TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146343.6 + phase: 0 /pseudo
         (560 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644690 weakly similar to GP|18542179|gb putative pol protein {...    63  7e-15
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ...    39  0.007
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid...    30  1.4

>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
           partial (22%)
          Length = 629

 Score = 63.2 bits (152), Expect(2) = 7e-15
 Identities = 50/139 (35%), Positives = 68/139 (47%)
 Frame = -3

Query: 112 LSETKQGWLLKATTNRKVLTMMRLLHQLQG*RPSEFFLHILHIKALNFFKWM*KVHF*MV 171
           L E    W  K T  +K  TMMRL H L   +  EF   +LH    +  KWM*+VH  M 
Sbjct: 423 LLEINPSWWCKDTIKKKE*TMMRLFHLLPEWKLLEF**LLLHSWGSSCTKWM*RVHLLME 244

Query: 172 F*MRKFM*ANLLTS*MKKNQIMFLNSLKHFMVLNKLPELGMIDLSHF*LKMDFQEEK*IP 231
              R+ + +NLL   M++ QIM  + ++H+MV +KL E GM     F  +M  +E +*  
Sbjct: 243 ISKRRCLSSNLLDLKMQRYQIMCSD*IRHYMV*SKLQEHGMKGCQSFC*RMVSKEAR*TI 64

Query: 232 HFSEKLITLTYS*FKFMWM 250
             S          FK MWM
Sbjct: 63  PCSY*KENKNCLSFKCMWM 7



 Score = 35.4 bits (80), Expect(2) = 7e-15
 Identities = 18/34 (52%), Positives = 24/34 (69%)
 Frame = -1

Query: 73  RNFLSLKETKFGT*FQIIKAKPSLEQDGFSKTSL 106
           +N +SLKE ++GT F  +KAK  LE  GF +TSL
Sbjct: 530 KNSISLKEVRYGTWFLDLKAKQ*LELGGFLETSL 429


>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (7%)
          Length = 763

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 27/64 (42%), Positives = 34/64 (52%)
 Frame = +3

Query: 107 MKKVRLSETKQGWLLKATTNRKVLTMMRLLHQLQG*RPSEFFLHILHIKALNFFKWM*KV 166
           MK  R S TKQG L KAT N K  T  + LHQL  *+P ++      +  +     M*K+
Sbjct: 129 MKMER*SNTKQG*LQKAT*NNKA*TSTKCLHQLFE*KPYDYSWR*QQLMDVRSIT*M*KL 308

Query: 167 HF*M 170
           H *M
Sbjct: 309 HS*M 320


>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
           thaliana}, partial (14%)
          Length = 778

 Score = 30.0 bits (66), Expect(2) = 1.4
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +1

Query: 79  KETKFGT*FQIIKAKPSLEQDGFSKTSLMKKVRLSETKQGWLLKATTNRKVLTMMRLLHQ 138
           KE   G+*    + +  L+ +G  K S M+  RL   K     + T N  VLT  + LHQ
Sbjct: 115 KEIILGS*QTYDQVQKPLDSNGSLKQS*MRMERLRSIKLDLWPRGTLNNMVLTTPKFLHQ 294

Query: 139 LQG*RPSEFFLHIL 152
                 SE+ L +L
Sbjct: 295 WLDGTRSEW*LLLL 336



 Score = 19.2 bits (38), Expect(2) = 1.4
 Identities = 11/19 (57%), Positives = 12/19 (62%)
 Frame = +3

Query: 163 M*KVHF*MVF*MRKFM*AN 181
           M*K H  M  *MRKF+  N
Sbjct: 372 M*KAHSCMEN*MRKFLLIN 428


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.379    0.169    0.641 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,167,505
Number of Sequences: 36976
Number of extensions: 249007
Number of successful extensions: 3637
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 2878
Number of HSP's gapped (non-prelim): 915
length of query: 560
length of database: 9,014,727
effective HSP length: 101
effective length of query: 459
effective length of database: 5,280,151
effective search space: 2423589309
effective search space used: 2423589309
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.7 bits)
S2: 61 (28.1 bits)