BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146527.6 - phase: 0 /pseudo
(1019 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 216 4e-56
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 193 3e-49
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 174 2e-43
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 167 2e-41
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 156 4e-38
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 133 3e-31
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 120 2e-27
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 120 3e-27
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 74 9e-26
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 107 2e-23
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 100 2e-22
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 99 8e-21
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 91 2e-18
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 86 9e-17
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 85 1e-16
BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F... 64 2e-13
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 71 2e-12
BE239977 weakly similar to GP|23237899|db polyprotein-like {Oryz... 66 6e-11
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 66 6e-11
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 64 4e-10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 216 bits (550), Expect = 4e-56
Identities = 106/241 (43%), Positives = 155/241 (63%)
Frame = +2
Query: 661 VCKLKRSLYGLKQAPRVWFEKFRSTLLGFEFSQSRYDPSLFLQRTPKGMVVLLVYVDDIV 720
VC+L++S+YGLKQA R W+ K +L+ F + QS D SLF + LLVYVDDIV
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 721 VTGSDQDAISRIKNLLHSTFHMKELGRLTYFLGLEVHYHHEGVFLNQQKYIQDLVQLAGL 780
+ G+D I +K L F +K+LG L YFLGLEV +G+ LNQ+KY +L++ +G
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 781 TNATLVDTPMEVNVKYRRDEGDHLDDPTQYRKLVGSLIYVTITRPDISFAVHTVSKFMQA 840
TP ++++K + +D TQYR+L+G LIY+T TRPDISFAV +S+F+
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 841 PRHFHLSAVQQIIRYLLGTLKRGLFFPVGSSIKLQAYSDADWAGCPDTRKSTTGWCMFLG 900
P+ H A ++++YL +GLF+ S++KL +++D+DWA CP TRKS TG+ +FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
Query: 901 N 901
+
Sbjct: 740 S 742
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 193 bits (490), Expect = 3e-49
Identities = 91/190 (47%), Positives = 126/190 (65%)
Frame = +1
Query: 535 WQKAIESELLALEENQTWDIVPCPSSVKPLGSKFVFSIKLRSDGSIDRYKAHLVVLGNKQ 594
W +A+++E AL +N+TWD+VP P K +G K+V+ +K DGS++++KA LV G Q
Sbjct: 97 WLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVAKGFSQ 276
Query: 595 EYGLDYDETFAPVAKMTTVRTILAIAASQAWPLHQMDVKNAFLHGDLQEEVYIKLPNGMP 654
G DY ETF+PV K T+R IL IA + W + Q+D+ NAFL+G LQEEVY+ P G
Sbjct: 277 TLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQPQGFE 456
Query: 655 TPSPNTVCKLKRSLYGLKQAPRVWFEKFRSTLLGFEFSQSRYDPSLFLQRTPKGMVVLLV 714
+ + VCKL +SLYGLKQAPR W+E S + F F++SR DPSL + + L +
Sbjct: 457 AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGACIYLXI 636
Query: 715 YVDDIVVTGS 724
YVDDI++TGS
Sbjct: 637 YVDDILITGS 666
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 174 bits (441), Expect = 2e-43
Identities = 80/217 (36%), Positives = 137/217 (62%)
Frame = +1
Query: 754 LEVHYHHEGVFLNQQKYIQDLVQLAGLTNATLVDTPMEVNVKYRRDEGDHLDDPTQYRKL 813
+EV + EG+++ Q+KY+ DL++ G+ + L P+ K +DE D T+Y+++
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 814 VGSLIYVTITRPDISFAVHTVSKFMQAPRHFHLSAVQQIIRYLLGTLKRGLFFPVGSSIK 873
VG L+Y+ TRPD+ + + +S+FM P H+ AV++++RYL GT+ G+ + S K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 874 LQAYSDADWAGCPDTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEAEYRAMSAACSEI 933
L+AY+D+D+AG D RKST+G+ L + +SW KKQ V+ S+T+AE+ A + +
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 934 IWLRGLLTELGFSQDQPTPLHADNTSAIQIAANPVYH 970
+W+R +L +LG++Q ++ DN S I+++ NPV H
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 167 bits (423), Expect = 2e-41
Identities = 89/205 (43%), Positives = 130/205 (63%), Gaps = 1/205 (0%)
Frame = -1
Query: 503 SKPPERYINCMTATLSSIPIPSSYKQAMENDCWQKAIESELLALEENQTWDIVPCPSSVK 562
S+ PE + M L+ IP SY++AME+ W++++ +E A+ +N TW P K
Sbjct: 615 SQYPEAHCAFMV-NLNENHIPRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKK 439
Query: 563 PLGSKFVFSIKLRSDGSIDRYKAHLVVLGNKQEYGLDYDETFAPVAKMTTVRTILAIAAS 622
+ S+++F+IK ++DGSI+R K LV G YG DY ETFAPVAK+ T+R +L++A +
Sbjct: 438 AVSSRWIFTIKYKADGSIERKKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVN 259
Query: 623 QAWPLHQMDVKNAFLHGDLQEEVYIKLPNGMP-TPSPNTVCKLKRSLYGLKQAPRVWFEK 681
W L QMDVKNAFL G+L++EVY+ P G+ V +LK+++YGLKQ+PR W+ K
Sbjct: 258 LGWGLWQMDVKNAFLQGELEDEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNK 79
Query: 682 FRSTLLGFEFSQSRYDPSLFLQRTP 706
+TL G F +S D +LF TP
Sbjct: 78 LSTTLNGRGFRKSELDHTLFTLTTP 4
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 156 bits (394), Expect = 4e-38
Identities = 78/247 (31%), Positives = 148/247 (59%), Gaps = 4/247 (1%)
Frame = +3
Query: 523 PSSYKQAMENDCWQKAIESELLALEENQTWDIVPCPSSVKPLGSKFVFSIKLRSDGSIDR 582
P+++++A++++ W+ ++ +E+ A E N TW++ S K +G K++F KL +G I++
Sbjct: 42 PTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIEK 221
Query: 583 YKAHLVVLGNKQEYGLDYDETFAPVAKMTTVRTILAIAAS---QAWPLHQMDVKNAFLHG 639
YKA LV G Q+YG+DY E FAPVA+ T+R ++A+AA + M ++ +
Sbjct: 222 YKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCMEN 401
Query: 640 DLQEEVYIKLPNGMPTPSPNTVCKLKRSLYGLKQAPRVWFEKFRSTLLGFEFSQSRYDPS 699
+++ + I N ++KR+LYGLKQAPR W+ + + F + Y+ +
Sbjct: 402 *MRKFLLI---NHRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCPYEHT 572
Query: 700 LFLQRTPKGMVVLL-VYVDDIVVTGSDQDAISRIKNLLHSTFHMKELGRLTYFLGLEVHY 758
LF++ + G ++++ +YVDD++ G+D++ K + F+M +LG++ YFLG+EV
Sbjct: 573 LFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGVEVTQ 752
Query: 759 HHEGVFL 765
+ +G+++
Sbjct: 753 NEKGIYI 773
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 133 bits (335), Expect = 3e-31
Identities = 67/141 (47%), Positives = 96/141 (67%), Gaps = 1/141 (0%)
Frame = -2
Query: 580 IDRYKAHLVVLGNKQEYGLDYDETFAPVAKMTTVRTILAIAASQAWPLHQMDVKNAFLHG 639
I R K+ LVV G Q+ G+DYDE F+PVA+M +R ++A AA + L+QMDVK+AF++G
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 640 DLQEEVYIKLPNGMPTPS-PNTVCKLKRSLYGLKQAPRVWFEKFRSTLLGFEFSQSRYDP 698
DL+EEV++K P G PN V +L ++LYGLKQAPR W+E+ LL F + + D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 699 SLFLQRTPKGMVVLLVYVDDI 719
+LFL + ++++ VYVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 120 bits (302), Expect = 2e-27
Identities = 57/132 (43%), Positives = 84/132 (63%)
Frame = +2
Query: 880 ADWAGCPDTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEAEYRAMSAACSEIIWLRGL 939
+DWAG +TRKST+G+ LG ISW KKQ V+ S+ EAEY A ++ ++ +WLR +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 940 LTELGFSQDQPTPLHADNTSAIQIAANPVYHERTKHIEVDCHSIREAYDRRIINLPHVST 999
L + Q+ PT ++ DN SAI ++ NPV+H R+KHI++ H IRE + + + + T
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1000 SVQTADIFTKSL 1011
+ ADIFTK L
Sbjct: 362 EEKIADIFTKPL 397
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 120 bits (300), Expect = 3e-27
Identities = 64/164 (39%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Frame = +1
Query: 848 AVQQIIRYLLGTLKRGLFFPVGSSIK--LQAYSDADWAGCPDTRKSTTGWCMFLGNAPIS 905
A++ +++YL +LK L + + + L+ Y DAD+AG DTRKS +G+ L IS
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 906 WKCKKQDSVSKSSTEAEYRAMSAACSEIIWLRGLLTELGFSQDQPTPLHADNTSAIQIAA 965
WK +Q V+ S+T+AEY A + IWL+G++ ELG +Q+ +H D+ SAI +A
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEY-VKIHCDSQSAIHLAN 360
Query: 966 NPVYHERTKHIEVDCHSIREAYDRRIINLPHVSTSVQTADIFTK 1009
+ VYHERTKHI++ H IR+ + + I + +++ AD+FTK
Sbjct: 361 HQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 74.3 bits (181), Expect(2) = 9e-26
Identities = 34/91 (37%), Positives = 55/91 (60%)
Frame = +3
Query: 925 AMSAACSEIIWLRGLLTELGFSQDQPTPLHADNTSAIQIAANPVYHERTKHIEVDCHSIR 984
++ AC E IW++ L+ ELG Q+Q T ++ D+ SA+ IA NP +H RTKHI + H +R
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQIT-VYCDSQSALHIARNPAFHSRTKHIGIQYHFVR 404
Query: 985 EAYDRRIINLPHVSTSVQTADIFTKSLTRQR 1015
E + +++ + T+ AD TKS+ +
Sbjct: 405 EVVEEGSVDMQKIHTNDNLADAMTKSINTDK 497
Score = 62.0 bits (149), Expect(2) = 9e-26
Identities = 34/77 (44%), Positives = 48/77 (62%)
Frame = +1
Query: 849 VQQIIRYLLGTLKRGLFFPVGSSIKLQAYSDADWAGCPDTRKSTTGWCMFLGNAPISWKC 908
V++I+RY+ GT + F GS + ++ Y D+D+AG D RKSTTG+ L +SW
Sbjct: 1 VKRIMRYIKGTSGVAVCFG-GSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 909 KKQDSVSKSSTEAEYRA 925
K Q V+ S+TEAEY A
Sbjct: 178 KLQTVVALSTTEAEYMA 228
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 107 bits (268), Expect = 2e-23
Identities = 57/133 (42%), Positives = 76/133 (56%)
Frame = +1
Query: 284 SFQEFLQSNGIISQRSCPSTP*QNGVAERKNRHLLDVVRTLLLESHVPSRFWCEALSTAV 343
SF F+ + TP QNGVAER NR LL+ R +L + + FW EA+ TA
Sbjct: 28 SF*HFVNKRVL*GNSXVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTAC 207
Query: 344 HLINRMPSPSIGNESPFTRLYGHPPNYSTLRVFGCVCYVHLPPQERTKFTAQSVECAFLG 403
++INR PS I ++P G P +YS+L VFGC YV QERTK +S +C FLG
Sbjct: 208 YVINRSPSTVIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLG 387
Query: 404 YSPHQKGFLCYDP 416
Y+ + KG+ +DP
Sbjct: 388 YADNVKGYXLWDP 426
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 100 bits (249), Expect(2) = 2e-22
Identities = 61/171 (35%), Positives = 90/171 (51%), Gaps = 4/171 (2%)
Frame = +1
Query: 279 EYMSHSFQEFLQSNGIISQRSCPSTP*QNGVAERKNRHLLDVVRTLLLESHVPS--RFWC 336
E+ S F EF ++GI ++ P P QNGVAER R LL+ R +L + + + W
Sbjct: 316 EFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWV 495
Query: 337 EALSTAVHLINRMPSPSIGNESPFTRLYGHPPNYSTLRVFGCVCYVHLPPQERTKFTAQS 396
EA STA HL+NR P ++ + P G+ +YS LR+FGC Y + K ++
Sbjct: 496 EAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALV---NDGKLAPRA 666
Query: 397 VECAFLGYSPHQKGF--LCYDPNLRRIRVSRNVIFQENKYFFASHHDLVSS 445
EC FL Y+ KG+ C DP +++ +SR+V F E+ + VSS
Sbjct: 667 GECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDALLSSGKQSFVSS 819
Score = 24.3 bits (51), Expect(2) = 2e-22
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 214 LGCGTSYISCSLQIFCNFY**L*SFHMGLFSAIKR*SLFHIQ 255
LG SY ++ +++** S +GLF A+ +* HIQ
Sbjct: 120 LGTFKSYFLWRTPLYDDYH**FSSEGLGLFFAV*K*DFSHIQ 245
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 99.0 bits (245), Expect = 8e-21
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 3/123 (2%)
Frame = +1
Query: 824 RPDISFAVHTVSKFMQAPRHFHLSAVQQIIRYLLGTLKRGLFFPVGSS---IKLQAYSDA 880
RPDI ++V +SKFM PR HL A +I+RY+ GT++ GL FP G+ +L YSD+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 881 DWAGCPDTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEAEYRAMSAACSEIIWLRGLL 940
DW G R+ST+G+ +A ISW KKQ + SS EAEY A + A + +WL ++
Sbjct: 301 DWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 941 TEL 943
EL
Sbjct: 472 KEL 480
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 91.3 bits (225), Expect = 2e-18
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 5/114 (4%)
Frame = -2
Query: 342 AVHLINRMPSPSIGNESPFTRLYGHPPNYSTLRVFGCVCYVHLPPQERTKFTAQSVECAF 401
A +LINR+P+ + +++PF L P+ + +RVFGC+CYV +P + R K A+S + F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 402 LGYSPHQKGFLCYDPNLRRIRVSRNVIFQENKYFFASHH-----DLVSSPISIL 450
+GYS QKG+ CYDP RR+ VSR+V F E + ++ + DL S +L
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLTSDKAGVL 363
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 85.5 bits (210), Expect = 9e-17
Identities = 39/92 (42%), Positives = 63/92 (68%)
Frame = +2
Query: 548 ENQTWDIVPCPSSVKPLGSKFVFSIKLRSDGSIDRYKAHLVVLGNKQEYGLDYDETFAPV 607
+ QT +V P+ VKP+G ++++ IK DG++ +YKA LV G ++ G+D+DE FAPV
Sbjct: 47 QKQTLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPV 226
Query: 608 AKMTTVRTILAIAASQAWPLHQMDVKNAFLHG 639
++ T+ +LA+AA+ +H +DVK AFL+G
Sbjct: 227 VRIETI*LLLALAATNGC*IHHIDVKIAFLNG 322
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 85.1 bits (209), Expect = 1e-16
Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Frame = +1
Query: 673 QAPRVWFEKFRSTLLGFEFSQSRYDPSLFLQRTPK-GMVVLLVYVDDIVVTGSDQDAISR 731
Q+PR WF++F + F + Q + D ++F++ + +L+VYVDDI +TG I R
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 732 IKNLLHSTFHMKELGRLTYFLGLEVHYHHEGVFLNQQKYIQDLVQLAGLTNATLVDTPME 791
+KNLL F +K+LG L YFLG+EV +G ++Q+KY+ DL++ + + P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDPYG 360
Query: 792 VNVKYR 797
N + R
Sbjct: 361 CNCEAR 378
Score = 52.4 bits (124), Expect = 9e-07
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +2
Query: 787 DTPMEVNVKYRRDEGDHLDDPTQYRKLVGSLIYVTITRPDISFAVHTVSKFM 838
+TPM+ VK + L D +Y++LVG LIY++ TRPDISF V T+S+FM
Sbjct: 347 ETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (5%)
Length = 721
Score = 63.5 bits (153), Expect(2) = 2e-13
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = -3
Query: 923 YRAMSAACSEIIWLRGLLTELGFSQDQPTPLHADNTSAIQ-IAANPVYHERTKHIEVDCH 981
YR++ + EI WL LL +L F+ +P L+ DN SA + IAAN + ERTKHIE+DCH
Sbjct: 374 YRSI*STICEIKWLTYLLNDLKFTFIKPAMLYCDNQSAARHIAANSSFLERTKHIELDCH 195
Query: 982 SIREAYDRRIINLPHVSTSV 1001
+R ++ ++ H+ +S+
Sbjct: 194 IVRVKLQLKLFHILHILSSL 135
Score = 30.8 bits (68), Expect(2) = 2e-13
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -2
Query: 881 DWAGCPDTRKSTTGWCMFLGNAPISWKCKKQ 911
D + C DT KS + +C+FLG++ I WK K+
Sbjct: 486 D*SSCLDT*KSISYFCIFLGDSLICWKS*KK 394
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 71.2 bits (173), Expect = 2e-12
Identities = 35/74 (47%), Positives = 52/74 (69%)
Frame = -3
Query: 278 GEYMSHSFQEFLQSNGIISQRSCPSTP*QNGVAERKNRHLLDVVRTLLLESHVPSRFWCE 337
GEY S++F+ L +GI+ Q SCP TP QNGVA+RKN+HL++V R+L+ +++V
Sbjct: 218 GEYTSYAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQANV------- 60
Query: 338 ALSTAVHLINRMPS 351
STA +LIN +P+
Sbjct: 59 --STACYLINWIPT 24
>BE239977 weakly similar to GP|23237899|db polyprotein-like {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 514
Score = 66.2 bits (160), Expect = 6e-11
Identities = 29/71 (40%), Positives = 44/71 (61%)
Frame = -2
Query: 369 NYSTLRVFGCVCYVHLPPQERTKFTAQSVECAFLGYSPHQKGFLCYDPNLRRIRVSRNVI 428
N T R+FGC +VH+ R+KF ++++C F+ YS QKG+ CY P R+ VSR+V
Sbjct: 471 NNLTPRIFGCTSFVHIHSDGRSKFDHRALKCVFIRYSSTQKGYRCYHPPSRKYFVSRDVT 292
Query: 429 FQENKYFFASH 439
F E + +F +
Sbjct: 291 FHEQESYFGQN 259
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 66.2 bits (160), Expect = 6e-11
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = -2
Query: 604 FAPVAKMTTVRTILAIAASQAWPLHQMDVKNAFLHGDLQEEVYIKLPNGMPTPSPNTVCK 663
F P+ K+ T+ +L+I A + L +DVK AFL GDL E++Y+ P G V K
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*EVGKMVGK 375
Query: 664 LKRSLYGLKQAPR 676
LK+S+YGLKQ PR
Sbjct: 374 LKKSMYGLKQGPR 336
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 63.5 bits (153), Expect = 4e-10
Identities = 33/104 (31%), Positives = 57/104 (54%)
Frame = -3
Query: 818 IYVTITRPDISFAVHTVSKFMQAPRHFHLSAVQQIIRYLLGTLKRGLFFPVGSSIKLQAY 877
I +T+ P+I+F+++ +S++ AP H + ++ I +YL G + GLF+ S L Y
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 878 SDADWAGCPDTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEA 921
+A + P +S TG+ GN ISW+ K +++ SS A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.339 0.147 0.496
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,572,470
Number of Sequences: 36976
Number of extensions: 651776
Number of successful extensions: 4472
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 2478
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 1903
Number of HSP's gapped (non-prelim): 2837
length of query: 1019
length of database: 9,014,727
effective HSP length: 106
effective length of query: 913
effective length of database: 5,095,271
effective search space: 4651982423
effective search space used: 4651982423
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146527.6