BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146555.16 + phase: 0
(449 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC84732 homologue to GP|14334996|gb|AAK59762.1 At1g05230/YUP8H12... 157 6e-39
TC81531 homologue to GP|3925363|gb|AAC79430.1| homeodomain prote... 110 1e-24
BI312112 similar to GP|22475195|gb homeodomain protein GhHOX1 {G... 96 2e-20
BQ139155 similar to GP|3925363|gb| homeodomain protein {Malus x ... 95 5e-20
AW694953 similar to GP|14334996|gb At1g05230/YUP8H12_16 {Arabido... 79 5e-15
TC90604 weakly similar to PIR|B96760|B96760 probable homeobox pr... 65 2e-13
BI272824 similar to GP|1814424|gb|A homeodomain protein AHDP {Ar... 55 6e-08
TC91840 similar to PIR|T10695|T10695 transcription factor HD-zip... 41 8e-04
CB894606 similar to GP|18076736|em HD-Zip protein {Zinnia elegan... 34 0.10
AW686191 similar to PIR|T01364|T01 homeodomain transcription fac... 30 1.5
TC76821 homologue to GP|17026394|gb|AAL33919.1 UDP-glucose pyrop... 28 5.5
TC93761 28 7.2
TC89064 similar to GP|17381038|gb|AAL36331.1 putative cyclophyli... 28 7.2
TC87740 similar to PIR|D84431|D84431 probable endosomal protein ... 28 7.2
TC77083 similar to PIR|H96668|H96668 protein F1N19.9 [imported] ... 28 7.2
TC78959 similar to GP|22136402|gb|AAM91279.1 putative WD-40 repe... 28 9.4
TC80678 28 9.4
>TC84732 homologue to GP|14334996|gb|AAK59762.1 At1g05230/YUP8H12_16
{Arabidopsis thaliana}, partial (35%)
Length = 808
Score = 157 bits (398), Expect = 6e-39
Identities = 103/273 (37%), Positives = 140/273 (50%), Gaps = 5/273 (1%)
Frame = +3
Query: 159 GATRWLTSIVRYIEWSETLKAPKL-IADAGVLIPQIGRTSFLKLADRMMRRFCANLGSTT 217
GA RW+ ++ R E + A + D GV+ Q GR S LKLA+RM FCA + ++T
Sbjct: 3 GAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSAST 182
Query: 218 KNPWIRLAPLPAGSADIRVMIANDMAGSTNEPIGTSLFFCTTLWLNVSPNRLFNFLRHEK 277
+ W L+ G+ D+RVM + P G L T+ WL V P R+F FLR E
Sbjct: 183 AHTWTTLSG--TGADDVRVMTRKSV-DDPGRPAGIVLSAATSFWLPVPPKRVFEFLRDEN 353
Query: 278 SRSKWDKHSQNLSIREFACILTGKHPENRVSLLRARDKN----EIFYLQESYKDTTASYV 333
SRS+WD S ++E A I G+ N VSLLR N + LQES DTT S+V
Sbjct: 354 SRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFV 533
Query: 334 IYCPLDEQKLTHLATGSNPDDVVAFPSGFAIIPGGLPRDGDKGKGNANSTANDESLLTIS 393
IY P+D + + G +PD V PSGFAI+P G +G GK SLLT++
Sbjct: 534 IYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTTNG--GKVLVKLDMGGGSLLTVA 707
Query: 394 FHIIGKANNAASIPPESVQTIYNMVTETMAAIK 426
I+ + A + SV T+ N++ T IK
Sbjct: 708 LQILVDSVPTAKLSLGSVATVNNLIACTGERIK 806
>TC81531 homologue to GP|3925363|gb|AAC79430.1| homeodomain protein {Malus x
domestica}, partial (25%)
Length = 888
Score = 110 bits (274), Expect = 1e-24
Identities = 70/186 (37%), Positives = 104/186 (55%), Gaps = 11/186 (5%)
Frame = +3
Query: 259 TLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREFACILTGKHPENRVSLLRA----RD 314
++WL VSP RLF+FLR E+ RS+WD S ++E A I G+ N VSLLRA +
Sbjct: 3 SVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSN 182
Query: 315 KNEIFYLQESYKDTTASYVIYCPLDEQKLTHLATGSNPDDVVAFPSGFAIIPGGLPRDGD 374
++ + LQE+ D S V+Y P+D + + G + V PSGFAI+P G G
Sbjct: 183 QSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDG---PGS 353
Query: 375 KGKGNANSTAN-------DESLLTISFHIIGKANNAASIPPESVQTIYNMVTETMAAIKD 427
+G N ++TAN SLLT++F I+ + A + ESV+T+ N+++ T+ IK
Sbjct: 354 RGLENGDATANGGGEARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKA 533
Query: 428 AVSYHS 433
A+ S
Sbjct: 534 ALQCES 551
>BI312112 similar to GP|22475195|gb homeodomain protein GhHOX1 {Gossypium
hirsutum}, partial (27%)
Length = 727
Score = 96.3 bits (238), Expect = 2e-20
Identities = 57/186 (30%), Positives = 101/186 (53%), Gaps = 2/186 (1%)
Frame = +2
Query: 247 NEPIGTSLFFCTTLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREFACILTGKHPENR 306
+EP+G + +++WL +SPN LF+FLR E R++WD S +++ A + G+ N
Sbjct: 62 SEPLGLIVCAVSSIWLPISPNVLFDFLRDETRRTEWDIMSNGGTVQSIANLAKGQDRGNA 241
Query: 307 VSLLRARDK-NEIFYLQESYKDTTASYVIYCPLDEQKLTHLATGSNPDDVVAFPSGFAII 365
V++ + K N ++ LQ+S ++ S V+Y P D + + TG + ++ PSGF+I+
Sbjct: 242 VTIQTIKSKENNMWILQDSCTNSYESMVVYAPADITGIQSVMTGCDSSNLAILPSGFSIV 421
Query: 366 PGGL-PRDGDKGKGNANSTANDESLLTISFHIIGKANNAASIPPESVQTIYNMVTETMAA 424
GL R SL TI+F I+ A+ A + ESV ++ ++V+ T+
Sbjct: 422 SDGLESRQMVITSRREEKNTEGGSLFTIAFQILTNASPTAKLTMESVDSMNSLVSCTLRH 601
Query: 425 IKDAVS 430
IK +++
Sbjct: 602 IKTSLN 619
>BQ139155 similar to GP|3925363|gb| homeodomain protein {Malus x domestica},
partial (24%)
Length = 505
Score = 95.1 bits (235), Expect = 5e-20
Identities = 50/139 (35%), Positives = 80/139 (56%), Gaps = 9/139 (6%)
Frame = +1
Query: 7 GLQIEASRDKALIKISPTKLVELLMDVNQWSTAFYNIVSGAR----ILGSIEGSYDEKMH 62
G EASR+ ++ I+ LVE LMD N+WS F +++ + I I G+ + +
Sbjct: 73 GFVSEASRESGVVIINSLALVETLMDSNRWSEMFPCVIARSSTTEVISSGINGTRNGALQ 252
Query: 63 VMSAEFHLPSPVIPTRKCVFARYSKQFTHNIWAVVDVSLEDILQSPSN-----NFHKRPS 117
+M AE + SP++P R+ F R+ KQ +WAVVDVS++ I ++ + + PS
Sbjct: 253 LMQAELQVLSPLVPVREVSFLRFCKQHAEGVWAVVDVSIDTIXETSAGAPTFLTCRRLPS 432
Query: 118 GCLIEGMPDGNSKVIWLEH 136
G +++ MP+G SKV W+EH
Sbjct: 433 GXVVQDMPNGYSKVTWVEH 489
>AW694953 similar to GP|14334996|gb At1g05230/YUP8H12_16 {Arabidopsis
thaliana}, partial (16%)
Length = 404
Score = 78.6 bits (192), Expect = 5e-15
Identities = 45/120 (37%), Positives = 66/120 (54%)
Frame = +2
Query: 188 VLIPQIGRTSFLKLADRMMRRFCANLGSTTKNPWIRLAPLPAGSADIRVMIANDMAGSTN 247
V+ Q G+ S LKLA+RM FCA + ++T + W L+ G+ D+RVM +
Sbjct: 53 VITNQDGKKSMLKLAERMCITFCAGVSASTAHTWTTLSG--TGADDVRVMTRKSV-NDPE 223
Query: 248 EPIGTSLFFCTTLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREFACILTGKHPENRV 307
P G L T+ WL V P R+F FL++E S+S+WD S +++ A I GK+ N V
Sbjct: 224 RPAGIVLSAATSFWLPVPPKRVFEFLKNENSKSEWDILSNGGVVQKMAHIANGKNTGNWV 403
>TC90604 weakly similar to PIR|B96760|B96760 probable homeobox protein
T9L24.43 [imported] - Arabidopsis thaliana, partial (8%)
Length = 1097
Score = 64.7 bits (156), Expect(2) = 2e-13
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Frame = +1
Query: 235 RVMIANDMAGSTNEPIGTSLFFCTTLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREF 294
RV + + T++P GT + TTLWL + ++F L+ RS+WD S + E
Sbjct: 583 RVSLRDTTDNDTSQPNGTVVTAATTLWLPLPAQKVFELLKDPTKRSQWDGLSCGNPMHEI 762
Query: 295 ACILTGKHPENRVSLLRA--RDKNEIFYLQESYKDTTASYVIYCPLDEQ 341
A I G + N +S++++ + ++ LQES+ SY+IY P+D +
Sbjct: 763 AHISNGPYHGNCISIIKSFIPTQRQMVILQESFTSPVGSYIIYAPIDRK 909
Score = 28.5 bits (62), Expect(2) = 2e-13
Identities = 11/17 (64%), Positives = 14/17 (81%)
Frame = +3
Query: 194 GRTSFLKLADRMMRRFC 210
GR S +KLADRM++ FC
Sbjct: 465 GRNSVIKLADRMVKMFC 515
>BI272824 similar to GP|1814424|gb|A homeodomain protein AHDP {Arabidopsis
thaliana}, partial (8%)
Length = 268
Score = 55.1 bits (131), Expect = 6e-08
Identities = 33/81 (40%), Positives = 45/81 (54%), Gaps = 4/81 (4%)
Frame = +1
Query: 307 VSLLRARDKN----EIFYLQESYKDTTASYVIYCPLDEQKLTHLATGSNPDDVVAFPSGF 362
VSLLRA N + LQE++ DT+ S V+Y P+D Q L + +G + V PSGF
Sbjct: 1 VSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDGQSLNVVMSGGDSAYVALLPSGF 180
Query: 363 AIIPGGLPRDGDKGKGNANST 383
AI+P G + G G +N T
Sbjct: 181 AIVPDG---NDPSGYGMSNGT 234
>TC91840 similar to PIR|T10695|T10695 transcription factor HD-zip -
Arabidopsis thaliana, partial (40%)
Length = 1043
Score = 41.2 bits (95), Expect = 8e-04
Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 7/180 (3%)
Frame = +3
Query: 10 IEASRDKALIKISPTKLVELLMDVNQWSTAFYNIVSGARILGSIEGSYDEKMHVMSAEFH 69
+ +R L+ + PT++ E+L D W V +L + G E +++ + +
Sbjct: 504 VSQTRACGLVGLEPTRVAEILKDRPLWFRDC-RAVDIVNVLPTANGGTIELLYM---QLY 671
Query: 70 LPSPVIPTRKCVFARYSKQFTHNIWAVVDVSLEDILQSPSN-------NFHKRPSGCLIE 122
P+ + P R RY+ + + SL++ PS PSG LI
Sbjct: 672 APTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIR 851
Query: 123 GMPDGNSKVIWLEHVEADYSKLSDLFRPLVTSALAFGATRWLTSIVRYIEWSETLKAPKL 182
G S + ++H++ + + ++ RPL S + + ++ + S + P++
Sbjct: 852 PCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESPMVLAQKTTMAALRHLRQISHEVSQPQM 1031
>CB894606 similar to GP|18076736|em HD-Zip protein {Zinnia elegans}, partial
(34%)
Length = 897
Score = 34.3 bits (77), Expect = 0.10
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +1
Query: 329 TASYVIYCPLDEQKLTHLATGSNPDDVVAFPSGFAIIPGGLPRDGDKGKGNANSTANDES 388
T S +I+ P+DE PDD PSGF IIP K N N T + S
Sbjct: 436 TCSELIFAPIDEMF---------PDDAPLVPSGFRIIPLDSKPGDKKDAVNTNRTLDLTS 588
Query: 389 LLTIS-FHIIGKANNAASIPPESVQTI 414
L +S G A++++S SV TI
Sbjct: 589 GLEVSPATTHGGADSSSSQNTRSVLTI 669
>AW686191 similar to PIR|T01364|T01 homeodomain transcription factor
(ATHB-14) [imported] - Arabidopsis thaliana, partial
(25%)
Length = 661
Score = 30.4 bits (67), Expect = 1.5
Identities = 41/176 (23%), Positives = 69/176 (38%), Gaps = 9/176 (5%)
Frame = +2
Query: 116 PSGCLIEGMPDGNSKVIWLEHVEADYSKLSDLFRPLVTSALAFGATRWLTSIVRYIEWSE 175
PSG LI G S + ++HV+ D + ++ RPL S+ + ++ + ++
Sbjct: 8 PSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIKQIAQ 187
Query: 176 TLKAPKLIADAGVLIPQIGRTSFLKLADRMMRRFCANLGSTTKNPWIRLAPLPAGSADIR 235
++ I G P + RT + R+ R F + + W L G D+
Sbjct: 188 --ESSGEIQYGGGRQPAVLRT----FSQRLCRGFNDAVNGFVDDGWSLLG--NDGVEDVT 343
Query: 236 VMI---ANDMAGSTNEPI------GTSLFFCTTLWLNVSPNRLFNFLRHEKSRSKW 282
+ + N GS + G + L NV P L FLR + RS+W
Sbjct: 344 IAVNSSPNKFLGSNYSSMFPTFGGGVLCAKASMLLQNVPPALLVRFLR--EHRSEW 505
>TC76821 homologue to GP|17026394|gb|AAL33919.1 UDP-glucose
pyrophosphorylase {Amorpha fruticosa}, complete
Length = 1933
Score = 28.5 bits (62), Expect = 5.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 220 PWIRLAPLPAGSADIRVMIANDMAGSTNEPIGTSL 254
P+ LAP PAGS+DI+ ++ + N +GT++
Sbjct: 365 PYDTLAPTPAGSSDIKNLLDKLVVLKLNGGLGTTM 469
>TC93761
Length = 471
Score = 28.1 bits (61), Expect = 7.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 318 IFYLQESYKDTTASYVIYCPLDEQKLTHLATGS 350
I+Y E+ KDT +S++ L +QKL +L S
Sbjct: 432 IYYTMENLKDTPSSHIYKRILGQQKLMYLVKNS 334
>TC89064 similar to GP|17381038|gb|AAL36331.1 putative cyclophylin protein
{Arabidopsis thaliana}, partial (30%)
Length = 1125
Score = 28.1 bits (61), Expect = 7.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 80 CVFARYSKQFTHNIWAVVDVSLEDILQSPSNNFH 113
CV+ S +HN W ++ S +++Q+P NN+H
Sbjct: 1124 CVYFSSSSCASHN-WKNLNQSTMNLIQNPRNNYH 1026
>TC87740 similar to PIR|D84431|D84431 probable endosomal protein [imported]
- Arabidopsis thaliana, partial (39%)
Length = 989
Score = 28.1 bits (61), Expect = 7.2
Identities = 15/26 (57%), Positives = 16/26 (60%)
Frame = -3
Query: 144 LSDLFRPLVTSALAFGATRWLTSIVR 169
L L PLVTS AFG+ R L SI R
Sbjct: 762 LHQLHCPLVTSTRAFGSVRTLISITR 685
>TC77083 similar to PIR|H96668|H96668 protein F1N19.9 [imported] -
Arabidopsis thaliana, complete
Length = 1227
Score = 28.1 bits (61), Expect = 7.2
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -1
Query: 81 VFARYSKQFTHNIWAVVDVSLEDILQSPSNNFHKRPSGCLIEG----MPDGNSKVIW 133
VFA+ S ++T+ V +L+ L +PS + CLI+G + + NS +W
Sbjct: 627 VFAKRSMKYTYVSCGTVCRALKTRLYAPSIKDCSNSTACLIQGFSRAVDESNSNSVW 457
>TC78959 similar to GP|22136402|gb|AAM91279.1 putative WD-40 repeat protein
{Arabidopsis thaliana}, partial (77%)
Length = 1261
Score = 27.7 bits (60), Expect = 9.4
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 218 KNPWIRLAPLPAGSADIRVMIANDMAGSTNEPIGTSLFFC 257
K PW L+PLP +A + N AGS G S +C
Sbjct: 449 KGPWGSLSPLPENNA----IAVNTQAGSVFAASGDSCAYC 556
>TC80678
Length = 681
Score = 27.7 bits (60), Expect = 9.4
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +2
Query: 45 SGARILGSIEGSYDEKMHVMSAEFHLPSPVIPTRKCVFAR---YSKQFTHNIWAVV 97
S A + SI G EK + S ++ P V + Y+K F HNIW ++
Sbjct: 44 SAAALKQSISGMNSEKQSLSSNKWRAFFRRSPLEDVVVVKNNVYNKGFLHNIWEII 211
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,402,859
Number of Sequences: 36976
Number of extensions: 208297
Number of successful extensions: 944
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of query: 449
length of database: 9,014,727
effective HSP length: 99
effective length of query: 350
effective length of database: 5,354,103
effective search space: 1873936050
effective search space used: 1873936050
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146555.16