
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146561.5 + phase: 2 /pseudo/partial
(263 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC88626 similar to PIR|T04740|T04740 hypothetical protein F6G17.... 348 9e-97
AW695502 weakly similar to GP|16944811|em resistance gene-like {... 30 0.95
TC88609 similar to GP|15148914|gb|AAK84884.1 NAC domain protein ... 28 4.7
TC84032 similar to GP|10944739|emb|CAC14089. hypothetical protei... 27 6.1
>TC88626 similar to PIR|T04740|T04740 hypothetical protein F6G17.110 -
Arabidopsis thaliana, partial (33%)
Length = 1968
Score = 348 bits (894), Expect = 9e-97
Identities = 168/178 (94%), Positives = 168/178 (94%)
Frame = +2
Query: 29 RTLDIAKTVMKERSYVHGKTDQIIHLSNDGKLEEIMHAKSCSDLYKVVGEDFWSSTWCNS 88
RTLDIAKTVMKERSYVHGKTDQIIHLSNDGKLEEIMHAKSCSDLYKVVGEDFWSSTWCNS
Sbjct: 809 RTLDIAKTVMKERSYVHGKTDQIIHLSNDGKLEEIMHAKSCSDLYKVVGEDFWSSTWCNS 988
Query: 89 TAFEGKQLEGTRVTLVKMGQHGFDFAIRTPCTPARWEDYDAEMAMAWEALCNAYCGENYG 148
TAFEGKQLEGTRVTLVKMGQHGFDFAIRTPCTPARWEDYDAEMAMAWEALCNAYCGENYG
Sbjct: 989 TAFEGKQLEGTRVTLVKMGQHGFDFAIRTPCTPARWEDYDAEMAMAWEALCNAYCGENYG 1168
Query: 149 STDFDVLENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAANMEFTGSIPQGF 206
STDFDVLENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLA P GF
Sbjct: 1169STDFDVLENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAC*YGVHRKHPTGF 1342
Score = 147 bits (372), Expect = 3e-36
Identities = 71/72 (98%), Positives = 71/72 (98%)
Frame = +3
Query: 192 LAANMEFTGSIPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFAT 251
L ANMEFTGSIPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFAT
Sbjct: 1299 LLANMEFTGSIPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFAT 1478
Query: 252 TGSVVAALSSYD 263
TGSVVAALSSYD
Sbjct: 1479 TGSVVAALSSYD 1514
Score = 68.6 bits (166), Expect = 2e-12
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1
Query: 1 EEFNSGFGSHTPMILGQAKVVRYFPNYERTLDIAKTVMKE 40
EEFNSGFGSHTPMILGQAKVVRYFPNYER DI +++ +
Sbjct: 655 EEFNSGFGSHTPMILGQAKVVRYFPNYER*RDIFNSILTD 774
>AW695502 weakly similar to GP|16944811|em resistance gene-like {Solanum
tuberosum subsp. andigena}, partial (7%)
Length = 480
Score = 30.0 bits (66), Expect = 0.95
Identities = 19/47 (40%), Positives = 26/47 (54%), Gaps = 1/47 (2%)
Frame = +3
Query: 41 RSYVHGKTDQIIHLSNDGKLEEIMHAKSCSDLYKVV-GEDFWSSTWC 86
R+Y+H D+ I D E++ A S LY VV E++ SSTWC
Sbjct: 120 RNYIHTYIDKKIE-KGDEVWAELVKAIKQSTLYLVVFSENYASSTWC 257
>TC88609 similar to GP|15148914|gb|AAK84884.1 NAC domain protein NAC2
{Phaseolus vulgaris}, partial (71%)
Length = 1076
Score = 27.7 bits (60), Expect = 4.7
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Frame = +1
Query: 33 IAKTVMKERSY-VHGKTDQIIHLSNDGKLEEIMHAKSCSDLY 73
+ KT+ ++ Y H D II ++DG+LE + +SCS Y
Sbjct: 496 MGKTLQQKEDYSTHQFNDSIITNNDDGELEMMNLTRSCSLTY 621
>TC84032 similar to GP|10944739|emb|CAC14089. hypothetical protein
{Arabidopsis thaliana}, partial (7%)
Length = 675
Score = 27.3 bits (59), Expect = 6.1
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 41 RSYVHGKTDQIIHLSNDGKLEEIMHAKSCSDLYKVV-GEDFWSSTWCNSTAFEGKQL 96
R ++H D +I D E++ A S L+ VV +++ SSTWC + E +L
Sbjct: 179 RKHIHTYIDNLIE-KGDQVWAELVKAMKQSTLFLVVFSKNYASSTWCLNELVEIMEL 346
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,870,305
Number of Sequences: 36976
Number of extensions: 122397
Number of successful extensions: 582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of query: 263
length of database: 9,014,727
effective HSP length: 94
effective length of query: 169
effective length of database: 5,538,983
effective search space: 936088127
effective search space used: 936088127
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146561.5