TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146557.1 + phase: 0 /pseudo
         (409 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644690 weakly similar to GP|18542179|gb putative pol protein {...    38  0.006
TC92109 similar to GP|19683031|gb|AAL92653.1 HYPOTHETICAL 31.4 K...    28  8.4

>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
           partial (22%)
          Length = 629

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 22/52 (42%), Positives = 30/52 (57%)
 Frame = -1

Query: 12  NGCQKCLS*WCH*RRSRCQTTSRV*GS*AS*PCL*T*EITIWLETSSQSLV* 63
           NGC++C+ *W   R   CQ TS +*    +  C+     TIW E SS+S+V*
Sbjct: 275 NGCEECIY*WRSQRGGVCQATSWI*RCRGTKSCVQIE*DTIWSEASSKSMV* 120


>TC92109 similar to GP|19683031|gb|AAL92653.1 HYPOTHETICAL 31.4 KDA PROTEIN
           {Dictyostelium discoideum}, partial (2%)
          Length = 653

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 172 SNASNLHLKQRRYWNSSRPE 191
           S+  NLHLK R YW + R E
Sbjct: 169 SSCCNLHLKTRSYWYNKRSE 228


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.382    0.171    0.721 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,548,513
Number of Sequences: 36976
Number of extensions: 191701
Number of successful extensions: 2756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1626
Number of HSP's gapped (non-prelim): 1251
length of query: 409
length of database: 9,014,727
effective HSP length: 98
effective length of query: 311
effective length of database: 5,391,079
effective search space: 1676625569
effective search space used: 1676625569
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.8 bits)
S2: 59 (27.3 bits)