partial (13%)
Length = 630
Score = 25.8 bits (55), Expect = 9.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 51 LFCSILLDI--SWFILFTHEIWNISSDDYAKFFIFSVKLTLA 90
+FCSI+ +I F +WN+ Y +FF+F + L L+
Sbjct: 409 VFCSIIPTFFSDRYITF---LWNVYDKIYFRFFLFGIFLLLS 293
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.324 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,862,846
Number of Sequences: 36976
Number of extensions: 83137
Number of successful extensions: 629
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of query: 178
length of database: 9,014,727
effective HSP length: 90
effective length of query: 88
effective length of database: 5,686,887
effective search space: 500446056
effective search space used: 500446056
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146567.1