BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146548.14 - phase: 0
(180 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL389608 similar to PIR|T07714|T07 probable ABC-type transport p... 204 2e-53
AW775090 similar to PIR|T07717|T077 probable ABC-type transport ... 150 2e-37
TC88529 similar to PIR|T07712|T07712 probable ABC-type transport... 134 3e-32
TC92682 similar to GP|20196947|gb|AAM14842.1 putative ABC transp... 81 3e-16
AW684963 similar to PIR|T07717|T07 probable ABC-type transport p... 62 2e-10
BQ147012 similar to GP|21553579|gb contains similarity to ABC tr... 45 1e-05
BQ153556 homologue to GP|4586576|dbj multidrug resistance protei... 44 3e-05
TC84278 similar to PIR|T02567|T02567 probable ATP-binding casset... 44 3e-05
TC80149 similar to GP|22137204|gb|AAM91447.1 At2g01320/F10A8.20 ... 44 5e-05
TC88124 weakly similar to PIR|T45888|T45888 ABC transporter-like... 42 1e-04
BE205528 similar to GP|12382006|d putative ABC transporter prote... 42 1e-04
TC93816 similar to GP|9279716|dbj|BAB01273.1 ABC transporter {Ar... 42 1e-04
TC82289 similar to GP|12382007|dbj|BAB21276. putative ABC transp... 42 1e-04
TC89547 similar to GP|12382007|dbj|BAB21276. putative ABC transp... 42 2e-04
AW685718 homologue to GP|20522008|d pleiotropic drug resistance ... 42 2e-04
TC86205 similar to PIR|A86289|A86289 probable ABC transporter [i... 42 2e-04
AJ499813 similar to GP|9279716|db ABC transporter {Arabidopsis t... 42 2e-04
AL382068 homologue to GP|9279716|dbj ABC transporter {Arabidopsi... 41 3e-04
TC77058 similar to GP|10176907|dbj|BAB10100. ABC transporter {Ar... 40 7e-04
TC78215 similar to GP|10177549|dbj|BAB10828. ABC transporter-lik... 38 0.002
>AL389608 similar to PIR|T07714|T07 probable ABC-type transport protein
T23J7.80 - Arabidopsis thaliana, partial (12%)
Length = 453
Score = 204 bits (518), Expect = 2e-53
Identities = 97/113 (85%), Positives = 107/113 (93%)
Frame = -2
Query: 68 FVDGSLQCVGYPKELKGRYGGTYVFAMTTSSDHEKDVENMVQRLTPNANKIYHLSGTQKF 127
FV+GSLQCVG PKELK RYGG YVF MTTSSDHEKDVEN+VQ+LTPNANKIYHLSGTQKF
Sbjct: 446 FVNGSLQCVGNPKELKARYGGIYVFTMTTSSDHEKDVENIVQQLTPNANKIYHLSGTQKF 267
Query: 128 ELPKEEIKMANVFRAIEAAKRNFTVFAWGLSDTTLEDVFIKVAREAQAFDTLT 180
ELPKE++K+ANVF+A+E AKRNFTVFAWGL+DTTLEDVFIKVAREA AFDTL+
Sbjct: 266 ELPKEDVKIANVFQAVEVAKRNFTVFAWGLADTTLEDVFIKVAREAHAFDTLS 108
>AW775090 similar to PIR|T07717|T077 probable ABC-type transport protein
T23J7.110 - Arabidopsis thaliana, partial (10%)
Length = 451
Score = 150 bits (380), Expect = 2e-37
Identities = 71/98 (72%), Positives = 86/98 (87%)
Frame = -3
Query: 83 KGRYGGTYVFAMTTSSDHEKDVENMVQRLTPNANKIYHLSGTQKFELPKEEIKMANVFRA 142
KG YGGTYVF+M T DHE +VE +VQ+L+PNA KIYH+SGTQKFELPK+E+K++NVF+A
Sbjct: 449 KGTYGGTYVFSMATYIDHESNVEKLVQQLSPNAKKIYHISGTQKFELPKDEVKISNVFQA 270
Query: 143 IEAAKRNFTVFAWGLSDTTLEDVFIKVAREAQAFDTLT 180
+EAAKRNF V AWGL+ T+LEDVFIKVAREAQ F TL+
Sbjct: 269 VEAAKRNFPVSAWGLAYTSLEDVFIKVAREAQPFHTLS 156
>TC88529 similar to PIR|T07712|T07712 probable ABC-type transport protein
T23J7.60 - Arabidopsis thaliana, partial (38%)
Length = 1560
Score = 134 bits (336), Expect = 3e-32
Identities = 78/188 (41%), Positives = 113/188 (59%), Gaps = 14/188 (7%)
Frame = +1
Query: 1 MKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTTHSMEEADA 60
MKRRLSVAI+LIGDPK+V +DEP+TG+DP +R+ +W++I+ AK+ RAI+LTTHSMEEAD
Sbjct: 598 MKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKKGRAIVLTTHSMEEADI 777
Query: 61 LCDRLGIFVDGSLQCVGYPKELKGRYGGTYV--FAMTTSSDHEKDVENMVQRLTPNANKI 118
L DR+GI G L+C+G LK R+G ++ + ++DH + V K
Sbjct: 778 LSDRIGIMAKGKLRCIGTSIRLKSRFGTGFITNISFGNNNDHSPANGDTVSARHHEPVKQ 957
Query: 119 Y---HLSGTQKFE--------LPKE-EIKMANVFRAIEAAKRNFTVFAWGLSDTTLEDVF 166
+ HL K E +P E E + N F ++ K F + L TTLE+VF
Sbjct: 958 FFKNHLDVVPKEENNNFLTYVIPHEKEALLTNFFSELQDRKEEFGISDIQLGLTTLEEVF 1137
Query: 167 IKVAREAQ 174
+ +A++A+
Sbjct: 1138LNIAKQAE 1161
>TC92682 similar to GP|20196947|gb|AAM14842.1 putative ABC transporter
{Arabidopsis thaliana}, partial (20%)
Length = 761
Score = 80.9 bits (198), Expect = 3e-16
Identities = 39/71 (54%), Positives = 52/71 (72%), Gaps = 3/71 (4%)
Frame = +1
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDR---AIILTTHSMEEA 58
KR+LSVAI++IGDP +V +DEPSTG+DP +++ +W+VI R A+ILTTHSM EA
Sbjct: 544 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTXRXKTAVILTTHSMNEA 723
Query: 59 DALCDRLGIFV 69
ALC + I V
Sbjct: 724 QALCTXIXIMV 756
>AW684963 similar to PIR|T07717|T07 probable ABC-type transport protein
T23J7.110 - Arabidopsis thaliana, partial (23%)
Length = 635
Score = 61.6 bits (148), Expect = 2e-10
Identities = 31/35 (88%), Positives = 31/35 (88%)
Frame = +2
Query: 1 MKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCL 35
MKRRL VAISLIGDP VVYMDEPSTGL PASRK L
Sbjct: 530 MKRRLXVAISLIGDPTVVYMDEPSTGLXPASRKNL 634
>BQ147012 similar to GP|21553579|gb contains similarity to ABC transporter
ATP-binding protein {Arabidopsis thaliana}, partial
(44%)
Length = 556
Score = 45.4 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 40/63 (63%)
Frame = +2
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTTHSMEEADAL 61
KRRL++AI L+ P ++ +DEP GLD +R + ++K K++ +++ +H + E +L
Sbjct: 200 KRRLALAIQLVQIPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLREFASL 379
Query: 62 CDR 64
D+
Sbjct: 380 VDQ 388
>BQ153556 homologue to GP|4586576|dbj multidrug resistance protein {Cicer
arietinum}, partial (44%)
Length = 387
Score = 43.9 bits (102), Expect = 3e-05
Identities = 23/73 (31%), Positives = 47/73 (63%), Gaps = 2/73 (2%)
Frame = +2
Query: 3 RRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWN-VIKLAK-QDRAIILTTHSMEEADA 60
+R+++A +L P+V+ +DEP++ LDP S + + ++KL K Q +I+ +HS+++
Sbjct: 65 QRVALARTLANSPEVLLLDEPTSALDPISTENIEGALMKLNKNQGMTLIMVSHSIKQIQR 244
Query: 61 LCDRLGIFVDGSL 73
+ D + + VDG +
Sbjct: 245 MADVVCLVVDGEI 283
>TC84278 similar to PIR|T02567|T02567 probable ATP-binding cassette protein
T16B24.1 - Arabidopsis thaliana, partial (28%)
Length = 835
Score = 43.9 bits (102), Expect = 3e-05
Identities = 26/83 (31%), Positives = 45/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVI-KLAKQDRAIILTTHSME-EAD 59
+RR+S+ I +I DP V+++DEP++GLD S + V+ ++A+ +I++ H
Sbjct: 186 RRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRIL 365
Query: 60 ALCDRLGIFVDGSLQCVGYPKEL 82
L DR+ G G P +L
Sbjct: 366 GLLDRMIFLSRGQTVYSGSPSQL 434
>TC80149 similar to GP|22137204|gb|AAM91447.1 At2g01320/F10A8.20
{Arabidopsis thaliana}, partial (44%)
Length = 1366
Score = 43.5 bits (101), Expect = 5e-05
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDP-ASRKCLWNVIKLAKQDRAIILTTHSME-EAD 59
K+RLS+A L+ P V++ DEP+TGLD + K + + +LA +I + H
Sbjct: 795 KKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLRQLALDGHTVICSIHQPRGSVY 974
Query: 60 ALCDRLGIFVDGSLQCVG 77
+ D + + DGSL G
Sbjct: 975 SKFDDIVLLTDGSLVYAG 1028
>TC88124 weakly similar to PIR|T45888|T45888 ABC transporter-like protein -
Arabidopsis thaliana, partial (27%)
Length = 1641
Score = 42.0 bits (97), Expect = 1e-04
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIK-LAKQDRAIILTTH 53
++RL++A+ L+ +P +++MDEP++GLD + + +K + R + T H
Sbjct: 72 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVTTGRTTVCTIH 230
>BE205528 similar to GP|12382006|d putative ABC transporter protein {Oryza
sativa (japonica cultivar-group)}, partial (14%)
Length = 617
Score = 42.0 bits (97), Expect = 1e-04
Identities = 15/53 (28%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = +1
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIK-LAKQDRAIILTTH 53
++RL++A+ L+ +P +++MDEP++GLD + + ++ R ++ T H
Sbjct: 274 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIH 432
>TC93816 similar to GP|9279716|dbj|BAB01273.1 ABC transporter {Arabidopsis
thaliana}, partial (16%)
Length = 743
Score = 42.0 bits (97), Expect = 1e-04
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIK-LAKQDRAIILTTH 53
++RL++A+ LI +P +++MDEP++GLD + + ++ R ++ T H
Sbjct: 43 RKRLTIAVELIANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 201
>TC82289 similar to GP|12382007|dbj|BAB21276. putative ABC transporter
protein {Oryza sativa (japonica cultivar-group)},
partial (25%)
Length = 1108
Score = 42.0 bits (97), Expect = 1e-04
Identities = 15/53 (28%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = +3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIK-LAKQDRAIILTTH 53
++RL++A+ L+ +P +++MDEP++GLD + + ++ R ++ T H
Sbjct: 219 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIH 377
>TC89547 similar to GP|12382007|dbj|BAB21276. putative ABC transporter
protein {Oryza sativa (japonica cultivar-group)},
partial (28%)
Length = 1283
Score = 41.6 bits (96), Expect = 2e-04
Identities = 15/53 (28%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = +3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIK-LAKQDRAIILTTH 53
++RL++A+ L+ +P +++MDEP++GLD + + ++ R ++ T H
Sbjct: 84 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 242
>AW685718 homologue to GP|20522008|d pleiotropic drug resistance like protein
{Nicotiana tabacum}, partial (12%)
Length = 613
Score = 41.6 bits (96), Expect = 2e-04
Identities = 15/53 (28%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = +2
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIK-LAKQDRAIILTTH 53
++RL++A+ L+ +P +++MDEP++GLD + + ++ R ++ T H
Sbjct: 185 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 343
>TC86205 similar to PIR|A86289|A86289 probable ABC transporter [imported] -
Arabidopsis thaliana, partial (52%)
Length = 2721
Score = 41.6 bits (96), Expect = 2e-04
Identities = 15/53 (28%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = +1
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIK-LAKQDRAIILTTH 53
++RL++A+ L+ +P +++MDEP++GLD + + ++ R ++ T H
Sbjct: 1150 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1308
>AJ499813 similar to GP|9279716|db ABC transporter {Arabidopsis thaliana},
partial (13%)
Length = 573
Score = 41.6 bits (96), Expect = 2e-04
Identities = 15/53 (28%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = -3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIK-LAKQDRAIILTTH 53
++RL++A+ L+ +P +++MDEP++GLD + + ++ R ++ T H
Sbjct: 442 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 284
>AL382068 homologue to GP|9279716|dbj ABC transporter {Arabidopsis
thaliana}, partial (6%)
Length = 274
Score = 40.8 bits (94), Expect = 3e-04
Identities = 15/52 (28%), Positives = 32/52 (60%), Gaps = 1/52 (1%)
Frame = +3
Query: 3 RRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIK-LAKQDRAIILTTH 53
+RL++A+ L+ +P +++MDEP++GLD + + ++ R ++ T H
Sbjct: 3 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 158
>TC77058 similar to GP|10176907|dbj|BAB10100. ABC transporter {Arabidopsis
thaliana}, partial (95%)
Length = 2396
Score = 39.7 bits (91), Expect = 7e-04
Identities = 18/64 (28%), Positives = 38/64 (59%)
Frame = +3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTTHSMEEADAL 61
+ R+S+A +L +P ++ +DEP+ LD + C+W L K +R +++ +HS + + +
Sbjct: 783 RMRISLARALFMNPTILLLDEPTNHLDLEA--CVWLEESLKKFERILVVISHSQDFLNGV 956
Query: 62 CDRL 65
C +
Sbjct: 957 CTNI 968
>TC78215 similar to GP|10177549|dbj|BAB10828. ABC transporter-like protein
{Arabidopsis thaliana}, partial (36%)
Length = 1176
Score = 37.7 bits (86), Expect = 0.002
Identities = 20/86 (23%), Positives = 44/86 (50%)
Frame = +1
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTTHSMEEADAL 61
K+R+++A +L+ DPK++ +DE ++ LD S + + + + R +++ H +
Sbjct: 430 KQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKT- 606
Query: 62 CDRLGIFVDGSLQCVGYPKELKGRYG 87
+ + + DG + G EL + G
Sbjct: 607 ANTVAVVSDGQIVESGTHDELLEKNG 684
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,422,553
Number of Sequences: 36976
Number of extensions: 49400
Number of successful extensions: 255
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of query: 180
length of database: 9,014,727
effective HSP length: 90
effective length of query: 90
effective length of database: 5,686,887
effective search space: 511819830
effective search space used: 511819830
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146548.14