BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146527.10 - phase: 0 /pseudo
(129 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG585866 123 1e-33
TC81772 40 3e-04
AJ497561 weakly similar to GP|10140689|gb putative non-LTR retro... 36 0.005
AW688528 31 0.15
TC86469 similar to GP|21464654|emb|CAD30328. acid phosphatase {L... 29 0.58
TC81691 weakly similar to GP|6016717|gb|AAF01543.1| unknown prot... 28 0.99
TC91177 similar to GP|9294656|dbj|BAB03005.1 gb|AAF30317.1~gene_... 28 0.99
TC93885 weakly similar to GP|18204817|gb|AAH21490.1 Similar to d... 28 1.3
AL367200 weakly similar to GP|9955528|emb putative protein {Arab... 28 1.3
BQ751661 weakly similar to PIR|T39572|T39 probable proteinase su... 27 1.7
TC80054 SP|Q28009|FUS_BOVIN RNA-binding protein FUS (Pigpen prot... 27 2.2
TC78016 similar to GP|21537191|gb|AAM61532.1 PRL1 protein {Arabi... 27 2.2
BE239650 similar to PIR|D87615|D876 conserved hypothetical prote... 27 2.9
BQ122396 similar to GP|7939524|dbj| contains similarity to unkno... 26 3.8
BQ137350 weakly similar to GP|11385579|gb| In2-1 protein {Glycin... 26 3.8
BE239441 weakly similar to PIR|T49216|T492 hypothetical protein ... 26 3.8
TC90474 26 3.8
BQ140218 homologue to GP|23495108|gb hypothetical protein {Plasm... 26 3.8
AW775796 similar to PIR|T08972|T08 hypothetical protein F19B15.2... 26 3.8
BQ137255 homologue to PIR|B34768|B347 ORF5 protein - Orf virus (... 26 3.8
>BG585866
Length = 828
Score = 123 bits (308), Expect(2) = 1e-33
Identities = 54/90 (60%), Positives = 69/90 (76%)
Frame = +3
Query: 39 IIRAKNILKEGYTWRIGSGSSSFWFSNWNSLGPIGSYVPIIDIHDLHLSVRDVLSAPGNH 98
IIR KN+LK GYTWR GSG+SSFW++NW+SLG +G+ P +DIHDLHL+V+DV + G H
Sbjct: 84 IIRDKNVLKSGYTWRAGSGNSSFWYTNWSSLGLLGTQAPFVDIHDLHLTVKDVFTTGGQH 263
Query: 99 TQVLYTNLPSAVENHINNIHIQFNDNIEDA 128
TQ LYT LP+ + INN H+ FN +I DA
Sbjct: 264 TQSLYTILPTDIAEVINNTHLNFNASIGDA 353
Score = 35.4 bits (80), Expect(2) = 1e-33
Identities = 17/28 (60%), Positives = 21/28 (74%), Gaps = 1/28 (3%)
Frame = +1
Query: 13 LSNKYTGGHNTL-LASASSNSSPTWSSI 39
L N Y+ GHN L +A+A NSSP+WSSI
Sbjct: 1 LFNNYSSGHNFLHIAAAHRNSSPSWSSI 84
>TC81772
Length = 982
Score = 40.0 bits (92), Expect = 3e-04
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 31 NSSPTWSSIIRAKNILKEGYTWRIGSGSS-SFWFSNWNSLGPIGSYVPII 79
N S W S+ + +L+EG+ W+IG GSS + W +W S G Y+P +
Sbjct: 708 NPSYIWCSV*TLRMVLEEGHHWKIGDGSSINIWTDHWLS----GMYIPCV 571
>AJ497561 weakly similar to GP|10140689|gb putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 621
Score = 35.8 bits (81), Expect = 0.005
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +2
Query: 5 TNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSG-----SS 59
+ L +L KY + A+ N S TW S++ +++L G+ W IG G SS
Sbjct: 404 STSLLSKILKFKYFPQWDFSYANLGHNPSFTWRSLLSTQSLLTLGHRWMIGDGSQINVSS 583
Query: 60 SFWFSNWNSLGP 71
W N +L P
Sbjct: 584 MSWIRNRPTLRP 619
>AW688528
Length = 631
Score = 30.8 bits (68), Expect = 0.15
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Frame = +3
Query: 74 SYVPIIDIHDLHLSVRDVL-SAPGNHTQVLYTNLPSAVENHINNIHIQFNDNIEDA 128
S +PI+ H + D + S+ G+ + A ENHI + QFN IEDA
Sbjct: 198 SIIPILHHQIPHSTYSDQMDSSSGDRPKAAVNRANVAGENHIPRLKNQFNSKIEDA 365
>TC86469 similar to GP|21464654|emb|CAD30328. acid phosphatase {Lupinus
luteus}, partial (92%)
Length = 1737
Score = 28.9 bits (63), Expect = 0.58
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 50 YTWRIGSGSSS--FWFSNWNSLGPIGSY 75
Y +RIGSG SS FWF +GP +Y
Sbjct: 436 YYYRIGSGDSSREFWFETPPKVGPDATY 519
>TC81691 weakly similar to GP|6016717|gb|AAF01543.1| unknown protein
{Arabidopsis thaliana}, complete
Length = 1465
Score = 28.1 bits (61), Expect = 0.99
Identities = 15/32 (46%), Positives = 18/32 (55%), Gaps = 1/32 (3%)
Frame = +2
Query: 52 WRIGSGSSSFWFS-NWNSLGPIGSYVPIIDIH 82
W IGS SSS WFS N N I + I+ +H
Sbjct: 935 WTIGSSSSSLWFSVNCNRWS*INKDLYILCVH 1030
>TC91177 similar to GP|9294656|dbj|BAB03005.1
gb|AAF30317.1~gene_id:F14O13.6~similar to unknown
protein {Arabidopsis thaliana}, partial (9%)
Length = 1298
Score = 28.1 bits (61), Expect = 0.99
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 87 SVRDVLSAPGNHTQVLYTNLPSAVENHINNIHIQFN 122
SV L +P NH +T +NH NN+H+ +N
Sbjct: 545 SVHRTLKSPSNHLLTRHT------QNHRNNLHLDWN 456
>TC93885 weakly similar to GP|18204817|gb|AAH21490.1 Similar to
death-associated protein kinase 1 {Mus musculus},
partial (2%)
Length = 827
Score = 27.7 bits (60), Expect = 1.3
Identities = 13/41 (31%), Positives = 23/41 (55%)
Frame = -2
Query: 82 HDLHLSVRDVLSAPGNHTQVLYTNLPSAVENHINNIHIQFN 122
HD+ + V + + P N ++ P +NHIN I++QF+
Sbjct: 601 HDIFVIVTAI*NPPANS---IFRV*PKTSDNHINRIYLQFS 488
>AL367200 weakly similar to GP|9955528|emb putative protein {Arabidopsis
thaliana}, partial (9%)
Length = 366
Score = 27.7 bits (60), Expect = 1.3
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 41 RAKNILKEGYTWRIGSGSSSFWFSNWNS 68
R N+ Y W GSGSSS+ FS WNS
Sbjct: 150 RGDNV*LVLYVW--GSGSSSYDFS*WNS 227
>BQ751661 weakly similar to PIR|T39572|T39 probable proteinase subunit -
fission yeast (Schizosaccharomyces pombe), partial (22%)
Length = 708
Score = 27.3 bits (59), Expect = 1.7
Identities = 14/38 (36%), Positives = 24/38 (62%)
Frame = -1
Query: 29 SSNSSPTWSSIIRAKNILKEGYTWRIGSGSSSFWFSNW 66
SS+SS + + I + ++ E Y WR GS SSS + +++
Sbjct: 285 SSSSSLSLAR*ICSPRLISERYFWRRGSSSSSTFLASF 172
>TC80054 SP|Q28009|FUS_BOVIN RNA-binding protein FUS (Pigpen protein).
[Bovine] {Bos taurus}, partial (4%)
Length = 988
Score = 26.9 bits (58), Expect = 2.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 84 LHLSVRDVLSAPGNHTQVLYTNLPSAVEN----HINNIHIQ 120
LHL + +L+ NH ++ TN + HINN+H Q
Sbjct: 86 LHLQLMGLLTITANHLPLVITNRDRDILRMAMVHINNLHNQ 208
>TC78016 similar to GP|21537191|gb|AAM61532.1 PRL1 protein {Arabidopsis
thaliana}, partial (81%)
Length = 1759
Score = 26.9 bits (58), Expect = 2.2
Identities = 16/74 (21%), Positives = 29/74 (38%), Gaps = 7/74 (9%)
Frame = +1
Query: 2 VQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNIL-------KEGYTWRI 54
++S + W+S+L +K H ++ +S + +I L W
Sbjct: 1090 IKSLFEQWLSILKSKLLHLHQLIILKSSPFQKENFVTICSLNRKLLSMQWLSMRRVLWLP 1269
Query: 55 GSGSSSFWFSNWNS 68
G + S WF +W S
Sbjct: 1270 GGDNGSMWFWDWKS 1311
>BE239650 similar to PIR|D87615|D876 conserved hypothetical protein CC2958
[imported] - Caulobacter crescentus, partial (10%)
Length = 628
Score = 26.6 bits (57), Expect = 2.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 11 SLLSNKYTGGHN----TLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSSFWFSNW 66
+L N+Y+ N LL S +S + + I +NI Y W G+ +S FW+ NW
Sbjct: 305 NLAFNRYSYCRN*F*LKLLIQISYSSWKSLTII*GRRNI----YYWFRGNNTSFFWWYNW 472
Query: 67 N 67
+
Sbjct: 473 S 475
>BQ122396 similar to GP|7939524|dbj| contains similarity to unknown
protein~gb|AAD25764.1~gene_id:K14B15.5 {Arabidopsis
thaliana}, partial (7%)
Length = 498
Score = 26.2 bits (56), Expect = 3.8
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +1
Query: 52 WRIGSGSS-SFWFSNWNSLG 70
WRI S+ FWFS WN G
Sbjct: 61 WRISFSSA*GFWFSLWNKSG 120
>BQ137350 weakly similar to GP|11385579|gb| In2-1 protein {Glycine max},
partial (34%)
Length = 897
Score = 26.2 bits (56), Expect = 3.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 84 LHLSVRDVLSAPGNHTQVLYTNLPSAVENHINNIHIQFNDNIEDA 128
+H R V H + YT++ + N INN +I N+ I+D+
Sbjct: 763 MHNH*RRVRCLQSTHNE--YTDIDDRITNIINNRYIDTNNEIDDS 891
>BE239441 weakly similar to PIR|T49216|T492 hypothetical protein F27K19.220 -
Arabidopsis thaliana, partial (4%)
Length = 451
Score = 26.2 bits (56), Expect = 3.8
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -1
Query: 79 IDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVENHINNIHIQFNDN 124
+ IHD +SVR H + + P +H+ N H N N
Sbjct: 151 LQIHDFPVSVRQHQ*LQIQHFHAV*SAAPQTFSHHV*NTHFHHNSN 14
>TC90474
Length = 744
Score = 26.2 bits (56), Expect = 3.8
Identities = 12/39 (30%), Positives = 20/39 (50%), Gaps = 4/39 (10%)
Frame = +2
Query: 36 WSSIIRAKNILKEG----YTWRIGSGSSSFWFSNWNSLG 70
WS +++ +G +TWR+G G+S W+ LG
Sbjct: 44 WSDLVKVIAC**QGCVMEFTWRVGEGASPTQGVEWSRLG 160
>BQ140218 homologue to GP|23495108|gb hypothetical protein {Plasmodium
falciparum 3D7}, partial (1%)
Length = 211
Score = 26.2 bits (56), Expect = 3.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 50 YTWRIGSGSSSFWFSNWNSLG 70
+TWR+G G+S W+ LG
Sbjct: 140 FTWRVGKGASPTQGVEWSKLG 202
>AW775796 similar to PIR|T08972|T08 hypothetical protein F19B15.200 -
Arabidopsis thaliana, partial (96%)
Length = 714
Score = 26.2 bits (56), Expect = 3.8
Identities = 10/39 (25%), Positives = 22/39 (55%)
Frame = +1
Query: 90 DVLSAPGNHTQVLYTNLPSAVENHINNIHIQFNDNIEDA 128
D++S T V + +LPS N + N+H + + ++++
Sbjct: 202 DLVSKDKIGTSVYFWSLPSCAGNQLRNVHQKLDSELQNS 318
>BQ137255 homologue to PIR|B34768|B347 ORF5 protein - Orf virus (strain NZ2),
partial (10%)
Length = 1161
Score = 26.2 bits (56), Expect = 3.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 41 RAKNILKEGYTWRIGSGSSSFWFSNWNSLG 70
R + + + WR+ SG+ SF+F + S G
Sbjct: 175 RFRRAARRAWRWRVVSGARSFFFLSGGSFG 86
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.130 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,173,558
Number of Sequences: 36976
Number of extensions: 79513
Number of successful extensions: 426
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of query: 129
length of database: 9,014,727
effective HSP length: 85
effective length of query: 44
effective length of database: 5,871,767
effective search space: 258357748
effective search space used: 258357748
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146527.10